ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart37a01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
2dbj|AP003458.4| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
3dbj|AP003525.2| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
4gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 44 0.31
5gb|CP000316.1| Polaromonas sp. JS666, complete genome 42 1.2
6gb|CP000264.1| Jannaschia sp. CCS1, complete genome 42 1.2
7ref|NM_201339.2| Danio rerio T-cell acute lymphocytic leukemia 2... 42 1.2
8gb|BC093124.1| Danio rerio T-cell acute lymphocytic leukemia 2, ... 42 1.2
9gb|BC076106.1| Danio rerio T-cell acute lymphocytic leukemia 2, ... 42 1.2
10ref|XM_549939.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.8
11gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome 40 4.8
12ref|XM_482162.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.8
13ref|XM_479414.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.8
14gb|AC108813.8| Mus musculus chromosome 1, clone RP23-320P13, com... 40 4.8
15gb|AC150413.2| Branchiostoma floridae clone CH302-61A17, complet... 40 4.8
16emb|Z23012.1|TRTEF1G T.reesei tef1 gene for translation elongati... 40 4.8
17emb|AL662986.3|OSJN00187 Oryza sativa genomic DNA, chromosome 4,... 40 4.8
18emb|AL663007.2|OSJN00206 Oryza sativa genomic DNA, chromosome 4,... 40 4.8
19gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chr... 40 4.8
20gb|AC011095.5|AC011095 Homo sapiens, clone RP11-1O2, complete se... 40 4.8
21dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
22dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
23dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
24dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
25dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
26dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
27gb|AC013414.7| Homo sapiens BAC clone RP11-560I3 from 2, complet... 40 4.8
28dbj|AP004378.5| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
29dbj|AP006170.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
30dbj|AP006054.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
31dbj|AP002541.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
32dbj|AP002868.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
33dbj|AP006057.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
34dbj|AP005655.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
35dbj|AP004736.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
36dbj|AP005732.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
37dbj|AP004689.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
38gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. F... 40 4.8
39gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.8
40emb|AL731787.3|CNS08C8B Oryza sativa chromosome 12, . BAC OSJNBb... 40 4.8
41emb|AL731763.1|CNS07YQA Oryza sativa chromosome 12, . BAC OSJNBa... 40 4.8 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 103/127 (81%), Gaps = 3/127 (2%)
 Strand = Plus / Minus

                                                                           
Query: 236     accctttggtcccctgcgccgccatgccgc---ggccgtagtgccacgagtggccgccga 292
               |||||||||||||  ||  |||||||||||   |||||| || |||||||   || | ||
Sbjct: 5860422 accctttggtcccaagcttcgccatgccgccatggccgtggtaccacgagcttcctctga 5860363

                                                                           
Query: 293     gccctctggcgaaccgctgcagcgggttcagccgcgcgcacccgacgatgccctctgccg 352
               ||||||| || | ||||||||||||| ||||||   || |||||| ||||||||| ||||
Sbjct: 5860362 gccctctcgccagccgctgcagcgggctcagcctgacggacccgaggatgccctccgccg 5860303

                      
Query: 353     ccgccgc 359
               |||||||
Sbjct: 5860302 ccgccgc 5860296



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 341      tgccctctgccgccgccgcc 360
                ||||||||||||||||||||
Sbjct: 11503626 tgccctctgccgccgccgcc 11503645
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>dbj|AP003458.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0701E03
          Length = 183245

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 103/127 (81%), Gaps = 3/127 (2%)
 Strand = Plus / Minus

                                                                          
Query: 236    accctttggtcccctgcgccgccatgccgc---ggccgtagtgccacgagtggccgccga 292
              |||||||||||||  ||  |||||||||||   |||||| || |||||||   || | ||
Sbjct: 175951 accctttggtcccaagcttcgccatgccgccatggccgtggtaccacgagcttcctctga 175892

                                                                          
Query: 293    gccctctggcgaaccgctgcagcgggttcagccgcgcgcacccgacgatgccctctgccg 352
              ||||||| || | ||||||||||||| ||||||   || |||||| ||||||||| ||||
Sbjct: 175891 gccctctcgccagccgctgcagcgggctcagcctgacggacccgaggatgccctccgccg 175832

                     
Query: 353    ccgccgc 359
              |||||||
Sbjct: 175831 ccgccgc 175825
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>dbj|AP003525.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0537F07
          Length = 147724

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 103/127 (81%), Gaps = 3/127 (2%)
 Strand = Plus / Minus

                                                                         
Query: 236   accctttggtcccctgcgccgccatgccgc---ggccgtagtgccacgagtggccgccga 292
             |||||||||||||  ||  |||||||||||   |||||| || |||||||   || | ||
Sbjct: 61197 accctttggtcccaagcttcgccatgccgccatggccgtggtaccacgagcttcctctga 61138

                                                                         
Query: 293   gccctctggcgaaccgctgcagcgggttcagccgcgcgcacccgacgatgccctctgccg 352
             ||||||| || | ||||||||||||| ||||||   || |||||| ||||||||| ||||
Sbjct: 61137 gccctctcgccagccgctgcagcgggctcagcctgacggacccgaggatgccctccgccg 61078

                    
Query: 353   ccgccgc 359
             |||||||
Sbjct: 61077 ccgccgc 61071
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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 256    gccatgccgcggccgtagtgcc 277
              ||||||||||||||||||||||
Sbjct: 405953 gccatgccgcggccgtagtgcc 405932
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 248     cctgcgccgccatgccgcggc 268
               |||||||||||||||||||||
Sbjct: 3589393 cctgcgccgccatgccgcggc 3589413
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>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 339    gatgccctctgccgccgccgc 359
              |||||||||||||||||||||
Sbjct: 698568 gatgccctctgccgccgccgc 698588
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>ref|NM_201339.2| Danio rerio T-cell acute lymphocytic leukemia 2 (tal2), mRNA
          Length = 1283

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 5   atctcttccattctattatgg 25
           |||||||||||||||||||||
Sbjct: 750 atctcttccattctattatgg 770
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>gb|BC093124.1| Danio rerio T-cell acute lymphocytic leukemia 2, mRNA (cDNA clone
           MGC:111884 IMAGE:7428145), complete cds
          Length = 1283

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 5   atctcttccattctattatgg 25
           |||||||||||||||||||||
Sbjct: 750 atctcttccattctattatgg 770
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>gb|BC076106.1| Danio rerio T-cell acute lymphocytic leukemia 2, mRNA (cDNA clone
           IMAGE:7013692)
          Length = 2592

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 5   atctcttccattctattatgg 25
           |||||||||||||||||||||
Sbjct: 750 atctcttccattctattatgg 770
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>ref|XM_549939.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1698

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 341 tgccctctgccgccgccgcc 360
           ||||||||||||||||||||
Sbjct: 302 tgccctctgccgccgccgcc 321
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>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome
          Length = 2364842

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 307     cgctgcagcgggttcagccg 326
               ||||||||||||||||||||
Sbjct: 1357521 cgctgcagcgggttcagccg 1357502
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>ref|XM_482162.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 840

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 341 tgccctctgccgccgccgcc 360
           ||||||||||||||||||||
Sbjct: 686 tgccctctgccgccgccgcc 705
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>ref|XM_479414.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 966

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 341 tgccctctgccgccgccgcc 360
           ||||||||||||||||||||
Sbjct: 806 tgccctctgccgccgccgcc 825



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 341 tgccctctgccgccgccgcc 360
           ||||||||||||||||||||
Sbjct: 302 tgccctctgccgccgccgcc 321
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>gb|AC108813.8| Mus musculus chromosome 1, clone RP23-320P13, complete sequence
          Length = 198759

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    catgctccacaaagaggaga 74
             ||||||||||||||||||||
Sbjct: 73572 catgctccacaaagaggaga 73591
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>gb|AC150413.2| Branchiostoma floridae clone CH302-61A17, complete sequence
          Length = 240260

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 25     ggtacacgtatatgttgaca 44
              ||||||||||||||||||||
Sbjct: 170703 ggtacacgtatatgttgaca 170684
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>emb|Z23012.1|TRTEF1G T.reesei tef1 gene for translation elongation factor 1a
          Length = 2279

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 344  cctctgccgccgccgccaag 363
            ||||||||||||||||||||
Sbjct: 1982 cctctgccgccgccgccaag 2001
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>emb|AL662986.3|OSJN00187 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0087H01,
            complete sequence
          Length = 166906

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 341  tgccctctgccgccgccgcc 360
            ||||||||||||||||||||
Sbjct: 4101 tgccctctgccgccgccgcc 4082
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>emb|AL663007.2|OSJN00206 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0054B09,
              complete sequence
          Length = 146506

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 341    tgccctctgccgccgccgcc 360
              ||||||||||||||||||||
Sbjct: 108946 tgccctctgccgccgccgcc 108927
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>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete
               sequence
          Length = 4332241

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 118     cgattttaaaaacgcaaaag 137
               ||||||||||||||||||||
Sbjct: 4231537 cgattttaaaaacgcaaaag 4231518
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>gb|AC011095.5|AC011095 Homo sapiens, clone RP11-1O2, complete sequence
          Length = 157051

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 2     ataatctcttccattctatt 21
             ||||||||||||||||||||
Sbjct: 40952 ataatctcttccattctatt 40933
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 341      tgccctctgccgccgccgcc 360
                ||||||||||||||||||||
Sbjct: 14271181 tgccctctgccgccgccgcc 14271162
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 341      tgccctctgccgccgccgcc 360
                ||||||||||||||||||||
Sbjct: 17819164 tgccctctgccgccgccgcc 17819145



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 341      tgccctctgccgccgccgcc 360
                ||||||||||||||||||||
Sbjct: 17521402 tgccctctgccgccgccgcc 17521421
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 341      tgccctctgccgccgccgcc 360
                ||||||||||||||||||||
Sbjct: 22124972 tgccctctgccgccgccgcc 22124953



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 341      tgccctctgccgccgccgcc 360
                ||||||||||||||||||||
Sbjct: 17093922 tgccctctgccgccgccgcc 17093941



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 341      tgccctctgccgccgccgcc 360
                ||||||||||||||||||||
Sbjct: 14128415 tgccctctgccgccgccgcc 14128396



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 341     tgccctctgccgccgccgcc 360
               ||||||||||||||||||||
Sbjct: 7364278 tgccctctgccgccgccgcc 7364297
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 341      tgccctctgccgccgccgcc 360
                ||||||||||||||||||||
Sbjct: 18267555 tgccctctgccgccgccgcc 18267536
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 341      tgccctctgccgccgccgcc 360
                ||||||||||||||||||||
Sbjct: 27810428 tgccctctgccgccgccgcc 27810447



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 341      tgccctctgccgccgccgcc 360
                ||||||||||||||||||||
Sbjct: 27808767 tgccctctgccgccgccgcc 27808786
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 341     tgccctctgccgccgccgcc 360
               ||||||||||||||||||||
Sbjct: 1098809 tgccctctgccgccgccgcc 1098790
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>gb|AC013414.7| Homo sapiens BAC clone RP11-560I3 from 2, complete sequence
          Length = 161390

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 220    tccctcatccctccctaccc 239
              ||||||||||||||||||||
Sbjct: 108382 tccctcatccctccctaccc 108401
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>dbj|AP004378.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0496C02
          Length = 148419

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 341    tgccctctgccgccgccgcc 360
              ||||||||||||||||||||
Sbjct: 102807 tgccctctgccgccgccgcc 102826



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 341    tgccctctgccgccgccgcc 360
              ||||||||||||||||||||
Sbjct: 101146 tgccctctgccgccgccgcc 101165
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>dbj|AP006170.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0042B15
          Length = 157981

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 341   tgccctctgccgccgccgcc 360
             ||||||||||||||||||||
Sbjct: 46465 tgccctctgccgccgccgcc 46446
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>dbj|AP006054.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0417E03
          Length = 133019

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 341   tgccctctgccgccgccgcc 360
             ||||||||||||||||||||
Sbjct: 72869 tgccctctgccgccgccgcc 72888
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>dbj|AP002541.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0494A10
          Length = 145576

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 341    tgccctctgccgccgccgcc 360
              ||||||||||||||||||||
Sbjct: 136477 tgccctctgccgccgccgcc 136458
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>dbj|AP002868.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0698A04
          Length = 141079

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 341   tgccctctgccgccgccgcc 360
             ||||||||||||||||||||
Sbjct: 68123 tgccctctgccgccgccgcc 68104
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>dbj|AP006057.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:B1342C04
          Length = 172097

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 341   tgccctctgccgccgccgcc 360
             ||||||||||||||||||||
Sbjct: 34679 tgccctctgccgccgccgcc 34698
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>dbj|AP005655.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0025H07
          Length = 145605

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 341   tgccctctgccgccgccgcc 360
             ||||||||||||||||||||
Sbjct: 87581 tgccctctgccgccgccgcc 87600
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>dbj|AP004736.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0062A09
          Length = 173541

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 341   tgccctctgccgccgccgcc 360
             ||||||||||||||||||||
Sbjct: 98241 tgccctctgccgccgccgcc 98260
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>dbj|AP005732.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBb0014M19
          Length = 129270

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 341    tgccctctgccgccgccgcc 360
              ||||||||||||||||||||
Sbjct: 107350 tgccctctgccgccgccgcc 107331
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>dbj|AP004689.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0434E03
          Length = 142414

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 341   tgccctctgccgccgccgcc 360
             ||||||||||||||||||||
Sbjct: 89867 tgccctctgccgccgccgcc 89848
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>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome
               I, complete sequence
          Length = 4277185

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 118     cgattttaaaaacgcaaaag 137
               ||||||||||||||||||||
Sbjct: 4175325 cgattttaaaaacgcaaaag 4175306
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 341      tgccctctgccgccgccgcc 360
                ||||||||||||||||||||
Sbjct: 17745483 tgccctctgccgccgccgcc 17745464
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>emb|AL731787.3|CNS08C8B Oryza sativa chromosome 12, . BAC OSJNBb0014C10 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 142246

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 341   tgccctctgccgccgccgcc 360
             ||||||||||||||||||||
Sbjct: 38362 tgccctctgccgccgccgcc 38343
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>emb|AL731763.1|CNS07YQA Oryza sativa chromosome 12, . BAC OSJNBa0090O14 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 129619

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 341   tgccctctgccgccgccgcc 360
             ||||||||||||||||||||
Sbjct: 11004 tgccctctgccgccgccgcc 10985


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,240,277
Number of Sequences: 3902068
Number of extensions: 3240277
Number of successful extensions: 64720
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63778
Number of HSP's gapped (non-prelim): 942
length of query: 363
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 341
effective length of database: 17,147,199,772
effective search space: 5847195122252
effective search space used: 5847195122252
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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