ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart36h09 |
|---|---|
| Clone Library Name | barley_pub |
>AGAL_ORYSA (Q9FXT4) Alpha-galactosidase precursor (EC 3.2.1.22) (Melibiase)| (Alpha-D-galactoside galactohydrolase) Length = 417 Score = 165 bits (418), Expect = 4e-41 Identities = 76/88 (86%), Positives = 81/88 (92%) Frame = -1 Query: 459 LGVQGKKVQSDGGLEVWAGPLSGNRKAVVLWNRQGYQATITAHWSNVGLPASASVTARDL 280 LGVQGKKVQSD GLEVWAGPLS NRKAVVLWNRQ YQATITAHWSN+GL S +VTARDL Sbjct: 329 LGVQGKKVQSDNGLEVWAGPLSNNRKAVVLWNRQSYQATITAHWSNIGLAGSVAVTARDL 388 Query: 279 WAHSSFSAQGQLSASVGPHDCKMYILTP 196 WAHSSF+AQGQ+SASV PHDCKMY+LTP Sbjct: 389 WAHSSFAAQGQISASVAPHDCKMYVLTP 416
>AGAL_COFAR (Q42656) Alpha-galactosidase precursor (EC 3.2.1.22) (Melibiase)| (Alpha-D-galactoside galactohydrolase) Length = 378 Score = 122 bits (305), Expect = 6e-28 Identities = 60/90 (66%), Positives = 72/90 (80%), Gaps = 1/90 (1%) Frame = -1 Query: 459 LGVQGKKVQSDGGLEVWAGPLSGNRKAVVLWNRQGYQATITAHWSNVGLPASASVTARDL 280 LGVQG KV++ G LEVWAGPLSG R AV LWNR ATITA+WS+VGLP++A V ARDL Sbjct: 289 LGVQGNKVKTYGDLEVWAGPLSGKRVAVALWNRGSSTATITAYWSDVGLPSTAVVNARDL 348 Query: 279 WAHSS-FSAQGQLSASVGPHDCKMYILTPK 193 WAHS+ S +GQ+SA+V HD KMY+LTP+ Sbjct: 349 WAHSTEKSVKGQISAAVDAHDSKMYVLTPQ 378
>AGAL_CYATE (P14749) Alpha-galactosidase precursor (EC 3.2.1.22) (Melibiase)| (Alpha-D-galactoside galactohydrolase) Length = 411 Score = 114 bits (286), Expect = 9e-26 Identities = 53/90 (58%), Positives = 67/90 (74%), Gaps = 1/90 (1%) Frame = -1 Query: 459 LGVQGKKVQSDGGLEVWAGPLSGNRKAVVLWNRQGYQATITAHWSNVGLPASASVTARDL 280 LGVQGKKV+S LEVWAGPLS N+ AV+LWNR +AT+TA WS++GL +V ARDL Sbjct: 321 LGVQGKKVKSTNDLEVWAGPLSDNKVAVILWNRSSSRATVTASWSDIGLQQGTTVDARDL 380 Query: 279 WAHSSFS-AQGQLSASVGPHDCKMYILTPK 193 W HS+ S G++SA + H CKMY+LTP+ Sbjct: 381 WEHSTQSLVSGEISAEIDSHACKMYVLTPR 410
>IMD_ARTGO (Q44052) Isomalto-dextranase precursor (EC 3.2.1.94) (Glucan| 1,6-alpha-isomaltosidase) (Exo-isomaltohydrolase) Length = 641 Score = 38.9 bits (89), Expect = 0.006 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 2/76 (2%) Frame = -1 Query: 417 EVWAGPLSGNRKAVVLWNRQGYQA-TITAHWS-NVGLPASASVTARDLWAHSSFSAQGQL 244 E WAG L V L+NR + T T ++ ++GL +V RDLW H + + Sbjct: 420 ERWAGQLPDGSWGVALFNRSDTETVTKTIDFAKDLGLATGGNV--RDLWEHRNLGMDSRA 477 Query: 243 SASVGPHDCKMYILTP 196 +A++ PH ++ +TP Sbjct: 478 TAALAPHASAIFRVTP 493
>LATS1_HUMAN (O95835) Serine/threonine-protein kinase LATS1 (EC 2.7.11.1) (Large| tumor suppressor homolog 1) (WARTS protein kinase) (h-warts) Length = 1130 Score = 33.9 bits (76), Expect = 0.20 Identities = 37/139 (26%), Positives = 59/139 (42%), Gaps = 3/139 (2%) Frame = +3 Query: 42 LQTSETHFTALYIQLQLISNLM*PNRISQFISARLYRSPSLQTPSPESTVTLASGCTSCS 221 LQT + + Y + ++M PNR S + P LQT P+S+ A S Sbjct: 389 LQTGGSAAPSSYTNGSIPQSMMVPNRNSHNMELYNISVPGLQTNWPQSSSAPAQSSPSSG 448 Query: 222 HEAPLMRIVAPERRTT-SAPIDRERSRT--RMPEARRLTSVR*WLPGTPACSIERPPFCC 392 HE P + P R + + P+ S + P A +T++ TPA I++P Sbjct: 449 HEIPTWQPNIPVRSNSFNNPLGNRASHSANSQPSATTVTAI------TPA-PIQQPVKSM 501 Query: 393 R*AVRPRPPNRHRIAPSFP 449 R +P + +AP+ P Sbjct: 502 RVL---KPELQTALAPTHP 517
>AGAL_HUMAN (P06280) Alpha-galactosidase A precursor (EC 3.2.1.22) (Melibiase)| (Alpha-D-galactoside galactohydrolase) (Alpha-D-galactosidase A) (Agalsidase alfa) Length = 429 Score = 32.3 bits (72), Expect = 0.59 Identities = 16/34 (47%), Positives = 20/34 (58%) Frame = -1 Query: 459 LGVQGKKVQSDGGLEVWAGPLSGNRKAVVLWNRQ 358 LG QG +++ EVW PLSG AV + NRQ Sbjct: 324 LGKQGYQLRQGDNFEVWERPLSGLAWAVAMINRQ 357
>PHSM_KLEPN (P07094) Maltodextrin phosphorylase (EC 2.4.1.1) (Fragment)| Length = 108 Score = 31.6 bits (70), Expect = 1.0 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = -1 Query: 369 WNRQGYQATITAHWSNVGLPASASVTARDLWAHSSFSAQGQLSA 238 +N+ +QA +T W + GL +++ +T R W S + LSA Sbjct: 6 FNKAQFQAALTRQWQHFGLQSASEMTQRQWWRAVSGALSELLSA 49
>MEL_ZYGCI (Q99172) Alpha-galactosidase precursor (EC 3.2.1.22) (Melibiase)| (Alpha-D-galactoside galactohydrolase) Length = 469 Score = 31.2 bits (69), Expect = 1.3 Identities = 12/45 (26%), Positives = 23/45 (51%) Frame = -1 Query: 453 VQGKKVQSDGGLEVWAGPLSGNRKAVVLWNRQGYQATITAHWSNV 319 V K +G +++W+GPL V L N + ++ A W+++ Sbjct: 331 VSDKDQYGEGEIQLWSGPLDNGDHVVALLNGGNNERSMNASWNDI 375
>CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22| Length = 1010 Score = 31.2 bits (69), Expect = 1.3 Identities = 28/102 (27%), Positives = 37/102 (36%) Frame = +3 Query: 147 YRSPSLQTPSPESTVTLASGCTSCSHEAPLMRIVAPERRTTSAPIDRERSRTRMPEARRL 326 YRSP +TPSP + H P R P ++ S R R P R+ Sbjct: 53 YRSPGERTPSPSPRRDRSLSPRDQPHSHPRSRSPTPRSQSPS------RRSVRSPSPRQ- 105 Query: 327 TSVR*WLPGTPACSIERPPFCCR*AVRPRPPNRHRIAPSFPG 452 G+PA ++R R PP RH +P G Sbjct: 106 --------GSPARRVDR---SSSPRARSPPPRRHSRSPPLRG 136
>LATS1_MOUSE (Q8BYR2) Serine/threonine-protein kinase LATS1 (EC 2.7.11.1) (Large| tumor suppressor homolog 1) (WARTS protein kinase) Length = 1129 Score = 31.2 bits (69), Expect = 1.3 Identities = 36/139 (25%), Positives = 58/139 (41%), Gaps = 3/139 (2%) Frame = +3 Query: 42 LQTSETHFTALYIQLQLISNLM*PNRISQFISARLYRSPSLQTPSPESTVTLASGCTSCS 221 LQT + + + ++M PNR S + P LQT P+S+ A S Sbjct: 388 LQTGASAAPPSFANGNVPQSMMVPNRNSHNMELYNINVPGLQTAWPQSSSAPAQSSPSGG 447 Query: 222 HEAPLMRIVAPERRTT-SAPIDRERSRT--RMPEARRLTSVR*WLPGTPACSIERPPFCC 392 HE P + P R + + P+ S + P A +T++ TPA I++P Sbjct: 448 HEIPTWQPNIPVRSNSFNNPLGSRASHSANSQPSATTVTAI------TPA-PIQQPVKSM 500 Query: 393 R*AVRPRPPNRHRIAPSFP 449 R +P + +AP+ P Sbjct: 501 RVL---KPELQTALAPTHP 516
>CARA_ACIAD (Q6F8M7) Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase glutamine chain) Length = 379 Score = 30.4 bits (67), Expect = 2.3 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 10/43 (23%) Frame = -1 Query: 315 LPASASVTARDLWAHSS----------FSAQGQLSASVGPHDC 217 LPA+ VT R L+ ++ FS QG AS GPHDC Sbjct: 321 LPANLKVTHRSLFDGTNQGIHRTDKPAFSFQGHPEASPGPHDC 363
>COFA1_HUMAN (P39059) Collagen alpha-1(XV) chain precursor [Contains: Endostatin| (Endostatin-XV) (Restin) (Related to endostatin)] Length = 1388 Score = 30.0 bits (66), Expect = 2.9 Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 15/75 (20%) Frame = +3 Query: 111 PNRISQFISARLYRSPSLQTPSPESTVTLASGCTSCSHE---------------APLMRI 245 P + +SA+ + PS E ++T A+ T S APL Sbjct: 433 PGELDLSMSAQSLGEEATVGPSSEDSLTTAAAATEVSLSTFEDEEASGVPTDGLAPLTAT 492 Query: 246 VAPERRTTSAPIDRE 290 +APER TS P D E Sbjct: 493 MAPERAVTSGPGDEE 507
>ZDHC8_PANTR (Q2THX0) Probable palmitoyltransferase ZDHHC8 (EC 2.3.1.-) (Zinc| finger DHHC domain-containing protein 8) (DHHC-8) Length = 765 Score = 30.0 bits (66), Expect = 2.9 Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 2/94 (2%) Frame = +3 Query: 150 RSPSLQTP--SPESTVTLASGCTSCSHEAPLMRIVAPERRTTSAPIDRERSRTRMPEARR 323 R+P+LQT S S+V+ A +S S +A AP R +S R +R +P Sbjct: 620 RNPALQTSLSSLSSSVSRAPRTSSSSLQADQASSNAPGPRPSSGS-HRSPARQGLPSP-- 676 Query: 324 LTSVR*WLPGTPACSIERPPFCCR*AVRPRPPNR 425 PGTP +I R P CR + P P R Sbjct: 677 --------PGTPHLTILRGPQSCR--LHPHGPPR 700
>UL126_HCMVA (P16836) Hypothetical protein UL126| Length = 134 Score = 29.3 bits (64), Expect = 5.0 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 6/65 (9%) Frame = -2 Query: 455 VSRERRCNPMAVWRSGPD----RSAATERRSFYGTGR--GTRQPSPHTGQTSGFRHPRP* 294 +SR R N WR P +R S G R GTR P + ++ +R RP Sbjct: 52 ISRARLVNRQIAWRRHPRCFDLHRRHRDRSSLRGRERCIGTRIPRAKSDVSTAYRVYRPT 111 Query: 293 PLAIY 279 PLA Y Sbjct: 112 PLASY 116
>RL2_NITEU (Q82X85) 50S ribosomal protein L2| Length = 278 Score = 29.3 bits (64), Expect = 5.0 Identities = 24/76 (31%), Positives = 28/76 (36%), Gaps = 18/76 (23%) Frame = -3 Query: 448 GKEGAIRWR------------------FGGLGRTAQRQQKGGRSMEQAGVPGNHHRTLVK 323 GK GAIRWR GG G+TA G + G P RT Sbjct: 207 GKAGAIRWRGVRPTVRGVAMNPIDHPHGGGEGKTA----AGRHPVSPWGTPSKGSRTRKN 262 Query: 322 RRASGIRVRDRSRSMG 275 +R S + VR R G Sbjct: 263 KRTSNMIVRSRYSKKG 278
>SYI_MYCPN (P75258) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 861 Score = 28.9 bits (63), Expect = 6.6 Identities = 22/73 (30%), Positives = 32/73 (43%) Frame = -1 Query: 369 WNRQGYQATITAHWSNVGLPASASVTARDLWAHSSFSAQGQLSASVGPHDCKMYILTPK* 190 WN QG+ W GLP +V+ +D ++S LS S CK + L+ Sbjct: 81 WNLQGFGTVFIPGWDCHGLPIEHAVSKKDPQHYAS------LSLSEKRDLCKQFALSQ-- 132 Query: 189 L*IQGKGFARKGI 151 + IQ F R G+ Sbjct: 133 IAIQKAQFQRLGL 145
>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1| Length = 917 Score = 28.9 bits (63), Expect = 6.6 Identities = 25/66 (37%), Positives = 29/66 (43%) Frame = +3 Query: 252 PERRTTSAPIDRERSRTRMPEARRLTSVR*WLPGTPACSIERPPFCCR*AVRPRPPNRHR 431 P RR T P R R+ + P RR S R + P PP R A P PP R R Sbjct: 581 PRRRRTPTPPPRRRTPSPPPR-RRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKR-R 638 Query: 432 IAPSFP 449 +PS P Sbjct: 639 ASPSPP 644
>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1| (Ser/Arg-related nuclear matrix protein) (SR-related nuclear matrix protein of 160 kDa) (SRm160) Length = 904 Score = 28.9 bits (63), Expect = 6.6 Identities = 25/66 (37%), Positives = 29/66 (43%) Frame = +3 Query: 252 PERRTTSAPIDRERSRTRMPEARRLTSVR*WLPGTPACSIERPPFCCR*AVRPRPPNRHR 431 P RR T P R R+ + P RR S R + P PP R A P PP R R Sbjct: 567 PRRRRTPTPPPRRRTPSPPPR-RRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKR-R 624 Query: 432 IAPSFP 449 +PS P Sbjct: 625 ASPSPP 630
>LEUD2_BORPA (Q7W749) 3-isopropylmalate dehydratase small subunit 2 (EC| 4.2.1.33) (Isopropylmalate isomerase 2) (Alpha-IPM isomerase 2) (IPMI 2) Length = 202 Score = 28.9 bits (63), Expect = 6.6 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 1/70 (1%) Frame = -1 Query: 432 SDGGLEVWAGPLSGNRKAVVLWNRQGYQ-ATITAHWSNVGLPASASVTARDLWAHSSFSA 256 +DG + W G + + N+ YQ A I N G +S +WAH + Sbjct: 39 ADGFMGAWRYDEHGQPRPECVLNQPAYQGAAIVLARENYGCGSSRE---HAVWAHQGYGI 95 Query: 255 QGQLSASVGP 226 + ++AS GP Sbjct: 96 RAIVAASYGP 105
>LEUD2_BORBR (Q7WIN3) 3-isopropylmalate dehydratase small subunit 2 (EC| 4.2.1.33) (Isopropylmalate isomerase 2) (Alpha-IPM isomerase 2) (IPMI 2) Length = 202 Score = 28.9 bits (63), Expect = 6.6 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 1/70 (1%) Frame = -1 Query: 432 SDGGLEVWAGPLSGNRKAVVLWNRQGYQ-ATITAHWSNVGLPASASVTARDLWAHSSFSA 256 +DG + W G + + N+ YQ A I N G +S +WAH + Sbjct: 39 ADGFMGAWRYDEHGQPRPECVLNQPAYQGAAIVLARENYGCGSSRE---HAVWAHQGYGI 95 Query: 255 QGQLSASVGP 226 + ++AS GP Sbjct: 96 RAIVAASYGP 105
>LEUD1_BORPE (Q7VYI1) 3-isopropylmalate dehydratase small subunit 1 (EC| 4.2.1.33) (Isopropylmalate isomerase 1) (Alpha-IPM isomerase 1) (IPMI 1) Length = 202 Score = 28.9 bits (63), Expect = 6.6 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 1/70 (1%) Frame = -1 Query: 432 SDGGLEVWAGPLSGNRKAVVLWNRQGYQ-ATITAHWSNVGLPASASVTARDLWAHSSFSA 256 +DG + W G + + N+ YQ A I N G +S +WAH + Sbjct: 39 ADGFMGAWRYDEHGQPRPECVLNQPAYQGAAIVLARENYGCGSSRE---HAVWAHQGYGI 95 Query: 255 QGQLSASVGP 226 + ++AS GP Sbjct: 96 RAIVAASYGP 105
>RSV1_SCHPO (Q9P7D9) DNA-binding protein rsv1| Length = 428 Score = 28.5 bits (62), Expect = 8.6 Identities = 15/46 (32%), Positives = 23/46 (50%) Frame = +3 Query: 96 SNLM*PNRISQFISARLYRSPSLQTPSPESTVTLASGCTSCSHEAP 233 SNL+ PN+ + + + P+L+ PS S T S + H AP Sbjct: 378 SNLISPNQTFNPVKSSVKALPTLEPPSSPSHATATSSLHTLFHTAP 423
>TRZA_RHOCO (Q52725) S-triazine hydrolase (EC 3.8.1.-) (N-ethylammeline| chlorohydrolase) Length = 476 Score = 28.5 bits (62), Expect = 8.6 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 11/51 (21%) Frame = +3 Query: 153 SPSLQTPSPES-----------TVTLASGCTSCSHEAPLMRIVAPERRTTS 272 SP+ TP+P S T T ++GCT+CS A L P + TTS Sbjct: 57 SPASSTPTPTSHKSSSGVVHPMTATSSNGCTTCSIPASL-----PTQTTTS 102
>SPT5_YEAST (P27692) Transcription elongation factor SPT5 (Chromatin elongation| factor SPT5) Length = 1063 Score = 28.5 bits (62), Expect = 8.6 Identities = 14/34 (41%), Positives = 14/34 (41%) Frame = -1 Query: 456 GVQGKKVQSDGGLEVWAGPLSGNRKAVVLWNRQG 355 G K DGG W GNR A WN QG Sbjct: 1019 GNNNNKSTRDGGASAWGNQDDGNRSA---WNNQG 1049
>MP2K1_XENLA (Q05116) Dual specificity mitogen-activated protein kinase kinase 1| (EC 2.7.12.2) (MAP kinase kinase 1) (MAPKK 1) (ERK activator kinase 1) (MAPK/ERK kinase 1) (MEK1) Length = 394 Score = 28.5 bits (62), Expect = 8.6 Identities = 12/21 (57%), Positives = 13/21 (61%) Frame = +3 Query: 363 CSIERPPFCCR*AVRPRPPNR 425 CS+ER P A RPRPP R Sbjct: 276 CSVERDPASSELAPRPRPPGR 296 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,709,207 Number of Sequences: 219361 Number of extensions: 1592752 Number of successful extensions: 4571 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 4359 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4567 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2909956200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
