ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart36h06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK101781.1| Oryza sativa (japonica cultivar-group) cDNA clon... 202 8e-49
2dbj|AK073778.1| Oryza sativa (japonica cultivar-group) cDNA clon... 202 8e-49
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 186 5e-44
4dbj|AP001278.1| Oryza sativa (japonica cultivar-group) genomic D... 186 5e-44
5gb|AY106292.1| Zea mays PCO061640 mRNA sequence 157 4e-35
6ref|NM_187856.1| Oryza sativa (japonica cultivar-group), Ozsa830... 145 2e-31
7gb|AC149540.1| Populus trichocarpa clone Pop1-111J19, complete s... 42 1.7
8gb|AY623109.1| Homo sapiens TAF1 RNA polymerase II, TATA box bin... 42 1.7
9gb|AC099310.1| Drosophila melanogaster, chromosome 3R, region 94... 42 1.7
10gb|AC026742.3| Homo sapiens chromosome 5 clone CTD-3103E19, comp... 42 1.7
11gb|AC093633.3| Homo sapiens BAC clone RP11-157M22 from 2, comple... 42 1.7
12emb|BX548066.3| Zebrafish DNA sequence from clone CH211-226F1 in... 42 1.7
13gb|AE003740.3| Drosophila melanogaster chromosome 3R, section 78... 42 1.7
14emb|AL590762.1|HSXDPA Homo sapiens chromosome X sequence from 6... 42 1.7
15gb|AC166836.3| Mus musculus BAC clone RP23-17O23 from chromosome... 40 6.8
16gb|AC169506.1| Mus musculus BAC clone RP23-417L6 from chromosome... 40 6.8
17gb|AC153856.23| Mus musculus 10 BAC RP23-468J15 (Roswell Park Ca... 40 6.8
18gb|CP000081.1| Leishmania major chromosome 35, complete sequence 40 6.8
19ref|XM_365356.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 6.8
20gb|AC138667.8| Mus musculus chromosome 14, clone RP24-122H16, co... 40 6.8
21gb|BC068087.1| Homo sapiens cDNA clone IMAGE:6261819, partial cds 40 6.8
22gb|AC152001.3| Ornithorhynchus anatinus BAC clone OABb-256A1 fro... 40 6.8
23gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 40 6.8
24ref|XM_838342.1| Leishmania major strain Friedlin hypothetical p... 40 6.8
25gb|AC121590.2| Mus musculus BAC clone RP23-281L22 from 2, comple... 40 6.8
26emb|AL359832.33| Human DNA sequence from clone RP11-790G19 on ch... 40 6.8
27emb|AL050317.16|HSDJ94E24 Human DNA sequence from clone RP1-94E2... 40 6.8
28emb|BX842649.1| Bdellovibrio bacteriovorus complete genome, stra... 40 6.8
29dbj|AK090980.1| Homo sapiens cDNA FLJ33661 fis, clone BRAMY2026778 40 6.8
30gb|AC090486.3| Genomic sequence for Oryza sativa (japonica cult... 40 6.8
31gb|AC017091.8| Homo sapiens BAC clone RP11-506N2 from 4, complet... 40 6.8
32gb|AF314789.1|AF314789 Alectryon kimberleyanus chloroplast matur... 40 6.8
33dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
34gb|AC158497.2| Medicago truncatula chromosome 2 BAC clone mth2-4... 40 6.8
35gb|AC012363.6| Homo sapiens BAC clone RP11-438O12 from 2, comple... 40 6.8
36dbj|AP003683.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
37gb|AC158804.3| Mus musculus 10 BAC RP24-354M22 (Roswell Park Can... 40 6.8
38emb|CR381567.9| Zebrafish DNA sequence from clone DKEY-115O4 in ... 40 6.8
39emb|CT010445.12| Mouse DNA sequence from clone RP23-285G1 on chr... 40 6.8
40gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.8
41emb|AL732404.7| Mouse DNA sequence from clone RP23-177D21 on chr... 40 6.8 
>dbj|AK101781.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033064P19, full
            insert sequence
          Length = 1279

 Score =  202 bits (102), Expect = 8e-49
 Identities = 383/471 (81%), Gaps = 23/471 (4%)
 Strand = Plus / Minus

                                                                        
Query: 36   attttatatatctatctgaatcatagcttacacaacttattaagcaaaataacttccact 95
            |||||||||||||||||||| | ||| |||||||| ||||| | ||||| || ||||| |
Sbjct: 1262 attttatatatctatctgaagcttagattacacaaattattgaacaaaa-aagttccatt 1204

                                                                        
Query: 96   cagtcgaccaaacaatcagctcaaaaccctaactgagtcagggccctggcatatctgcca 155
              |||    |||||||||||||||||||||||  |||| |||||||||||| || |||||
Sbjct: 1203 ttgtc----aaacaatcagctcaaaaccctaatcgagttagggccctggcacatttgcca 1148

                                                                        
Query: 156  ggtaatgtacatggaacaacaatgatctg--gctggtcagtaacgggatgactcttgtaa 213
             ||| |||||||||||||||| ||||| |  || || |||||| ||||||||||  | ||
Sbjct: 1147 agtagtgtacatggaacaacattgatcagaggcgggccagtaatgggatgactc--gcaa 1090

                                                                        
Query: 214  cccgggagccactcatatatccaatgcaaaatttaacaaacaatcacgtgggattgtcaa 273
             || | | | ||||||||||||| |||||||||||||    |||   || |||| |||||
Sbjct: 1089 tccagcaactactcatatatcca-tgcaaaatttaac----aattttgtcggatggtcaa 1035

                                                                        
Query: 274  gc---aatgcactgaaagcaaaaggattcttccaaatttggccctagccttaatctgctg 330
            ||   | ||||| |||| ||||||||  |||||||| | |||||||  ||||||| ||| 
Sbjct: 1034 gctgaagtgcacagaaaacaaaaggacccttccaaagtaggccctaatcttaatccgcta 975

                                                                        
Query: 331  ccatgaacggatcgacatcaccaagatcagcaataagcggctccatgtcttccgactcac 390
            ||||||| || ||||  |||||||||||||| |  ||  |||||      ||||||||||
Sbjct: 974  ccatgaatgggtcgatgtcaccaagatcagcgacgaggagctcc------tccgactcac 921

                                                                        
Query: 391  cttcttgcgagaaatacgtagggaatggcagcaaagctctgtcgggtttcttgtaaatag 450
            ||||||| |||||||| || ||||| ||||||  |||| |||||||||||||||| || |
Sbjct: 920  cttcttgtgagaaatatgttgggaaaggcagcttagctatgtcgggtttcttgtatattg 861

                                                               
Query: 451  agtccttgacgaaaagaaagctgccttgaggaccaggaacctggcctttca 501
            ||||||| || |||| |||||||||||||||||||||||||||||||||||
Sbjct: 860  agtccttaacaaaaacaaagctgccttgaggaccaggaacctggcctttca 810
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>dbj|AK073778.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070D07, full
            insert sequence
          Length = 1313

 Score =  202 bits (102), Expect = 8e-49
 Identities = 383/471 (81%), Gaps = 23/471 (4%)
 Strand = Plus / Minus

                                                                        
Query: 36   attttatatatctatctgaatcatagcttacacaacttattaagcaaaataacttccact 95
            |||||||||||||||||||| | ||| |||||||| ||||| | ||||| || ||||| |
Sbjct: 1297 attttatatatctatctgaagcttagattacacaaattattgaacaaaa-aagttccatt 1239

                                                                        
Query: 96   cagtcgaccaaacaatcagctcaaaaccctaactgagtcagggccctggcatatctgcca 155
              |||    |||||||||||||||||||||||  |||| |||||||||||| || |||||
Sbjct: 1238 ttgtc----aaacaatcagctcaaaaccctaatcgagttagggccctggcacatttgcca 1183

                                                                        
Query: 156  ggtaatgtacatggaacaacaatgatctg--gctggtcagtaacgggatgactcttgtaa 213
             ||| |||||||||||||||| ||||| |  || || |||||| ||||||||||  | ||
Sbjct: 1182 agtagtgtacatggaacaacattgatcagaggcgggccagtaatgggatgactc--gcaa 1125

                                                                        
Query: 214  cccgggagccactcatatatccaatgcaaaatttaacaaacaatcacgtgggattgtcaa 273
             || | | | ||||||||||||| |||||||||||||    |||   || |||| |||||
Sbjct: 1124 tccagcaactactcatatatcca-tgcaaaatttaac----aattttgtcggatggtcaa 1070

                                                                        
Query: 274  gc---aatgcactgaaagcaaaaggattcttccaaatttggccctagccttaatctgctg 330
            ||   | ||||| |||| ||||||||  |||||||| | |||||||  ||||||| ||| 
Sbjct: 1069 gctgaagtgcacagaaaacaaaaggacccttccaaagtaggccctaatcttaatccgcta 1010

                                                                        
Query: 331  ccatgaacggatcgacatcaccaagatcagcaataagcggctccatgtcttccgactcac 390
            ||||||| || ||||  |||||||||||||| |  ||  |||||      ||||||||||
Sbjct: 1009 ccatgaatgggtcgatgtcaccaagatcagcgacgaggagctcc------tccgactcac 956

                                                                        
Query: 391  cttcttgcgagaaatacgtagggaatggcagcaaagctctgtcgggtttcttgtaaatag 450
            ||||||| |||||||| || ||||| ||||||  |||| |||||||||||||||| || |
Sbjct: 955  cttcttgtgagaaatatgttgggaaaggcagcttagctatgtcgggtttcttgtatattg 896

                                                               
Query: 451  agtccttgacgaaaagaaagctgccttgaggaccaggaacctggcctttca 501
            ||||||| || |||| |||||||||||||||||||||||||||||||||||
Sbjct: 895  agtccttaacaaaaacaaagctgccttgaggaccaggaacctggcctttca 845
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  186 bits (94), Expect = 5e-44
 Identities = 375/463 (80%), Gaps = 23/463 (4%)
 Strand = Plus / Minus

                                                                           
Query: 36      attttatatatctatctgaatcatagcttacacaacttattaagcaaaataacttccact 95
               |||||||||||||||||||| | ||| |||||||| ||||| | ||||| || ||||| |
Sbjct: 8295073 attttatatatctatctgaagcttagattacacaaattattgaacaaaa-aagttccatt 8295015

                                                                           
Query: 96      cagtcgaccaaacaatcagctcaaaaccctaactgagtcagggccctggcatatctgcca 155
                 |||    |||||||||||||||||||||||  |||| |||||||||||| || |||||
Sbjct: 8295014 ttgtc----aaacaatcagctcaaaaccctaatcgagttagggccctggcacatttgcca 8294959

                                                                           
Query: 156     ggtaatgtacatggaacaacaatgatctg--gctggtcagtaacgggatgactcttgtaa 213
                ||| |||||||||||||||| ||||| |  || || |||||| ||||||||||  | ||
Sbjct: 8294958 agtagtgtacatggaacaacattgatcagaggcgggccagtaatgggatgactc--gcaa 8294901

                                                                           
Query: 214     cccgggagccactcatatatccaatgcaaaatttaacaaacaatcacgtgggattgtcaa 273
                || | | | ||||||||||||| |||||||||||||    |||   || |||| |||||
Sbjct: 8294900 tccagcaactactcatatatcca-tgcaaaatttaac----aattttgtcggatggtcaa 8294846

                                                                           
Query: 274     gc---aatgcactgaaagcaaaaggattcttccaaatttggccctagccttaatctgctg 330
               ||   | ||||| |||| ||||||||  |||||||| | |||||||  ||||||| ||| 
Sbjct: 8294845 gctgaagtgcacagaaaacaaaaggacccttccaaagtaggccctaatcttaatccgcta 8294786

                                                                           
Query: 331     ccatgaacggatcgacatcaccaagatcagcaataagcggctccatgtcttccgactcac 390
               ||||||| || ||||  |||||||||||||| |  ||  |||||      ||||||||||
Sbjct: 8294785 ccatgaatgggtcgatgtcaccaagatcagcgacgaggagctcc------tccgactcac 8294732

                                                                           
Query: 391     cttcttgcgagaaatacgtagggaatggcagcaaagctctgtcgggtttcttgtaaatag 450
               ||||||| |||||||| || ||||| ||||||  |||| |||||||||||||||| || |
Sbjct: 8294731 cttcttgtgagaaatatgttgggaaaggcagcttagctatgtcgggtttcttgtatattg 8294672

                                                          
Query: 451     agtccttgacgaaaagaaagctgccttgaggaccaggaacctg 493
               ||||||| || |||| |||||||||||||||||||||||||||
Sbjct: 8294671 agtccttaacaaaaacaaagctgccttgaggaccaggaacctg 8294629



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 332      catgaacggatcgacatcaccaag 355
                ||||||||||||||||| ||||||
Sbjct: 42012344 catgaacggatcgacatgaccaag 42012321
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>dbj|AP001278.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0434D08
          Length = 161266

 Score =  186 bits (94), Expect = 5e-44
 Identities = 375/463 (80%), Gaps = 23/463 (4%)
 Strand = Plus / Minus

                                                                         
Query: 36    attttatatatctatctgaatcatagcttacacaacttattaagcaaaataacttccact 95
             |||||||||||||||||||| | ||| |||||||| ||||| | ||||| || ||||| |
Sbjct: 89004 attttatatatctatctgaagcttagattacacaaattattgaacaaaa-aagttccatt 88946

                                                                         
Query: 96    cagtcgaccaaacaatcagctcaaaaccctaactgagtcagggccctggcatatctgcca 155
               |||    |||||||||||||||||||||||  |||| |||||||||||| || |||||
Sbjct: 88945 ttgtc----aaacaatcagctcaaaaccctaatcgagttagggccctggcacatttgcca 88890

                                                                         
Query: 156   ggtaatgtacatggaacaacaatgatctg--gctggtcagtaacgggatgactcttgtaa 213
              ||| |||||||||||||||| ||||| |  || || |||||| ||||||||||  | ||
Sbjct: 88889 agtagtgtacatggaacaacattgatcagaggcgggccagtaatgggatgactc--gcaa 88832

                                                                         
Query: 214   cccgggagccactcatatatccaatgcaaaatttaacaaacaatcacgtgggattgtcaa 273
              || | | | ||||||||||||| |||||||||||||    |||   || |||| |||||
Sbjct: 88831 tccagcaactactcatatatcca-tgcaaaatttaac----aattttgtcggatggtcaa 88777

                                                                         
Query: 274   gc---aatgcactgaaagcaaaaggattcttccaaatttggccctagccttaatctgctg 330
             ||   | ||||| |||| ||||||||  |||||||| | |||||||  ||||||| ||| 
Sbjct: 88776 gctgaagtgcacagaaaacaaaaggacccttccaaagtaggccctaatcttaatccgcta 88717

                                                                         
Query: 331   ccatgaacggatcgacatcaccaagatcagcaataagcggctccatgtcttccgactcac 390
             ||||||| || ||||  |||||||||||||| |  ||  |||||      ||||||||||
Sbjct: 88716 ccatgaatgggtcgatgtcaccaagatcagcgacgaggagctcc------tccgactcac 88663

                                                                         
Query: 391   cttcttgcgagaaatacgtagggaatggcagcaaagctctgtcgggtttcttgtaaatag 450
             ||||||| |||||||| || ||||| ||||||  |||| |||||||||||||||| || |
Sbjct: 88662 cttcttgtgagaaatatgttgggaaaggcagcttagctatgtcgggtttcttgtatattg 88603

                                                        
Query: 451   agtccttgacgaaaagaaagctgccttgaggaccaggaacctg 493
             ||||||| || |||| |||||||||||||||||||||||||||
Sbjct: 88602 agtccttaacaaaaacaaagctgccttgaggaccaggaacctg 88560
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>gb|AY106292.1| Zea mays PCO061640 mRNA sequence
          Length = 1384

 Score =  157 bits (79), Expect = 4e-35
 Identities = 157/183 (85%)
 Strand = Plus / Minus

                                                                        
Query: 319  cttaatctgctgccatgaacggatcgacatcaccaagatcagcaataagcggctccatgt 378
            ||||||| ||||||||||| || || |||||||||||||||||||| || ||||||| ||
Sbjct: 1077 cttaatcggctgccatgaatgggtcaacatcaccaagatcagcaatcaggggctccaagt 1018

                                                                        
Query: 379  cttccgactcaccttcttgcgagaaatacgtagggaatggcagcaaagctctgtcgggtt 438
            |||| | |||||||||  ||| ||| || ||||| ||||| ||||||||  |||| ||||
Sbjct: 1017 cttcaggctcaccttcacgcgtgaagtatgtaggaaatgggagcaaagccgtgtcaggtt 958

                                                                        
Query: 439  tcttgtaaatagagtccttgacgaaaagaaagctgccttgaggaccaggaacctggcctt 498
            |||| || ||||| ||||| ||||||| |||||| ||||||||||||||||||||||| |
Sbjct: 957  tcttatatatagaatccttaacgaaaacaaagctaccttgaggaccaggaacctggccct 898

               
Query: 499  tca 501
            |||
Sbjct: 897  tca 895



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Minus

                                                                
Query: 151  tgccaggtaatgtacatggaacaacaatgatctggctggtcagtaacgggat 202
            |||||||||||||||||||||||||| ||||| |||||| ||||||| ||||
Sbjct: 1245 tgccaggtaatgtacatggaacaacattgatcaggctggccagtaaccggat 1194
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>ref|NM_187856.1| Oryza sativa (japonica cultivar-group), Ozsa8300 predicted mRNA
          Length = 960

 Score =  145 bits (73), Expect = 2e-31
 Identities = 109/121 (90%)
 Strand = Plus / Minus

                                                                       
Query: 381 tccgactcaccttcttgcgagaaatacgtagggaatggcagcaaagctctgtcgggtttc 440
           ||||||||||||||||| |||||||| || ||||| ||||||  |||| |||||||||||
Sbjct: 905 tccgactcaccttcttgtgagaaatatgttgggaaaggcagcttagctatgtcgggtttc 846

                                                                       
Query: 441 ttgtaaatagagtccttgacgaaaagaaagctgccttgaggaccaggaacctggcctttc 500
           ||||| || |||||||| || |||| ||||||||||||||||||||||||||||||||||
Sbjct: 845 ttgtatattgagtccttaacaaaaacaaagctgccttgaggaccaggaacctggcctttc 786

            
Query: 501 a 501
           |
Sbjct: 785 a 785
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>gb|AC149540.1| Populus trichocarpa clone Pop1-111J19, complete sequence
          Length = 96953

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 278   tgcactgaaagcaaaaggatt 298
             |||||||||||||||||||||
Sbjct: 76873 tgcactgaaagcaaaaggatt 76853
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>gb|AY623109.1| Homo sapiens TAF1 RNA polymerase II, TATA box binding protein
             (TBP)-associated factor, 250kDa (TAF1) gene, complete cds
          Length = 100711

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 36    attttatatatctatctgaatcatagctt 64
             |||||| ||||||||||||| ||||||||
Sbjct: 10219 attttacatatctatctgaaacatagctt 10191
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>gb|AC099310.1| Drosophila melanogaster, chromosome 3R, region 94D-94D, BAC clone
             BACR05G05, complete sequence
          Length = 163979

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 232   atccaatgcaaaatttaacaa 252
             |||||||||||||||||||||
Sbjct: 66073 atccaatgcaaaatttaacaa 66093
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>gb|AC026742.3| Homo sapiens chromosome 5 clone CTD-3103E19, complete sequence
          Length = 149710

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 229   tatatccaatgcaaaatttaacaaa 253
             |||||||||||| ||||||||||||
Sbjct: 78713 tatatccaatgccaaatttaacaaa 78689
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>gb|AC093633.3| Homo sapiens BAC clone RP11-157M22 from 2, complete sequence
          Length = 173066

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 229   tatatccaatgcaaaatttaacaaa 253
             |||||||||||| ||||||||||||
Sbjct: 88606 tatatccaatgccaaatttaacaaa 88582
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>emb|BX548066.3| Zebrafish DNA sequence from clone CH211-226F1 in linkage group 20,
              complete sequence
          Length = 185926

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 115    ctcaaaaccctaactgagtcagggc 139
              ||||||||||||||||||| |||||
Sbjct: 159855 ctcaaaaccctaactgagtaagggc 159879
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>gb|AE003740.3| Drosophila melanogaster chromosome 3R, section 78 of 118 of the complete
              sequence
          Length = 234378

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 232    atccaatgcaaaatttaacaa 252
              |||||||||||||||||||||
Sbjct: 205424 atccaatgcaaaatttaacaa 205404
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>emb|AL590762.1|HSXDPA Homo sapiens chromosome X  sequence from 6 PACs 1 BAC and 1 cosmid,
              region GJB1-DXS559 map Xq13.1; segment 1/2, complete
              sequence
          Length = 305000

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 36     attttatatatctatctgaatcatagctt 64
              |||||| ||||||||||||| ||||||||
Sbjct: 216055 attttacatatctatctgaaacatagctt 216027
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>gb|AC166836.3| Mus musculus BAC clone RP23-17O23 from chromosome 10, complete sequence
          Length = 202804

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 119   aaaccctaactgagtcaggg 138
             ||||||||||||||||||||
Sbjct: 39989 aaaccctaactgagtcaggg 40008
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>gb|AC169506.1| Mus musculus BAC clone RP23-417L6 from chromosome 17, complete sequence
          Length = 202033

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 118   aaaaccctaactgagtcagg 137
             ||||||||||||||||||||
Sbjct: 34261 aaaaccctaactgagtcagg 34280
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>gb|AC153856.23| Mus musculus 10 BAC RP23-468J15 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 188027

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 470   gctgccttgaggaccaggaa 489
             ||||||||||||||||||||
Sbjct: 86824 gctgccttgaggaccaggaa 86805
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>gb|CP000081.1| Leishmania major chromosome 35, complete sequence
          Length = 2090491

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 100     cgaccaaacaatcagctcaa 119
               ||||||||||||||||||||
Sbjct: 1345161 cgaccaaacaatcagctcaa 1345180
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>ref|XM_365356.1| Magnaporthe grisea 70-15 hypothetical protein (MG02058.4) partial
           mRNA
          Length = 1701

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 22  cacggagattttcgattttatata 45
           |||||||||||||||| |||||||
Sbjct: 288 cacggagattttcgatgttatata 265
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>gb|AC138667.8| Mus musculus chromosome 14, clone RP24-122H16, complete sequence
          Length = 177623

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    tatatatctatctgaatcat 59
             ||||||||||||||||||||
Sbjct: 76604 tatatatctatctgaatcat 76585
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>gb|BC068087.1| Homo sapiens cDNA clone IMAGE:6261819, partial cds
          Length = 1266

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 127 actgagtcagggccctggca 146
           ||||||||||||||||||||
Sbjct: 235 actgagtcagggccctggca 216
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>gb|AC152001.3| Ornithorhynchus anatinus BAC clone OABb-256A1 from chromosome unknown,
             complete sequence
          Length = 162942

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 473   gccttgaggaccaggaacct 492
             ||||||||||||||||||||
Sbjct: 78818 gccttgaggaccaggaacct 78799
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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 357     tcagcaataagcggctccatgtct 380
               |||||||| |||||||||||||||
Sbjct: 1669321 tcagcaatcagcggctccatgtct 1669298
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>ref|XM_838342.1| Leishmania major strain Friedlin hypothetical protein (LMJ_1259)
            partial mRNA
          Length = 1911

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 100  cgaccaaacaatcagctcaa 119
            ||||||||||||||||||||
Sbjct: 1566 cgaccaaacaatcagctcaa 1547
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>gb|AC121590.2| Mus musculus BAC clone RP23-281L22 from 2, complete sequence
          Length = 167364

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 117  caaaaccctaactgagtcag 136
            ||||||||||||||||||||
Sbjct: 8398 caaaaccctaactgagtcag 8379
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>emb|AL359832.33| Human DNA sequence from clone RP11-790G19 on chromosome 10 Contains the
              5' end of the gene for transmembrane receptor Unc5H2
              (UNC5H2),the 3'end of a novel gene and two CpG islands,
              complete sequence
          Length = 195130

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 220    agccactcatatatccaatg 239
              ||||||||||||||||||||
Sbjct: 164985 agccactcatatatccaatg 164966
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>emb|AL050317.16|HSDJ94E24 Human DNA sequence from clone RP1-94E24 on chromosome 20q12 Contains
             STSs and GSSs, complete sequence
          Length = 142347

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 477   tgaggaccaggaacctggcc 496
             ||||||||||||||||||||
Sbjct: 59336 tgaggaccaggaacctggcc 59317
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>emb|BX842649.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 4/11
          Length = 349697

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 178    tgatctggctggtcagtaac 197
              ||||||||||||||||||||
Sbjct: 120827 tgatctggctggtcagtaac 120808
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>dbj|AK090980.1| Homo sapiens cDNA FLJ33661 fis, clone BRAMY2026778
          Length = 2044

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 127  actgagtcagggccctggca 146
            ||||||||||||||||||||
Sbjct: 1022 actgagtcagggccctggca 1003
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>gb|AC090486.3| Genomic sequence for  Oryza sativa (japonica cultivar-group) cultivar
             Nipponbare  clone OSJNBa0093I09, from Chromosome 10,
             complete sequence
          Length = 172434

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 340   gatcgacatcaccaagatca 359
             ||||||||||||||||||||
Sbjct: 41054 gatcgacatcaccaagatca 41035
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>gb|AC017091.8| Homo sapiens BAC clone RP11-506N2 from 4, complete sequence
          Length = 201536

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 37    ttttatatatctatctgaat 56
             ||||||||||||||||||||
Sbjct: 45631 ttttatatatctatctgaat 45650
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>gb|AF314789.1|AF314789 Alectryon kimberleyanus chloroplast maturase K-like gene, complete
            sequence
          Length = 2181

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 30   ttttcgattttatatatcta 49
            ||||||||||||||||||||
Sbjct: 2034 ttttcgattttatatatcta 2053
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 340     gatcgacatcaccaagatca 359
               ||||||||||||||||||||
Sbjct: 8559957 gatcgacatcaccaagatca 8559938
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>gb|AC158497.2| Medicago truncatula chromosome 2 BAC clone mth2-48e18, complete
             sequence
          Length = 146321

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 461   gaaaagaaagctgccttgag 480
             ||||||||||||||||||||
Sbjct: 16954 gaaaagaaagctgccttgag 16935
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>gb|AC012363.6| Homo sapiens BAC clone RP11-438O12 from 2, complete sequence
          Length = 217346

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 127   actgagtcagggccctggca 146
             ||||||||||||||||||||
Sbjct: 63218 actgagtcagggccctggca 63237
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>dbj|AP003683.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0431G06
          Length = 140466

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 332    catgaacggatcgacatcaccaag 355
              ||||||||||||||||| ||||||
Sbjct: 114421 catgaacggatcgacatgaccaag 114398
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>gb|AC158804.3| Mus musculus 10 BAC RP24-354M22 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 151309

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 470    gctgccttgaggaccaggaa 489
              ||||||||||||||||||||
Sbjct: 144904 gctgccttgaggaccaggaa 144885
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>emb|CR381567.9| Zebrafish DNA sequence from clone DKEY-115O4 in linkage group 23,
              complete sequence
          Length = 142417

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 71     cttattaagcaaaataactt 90
              ||||||||||||||||||||
Sbjct: 125956 cttattaagcaaaataactt 125975
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>emb|CT010445.12| Mouse DNA sequence from clone RP23-285G1 on chromosome 17, complete
             sequence
          Length = 123987

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 118   aaaaccctaactgagtcagg 137
             ||||||||||||||||||||
Sbjct: 67329 aaaaccctaactgagtcagg 67310
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 340     gatcgacatcaccaagatca 359
               ||||||||||||||||||||
Sbjct: 8565056 gatcgacatcaccaagatca 8565037
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>emb|AL732404.7| Mouse DNA sequence from clone RP23-177D21 on chromosome 2, complete
              sequence
          Length = 220275

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 117    caaaaccctaactgagtcag 136
              ||||||||||||||||||||
Sbjct: 172109 caaaaccctaactgagtcag 172090


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,612,342
Number of Sequences: 3902068
Number of extensions: 4612342
Number of successful extensions: 79444
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79255
Number of HSP's gapped (non-prelim): 189
length of query: 501
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 479
effective length of database: 17,147,199,772
effective search space: 8213508690788
effective search space used: 8213508690788
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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