ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart36h02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY857763.1| Triticum monococcum peroxidase 9 (POX9) mRNA, par... 100 4e-18
2gb|AC132614.3| Mus musculus BAC clone RP23-298K1 from 6, complet... 42 0.77
3gb|AC125410.4| Mus musculus BAC clone RP23-146N3 from 3, complet... 40 3.0

>gb|AY857763.1| Triticum monococcum peroxidase 9 (POX9) mRNA, partial cds
          Length = 760

 Score = 99.6 bits (50), Expect = 4e-18
 Identities = 68/74 (91%)
 Strand = Plus / Minus

                                                                       
Query: 164 ctcacacgctttagcaatcacggcaactaaacaatttcttacatggcggaggcatggccc 223
           ||||||||||| ||||| |||||| ||||| |||| ||||||||||||| ||||||||||
Sbjct: 655 ctcacacgcttcagcaagcacggcgactaaccaatctcttacatggcggcggcatggccc 596

                         
Query: 224 tcgtcgctggcggt 237
           ||||||||||||||
Sbjct: 595 tcgtcgctggcggt 582



 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                       
Query: 88  actcattttattacaacatcacaattataaagaaccactagtaccatgacatgatcatag 147
           ||||| |||||||||||||||| ||||   | ||||||||| ||||||||| |||| |||
Sbjct: 726 actcactttattacaacatcacgattacgcaaaaccactagcaccatgacacgatcgtag 667

             
Query: 148 cg 149
           ||
Sbjct: 666 cg 665



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>gb|AC132614.3| Mus musculus BAC clone RP23-298K1 from 6, complete sequence
          Length = 198160

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 41     ggtaggaagcatatatatata 61
              |||||||||||||||||||||
Sbjct: 181185 ggtaggaagcatatatatata 181205



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>gb|AC125410.4| Mus musculus BAC clone RP23-146N3 from 3, complete sequence
          Length = 213701

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 23    atgggaacaacctcataggg 42
             ||||||||||||||||||||
Sbjct: 96183 atgggaacaacctcataggg 96202


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,151,680
Number of Sequences: 3902068
Number of extensions: 11151680
Number of successful extensions: 54034
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54028
Number of HSP's gapped (non-prelim): 6
length of query: 237
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 215
effective length of database: 17,147,199,772
effective search space: 3686647950980
effective search space used: 3686647950980
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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