ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart36g12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_470158.1| Oryza sativa (japonica cultivar-group), mRNA 94 4e-16
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 94 4e-16
3gb|AC096687.5| Oryza sativa chromosome 3 BAC OSJNBa0010E04 genom... 94 4e-16
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 94 4e-16
5gb|AC133778.4| Oryza sativa chromosome 3 BAC OSJNBb0027B08 genom... 94 4e-16
6dbj|AK108175.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 4e-16
7dbj|AK100515.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 4e-16
8gb|AY105409.1| Zea mays PCO095801 mRNA sequence 84 4e-13
9dbj|AK063239.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 2e-11
10gb|AC122528.3| Mus musculus BAC clone RP24-506F15 from chromosom... 46 0.080
11gb|AC162467.6| Mus musculus 10 BAC RP24-528H20 (Roswell Park Can... 46 0.080
12dbj|AK159069.1| Mus musculus visual cortex cDNA, RIKEN full-leng... 46 0.080
13ref|XM_346332.2| PREDICTED: Rattus norvegicus similar to small n... 46 0.080
14gb|AC153496.4| Mus musculus 10 BAC RP23-373D1 (Roswell Park Canc... 46 0.080
15gb|AC132304.3| Mus musculus BAC clone RP24-284M17 from 10, compl... 44 0.31
16dbj|AP006428.1| Lotus japonicus genomic DNA, chromosome 5, clone... 44 0.31
17gb|AC162379.2| Mus musculus BAC clone RP23-132A15 from chromosom... 42 1.2
18gb|AC164546.2| Mus musculus BAC clone RP24-189C11 from chromosom... 42 1.2
19gb|DP000017.1| Sus scrofa target 1 genomic scaffold 42 1.2
20gb|AC125006.9| Mus musculus chromosome 3, clone RP24-157K20, com... 42 1.2
21gb|AC164292.4| Mus musculus BAC clone RP24-177C20 from chromosom... 42 1.2
22gb|AC139883.8| Mus musculus chromosome 16, clone RP24-304O16, co... 42 1.2
23gb|AC092478.2| Sus scrofa clone RP44-360A14, complete sequence 42 1.2
24gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 42 1.2
25gb|AC107667.12| Mus musculus chromosome 3, clone RP23-187C2, com... 42 1.2
26gb|AC126032.4| Mus musculus BAC clone RP24-94B12 from chromosome... 42 1.2
27gb|AC129607.3| Mus musculus BAC clone RP23-133N3 from 5, complet... 42 1.2
28gb|AC161149.6| Mus musculus BAC clone RP23-350B16 from chromosom... 42 1.2
29dbj|AB168550.1| Macaca fascicularis testis cDNA clone: QtsA-1296... 42 1.2
30ref|XM_235782.3| PREDICTED: Rattus norvegicus kelch repeat and B... 42 1.2
31emb|AL390334.4|CNS06C7N Human chromosome 14 DNA sequence BAC R-6... 42 1.2
32gb|AY098527.1| Ananas comosus epoxide hydrolase mRNA, complete cds 42 1.2
33gb|AC133168.3| Mus musculus BAC clone RP24-217I2 from 1, complet... 42 1.2
34gb|AC173339.1| Mus musculus BAC clone RP24-221C22 from chromosom... 42 1.2
35gb|AC163644.4| Mus musculus BAC clone RP24-394I24 from chromosom... 42 1.2
36gb|AC026911.15| Mus musculus chromosome 1, clone RP23-190F21, co... 42 1.2
37emb|AL772258.9| Mouse DNA sequence from clone RP23-337P24 on chr... 42 1.2
38gb|CP000079.1| Leishmania major strain Friedlin chromosome 27, c... 40 4.9
39gb|DQ453511.1| Sus scrofa breed Large White prolactin receptor (... 40 4.9
40gb|AC101915.7| Mus musculus chromosome 1, clone RP24-388P13, com... 40 4.9
41emb|CT009544.6| Mouse DNA sequence from clone RP23-32E1 on chrom... 40 4.9
42gb|AC130544.3| Mus musculus BAC clone RP24-209I17 from chromosom... 40 4.9
43gb|AC127349.3| Mus musculus BAC clone RP23-62M5 from chromosome ... 40 4.9
44gb|AC152503.5| Mus musculus BAC clone RP23-190G10 from chromosom... 40 4.9
45gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 4.9
46emb|AL135793.13| Human DNA sequence from clone RP11-296H2 on chr... 40 4.9
47gb|AC166100.2| Mus musculus BAC clone RP24-64H18 from chromosome... 40 4.9
48gb|AC074111.2| Arabidopsis thaliana chromosome 1 BAC T18N24 geno... 40 4.9
49gb|AC161479.5| Pan troglodytes BAC clone CH251-168J1 from chromo... 40 4.9
50gb|AC069426.9| Homo sapiens 3 BAC RP11-200O17 (Roswell Park Canc... 40 4.9
51gb|AC155295.2| Mus musculus BAC clone RP24-329L16 from chromosom... 40 4.9
52gb|AC140776.6| Mus musculus chromosome 1, clone RP23-284K5, comp... 40 4.9
53gb|AC097523.4| Homo sapiens BAC clone RP11-597P14 from 2, comple... 40 4.9
54gb|AC093698.5| Homo sapiens BAC clone RP11-806A20 from 2, comple... 40 4.9
55gb|AC154289.1| Mus musculus BAC clone RP23-449E11 from chromosom... 40 4.9
56gb|AC159464.1| Pan troglodytes BAC clone CH251-505P8 from chromo... 40 4.9
57gb|AC012152.13| Homo sapiens 3 BAC CTC-552C10 (Cal Tech Human BA... 40 4.9
58gb|AC155838.7| Mus musculus 6 BAC RP24-441P8 (Roswell Park Cance... 40 4.9
59gb|AC007505.4|AC007505 Arabidopsis thaliana chromosome I BAC F28... 40 4.9
60gb|AC117766.6| Mus musculus chromosome 1, clone RP24-507L6, comp... 40 4.9
61gb|AC124718.4| Mus musculus BAC clone RP23-373N7 from 1, complet... 40 4.9
62gb|AC101951.11| Mus musculus chromosome 1, clone RP24-153P16, co... 40 4.9
63emb|AL805981.11| Mouse DNA sequence from clone RP23-275G4 on chr... 40 4.9 
>ref|XM_470158.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1017

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 68/75 (90%)
 Strand = Plus / Minus

                                                                       
Query: 295 gaacttggcgatgaagtcgtagatgtggtcgctgacctcctgcgcccgctcctgctggat 354
           |||||||| |||||||| ||||||  |||||||||||||||  |||| ||||||||||||
Sbjct: 999 gaacttggtgatgaagttgtagataaggtcgctgacctcctcagccctctcctgctggat 940

                          
Query: 355 gaagtggccggcgcc 369
           |||||||||||||||
Sbjct: 939 gaagtggccggcgcc 925
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 68/75 (90%)
 Strand = Plus / Plus

                                                                            
Query: 295      gaacttggcgatgaagtcgtagatgtggtcgctgacctcctgcgcccgctcctgctggat 354
                |||||||| |||||||| ||||||  |||||||||||||||  |||| ||||||||||||
Sbjct: 34521810 gaacttggtgatgaagttgtagataaggtcgctgacctcctcagccctctcctgctggat 34521869

                               
Query: 355      gaagtggccggcgcc 369
                |||||||||||||||
Sbjct: 34521870 gaagtggccggcgcc 34521884
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>gb|AC096687.5| Oryza sativa chromosome 3 BAC OSJNBa0010E04 genomic sequence,
            complete sequence
          Length = 117505

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 68/75 (90%)
 Strand = Plus / Minus

                                                                        
Query: 295  gaacttggcgatgaagtcgtagatgtggtcgctgacctcctgcgcccgctcctgctggat 354
            |||||||| |||||||| ||||||  |||||||||||||||  |||| ||||||||||||
Sbjct: 4357 gaacttggtgatgaagttgtagataaggtcgctgacctcctcagccctctcctgctggat 4298

                           
Query: 355  gaagtggccggcgcc 369
            |||||||||||||||
Sbjct: 4297 gaagtggccggcgcc 4283
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 68/75 (90%)
 Strand = Plus / Plus

                                                                            
Query: 295      gaacttggcgatgaagtcgtagatgtggtcgctgacctcctgcgcccgctcctgctggat 354
                |||||||| |||||||| ||||||  |||||||||||||||  |||| ||||||||||||
Sbjct: 34611882 gaacttggtgatgaagttgtagataaggtcgctgacctcctcagccctctcctgctggat 34611941

                               
Query: 355      gaagtggccggcgcc 369
                |||||||||||||||
Sbjct: 34611942 gaagtggccggcgcc 34611956
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>gb|AC133778.4| Oryza sativa chromosome 3 BAC OSJNBb0027B08 genomic sequence, complete
              sequence
          Length = 129302

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 68/75 (90%)
 Strand = Plus / Minus

                                                                          
Query: 295    gaacttggcgatgaagtcgtagatgtggtcgctgacctcctgcgcccgctcctgctggat 354
              |||||||| |||||||| ||||||  |||||||||||||||  |||| ||||||||||||
Sbjct: 121523 gaacttggtgatgaagttgtagataaggtcgctgacctcctcagccctctcctgctggat 121464

                             
Query: 355    gaagtggccggcgcc 369
              |||||||||||||||
Sbjct: 121463 gaagtggccggcgcc 121449
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>dbj|AK108175.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-140-A05, full
            insert sequence
          Length = 1264

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 68/75 (90%)
 Strand = Plus / Minus

                                                                        
Query: 295  gaacttggcgatgaagtcgtagatgtggtcgctgacctcctgcgcccgctcctgctggat 354
            |||||||| |||||||| ||||||  |||||||||||||||  |||| ||||||||||||
Sbjct: 1070 gaacttggtgatgaagttgtagataaggtcgctgacctcctcagccctctcctgctggat 1011

                           
Query: 355  gaagtggccggcgcc 369
            |||||||||||||||
Sbjct: 1010 gaagtggccggcgcc 996
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>dbj|AK100515.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023100B19, full
            insert sequence
          Length = 2699

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 68/75 (90%)
 Strand = Plus / Minus

                                                                        
Query: 295  gaacttggcgatgaagtcgtagatgtggtcgctgacctcctgcgcccgctcctgctggat 354
            |||||||| |||||||| ||||||  |||||||||||||||  |||| ||||||||||||
Sbjct: 2638 gaacttggtgatgaagttgtagataaggtcgctgacctcctcagccctctcctgctggat 2579

                           
Query: 355  gaagtggccggcgcc 369
            |||||||||||||||
Sbjct: 2578 gaagtggccggcgcc 2564
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>gb|AY105409.1| Zea mays PCO095801 mRNA sequence
          Length = 741

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 69/78 (88%)
 Strand = Plus / Minus

                                                                       
Query: 292 tcagaacttggcgatgaagtcgtagatgtggtcgctgacctcctgcgcccgctcctgctg 351
           ||||||||||| |||||||||||||||||| | ||||||||| |  |||  |||||||||
Sbjct: 624 tcagaacttggagatgaagtcgtagatgtgctggctgacctcgtcggccttctcctgctg 565

                             
Query: 352 gatgaagtggccggcgcc 369
           || |||||||||||||||
Sbjct: 564 gacgaagtggccggcgcc 547
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>dbj|AK063239.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-112-G02, full
            insert sequence
          Length = 1293

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 57/63 (90%)
 Strand = Plus / Minus

                                                                        
Query: 307  gaagtcgtagatgtggtcgctgacctcctgcgcccgctcctgctggatgaagtggccggc 366
            ||||| ||||||  |||||||||||||||  |||| ||||||||||||||||||||||||
Sbjct: 1058 gaagttgtagataaggtcgctgacctcctcagccctctcctgctggatgaagtggccggc 999

               
Query: 367  gcc 369
            |||
Sbjct: 998  gcc 996
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>gb|AC122528.3| Mus musculus BAC clone RP24-506F15 from chromosome 9, complete sequence
          Length = 142071

 Score = 46.1 bits (23), Expect = 0.080
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 72    acacatgggcatacacatacaca 94
             |||||||||||||||||||||||
Sbjct: 85091 acacatgggcatacacatacaca 85113
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>gb|AC162467.6| Mus musculus 10 BAC RP24-528H20 (Roswell Park Cancer Institute
            (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 172752

 Score = 46.1 bits (23), Expect = 0.080
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 72   acacatgggcatacacatacaca 94
            |||||||||||||||||||||||
Sbjct: 7701 acacatgggcatacacatacaca 7723
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>dbj|AK159069.1| Mus musculus visual cortex cDNA, RIKEN full-length enriched
           library, clone:K530049E07 product:unclassifiable, full
           insert sequence
          Length = 1266

 Score = 46.1 bits (23), Expect = 0.080
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 72  acacatgggcatacacatacaca 94
           |||||||||||||||||||||||
Sbjct: 184 acacatgggcatacacatacaca 162
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>ref|XM_346332.2| PREDICTED: Rattus norvegicus similar to small nuclear
           ribonucleoparticle-associated protein (LOC367865), mRNA
          Length = 937

 Score = 46.1 bits (23), Expect = 0.080
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 253 tgcacggctggttcttttctttt 275
           |||||||||||||||||||||||
Sbjct: 644 tgcacggctggttcttttctttt 622
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>gb|AC153496.4| Mus musculus 10 BAC RP23-373D1 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 149839

 Score = 46.1 bits (23), Expect = 0.080
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 72     acacatgggcatacacatacaca 94
              |||||||||||||||||||||||
Sbjct: 143485 acacatgggcatacacatacaca 143507
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>gb|AC132304.3| Mus musculus BAC clone RP24-284M17 from 10, complete sequence
          Length = 191906

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 163    aacaacaaatgaaagtacgaaa 184
              ||||||||||||||||||||||
Sbjct: 115195 aacaacaaatgaaagtacgaaa 115216
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>dbj|AP006428.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT04J15, TM0321,
             complete sequence
          Length = 127049

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 163   aacaacaaatgaaagtacgaaa 184
             ||||||||||||||||||||||
Sbjct: 71689 aacaacaaatgaaagtacgaaa 71710
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>gb|AC162379.2| Mus musculus BAC clone RP23-132A15 from chromosome 12, complete sequence
          Length = 238126

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 257    cggctggttcttttcttttcc 277
              |||||||||||||||||||||
Sbjct: 186436 cggctggttcttttcttttcc 186416
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>gb|AC164546.2| Mus musculus BAC clone RP24-189C11 from chromosome 17, complete
             sequence
          Length = 156583

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 70    atacacatgggcatacacatacaca 94
             ||||||||| |||||||||||||||
Sbjct: 88606 atacacatgtgcatacacatacaca 88582
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>gb|DP000017.1| Sus scrofa target 1 genomic scaffold
          Length = 1471440

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 70      atacacatgggcatacacatacaca 94
               ||||||||| |||||||||||||||
Sbjct: 1239134 atacacatgtgcatacacatacaca 1239110
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>gb|AC125006.9| Mus musculus chromosome 3, clone RP24-157K20, complete sequence
          Length = 169078

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 261   tggttcttttcttttccttct 281
             |||||||||||||||||||||
Sbjct: 54910 tggttcttttcttttccttct 54930
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>gb|AC164292.4| Mus musculus BAC clone RP24-177C20 from chromosome 3, complete sequence
          Length = 185822

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 70    atacacatgggcatacacatacaca 94
             ||||||||||||| |||||||||||
Sbjct: 40606 atacacatgggcacacacatacaca 40582
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>gb|AC139883.8| Mus musculus chromosome 16, clone RP24-304O16, complete sequence
          Length = 138043

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 74     acatgggcatacacatacaca 94
              |||||||||||||||||||||
Sbjct: 113433 acatgggcatacacatacaca 113413
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>gb|AC092478.2| Sus scrofa clone RP44-360A14, complete sequence
          Length = 161008

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 70     atacacatgggcatacacatacaca 94
              ||||||||| |||||||||||||||
Sbjct: 100698 atacacatgtgcatacacatacaca 100674
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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 345    cctgctggatgaagtggccgg 365
              |||||||||||||||||||||
Sbjct: 208500 cctgctggatgaagtggccgg 208520
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>gb|AC107667.12| Mus musculus chromosome 3, clone RP23-187C2, complete sequence
          Length = 229632

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 70     atacacatgggcatacacatacaca 94
              ||||||||||||| |||||||||||
Sbjct: 169778 atacacatgggcacacacatacaca 169754
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>gb|AC126032.4| Mus musculus BAC clone RP24-94B12 from chromosome 1, complete sequence
          Length = 207475

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 70    atacacatgggcatacacatacaca 94
             |||||| ||||||||||||||||||
Sbjct: 99936 atacacctgggcatacacatacaca 99960



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 70    atacacatgggcatacacatacaca 94
             ||||||||||||||||||| |||||
Sbjct: 99758 atacacatgggcatacacacacaca 99782



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 70    atacacatgggcatacacatacaca 94
             ||||||||||||||||||| |||||
Sbjct: 99721 atacacatgggcatacacacacaca 99745



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 70    atacacatgggcatacacatacaca 94
             ||||||||||||||||||| |||||
Sbjct: 99512 atacacatgggcatacacacacaca 99536
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>gb|AC129607.3| Mus musculus BAC clone RP23-133N3 from 5, complete sequence
          Length = 186120

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 70    atacacatgggcatacacata 90
             |||||||||||||||||||||
Sbjct: 61187 atacacatgggcatacacata 61167
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>gb|AC161149.6| Mus musculus BAC clone RP23-350B16 from chromosome 1, complete sequence
          Length = 217329

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 67    gaaatacacatgggcatacacatacacag 95
             ||||||||||| |||| ||||||||||||
Sbjct: 85413 gaaatacacataggcacacacatacacag 85385
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>dbj|AB168550.1| Macaca fascicularis testis cDNA clone: QtsA-12966, similar to human
            COX10 homolog, cytochrome c oxidase assembly protein,heme
            A: farnesyltransferase (yeast) (COX10), nuclear
            geneencoding mitochondrial protein, mRNA, RefSeq:
            NM_001303.2
          Length = 2426

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 73   cacatgggcatacacatacacagct 97
            |||||||| ||||||||||||||||
Sbjct: 1232 cacatgggtatacacatacacagct 1256
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>ref|XM_235782.3| PREDICTED: Rattus norvegicus kelch repeat and BTB (POZ) domain
           containing 3 (predicted) (Kbtbd3_predicted), mRNA
          Length = 1850

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 158 atttgaacaacaaatgaaagt 178
           |||||||||||||||||||||
Sbjct: 573 atttgaacaacaaatgaaagt 553
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>emb|AL390334.4|CNS06C7N Human chromosome 14 DNA sequence BAC R-664B22 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 170011

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 70    atacacatgggcatacacatacaca 94
             ||||||||||||| |||||||||||
Sbjct: 67321 atacacatgggcacacacatacaca 67345
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>gb|AY098527.1| Ananas comosus epoxide hydrolase mRNA, complete cds
          Length = 1199

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 48/57 (84%)
 Strand = Plus / Minus

                                                                     
Query: 304  gatgaagtcgtagatgtggtcgctgacctcctgcgcccgctcctgctggatgaagtg 360
            |||||||| ||||||||| ||  | || ||||  |||| ||||||||||||||||||
Sbjct: 1029 gatgaagttgtagatgtgatcagtaacttcctctgccctctcctgctggatgaagtg 973
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>gb|AC133168.3| Mus musculus BAC clone RP24-217I2 from 1, complete sequence
          Length = 169783

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 67     gaaatacacatgggcatacacatacacag 95
              ||||||||||| |||| ||||||||||||
Sbjct: 162375 gaaatacacataggcacacacatacacag 162347
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>gb|AC173339.1| Mus musculus BAC clone RP24-221C22 from chromosome 17, complete sequence
          Length = 166061

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 70     atacacatgggcatacacatacaca 94
              ||||||||| |||||||||||||||
Sbjct: 128513 atacacatgtgcatacacatacaca 128537
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>gb|AC163644.4| Mus musculus BAC clone RP24-394I24 from chromosome 16, complete sequence
          Length = 177627

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 74     acatgggcatacacatacaca 94
              |||||||||||||||||||||
Sbjct: 167110 acatgggcatacacatacaca 167090
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>gb|AC026911.15| Mus musculus chromosome 1, clone RP23-190F21, complete sequence
          Length = 239743

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 70     atacacatgggcatacacatacaca 94
              |||||| ||||||||||||||||||
Sbjct: 223380 atacacctgggcatacacatacaca 223404



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 70     atacacatgggcatacacatacaca 94
              ||||||||||||||||||| |||||
Sbjct: 223128 atacacatgggcatacacacacaca 223152



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 70     atacacatgggcatacacatacaca 94
              ||||||||||||||||||| |||||
Sbjct: 223091 atacacatgggcatacacacacaca 223115



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 70     atacacatgggcatacacatacaca 94
              ||||||||||||||||||| |||||
Sbjct: 222882 atacacatgggcatacacacacaca 222906
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>emb|AL772258.9| Mouse DNA sequence from clone RP23-337P24 on chromosome 2, complete
             sequence
          Length = 200480

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 70    atacacatgggcatacacatacaca 94
             ||||||||| |||||||||||||||
Sbjct: 96064 atacacatgtgcatacacatacaca 96088
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>gb|CP000079.1| Leishmania major strain Friedlin chromosome 27, complete sequence
          Length = 1130447

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 75      catgggcatacacatacaca 94
               ||||||||||||||||||||
Sbjct: 1093322 catgggcatacacatacaca 1093303
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>gb|DQ453511.1| Sus scrofa breed Large White prolactin receptor (PRLR) gene, partial
            cds
          Length = 1982

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 259  gctggttcttttcttttccttctc 282
            |||||||||| |||||||||||||
Sbjct: 1577 gctggttcttgtcttttccttctc 1554
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>gb|AC101915.7| Mus musculus chromosome 1, clone RP24-388P13, complete sequence
          Length = 207724

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 76    atgggcatacacatacacag 95
             ||||||||||||||||||||
Sbjct: 21704 atgggcatacacatacacag 21685
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>emb|CT009544.6| Mouse DNA sequence from clone RP23-32E1 on chromosome 13, complete
              sequence
          Length = 158218

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 68     aaatacacatgggcatacacatac 91
              ||||||||||| ||||||||||||
Sbjct: 128252 aaatacacatgagcatacacatac 128229
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>gb|AC130544.3| Mus musculus BAC clone RP24-209I17 from chromosome 19, complete
             sequence
          Length = 166863

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 70    atacacatgggcatacacat 89
             ||||||||||||||||||||
Sbjct: 81379 atacacatgggcatacacat 81360
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>gb|AC127349.3| Mus musculus BAC clone RP23-62M5 from chromosome 13, complete sequence
          Length = 193255

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 75     catgggcatacacatacaca 94
              ||||||||||||||||||||
Sbjct: 161483 catgggcatacacatacaca 161502
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>gb|AC152503.5| Mus musculus BAC clone RP23-190G10 from chromosome 16, complete
             sequence
          Length = 204940

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 71    tacacatgggcatacacatacaca 94
             |||||||| |||||||||||||||
Sbjct: 70670 tacacatgagcatacacatacaca 70647
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 320     tggtcgctgacctcctgcgc 339
               ||||||||||||||||||||
Sbjct: 3906391 tggtcgctgacctcctgcgc 3906410
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>emb|AL135793.13| Human DNA sequence from clone RP11-296H2 on chromosome 10 Contains the 3'
              end of the TACC2 gene for transforming, acidic coiled-coil
              containing protein 2 (AZU-1), the gene for a novel protein
              (FLJ25359) and two CpG islands, complete sequence
          Length = 213861

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 263    gttcttttcttttccttctc 282
              ||||||||||||||||||||
Sbjct: 109075 gttcttttcttttccttctc 109094
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>gb|AC166100.2| Mus musculus BAC clone RP24-64H18 from chromosome 19, complete sequence
          Length = 275852

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 70    atacacatgggcatacacat 89
             ||||||||||||||||||||
Sbjct: 53496 atacacatgggcatacacat 53477
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>gb|AC074111.2| Arabidopsis thaliana chromosome 1 BAC T18N24 genomic sequence, complete
             sequence
          Length = 98536

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 264   ttcttttcttttccttctca 283
             ||||||||||||||||||||
Sbjct: 74939 ttcttttcttttccttctca 74920
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>gb|AC161479.5| Pan troglodytes BAC clone CH251-168J1 from chromosome unknown, complete
             sequence
          Length = 206985

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 71    tacacatgggcatacacatacaca 94
             |||||||| |||||||||||||||
Sbjct: 53102 tacacatgtgcatacacatacaca 53079
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>gb|AC069426.9| Homo sapiens 3 BAC RP11-200O17 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 128500

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 74    acatgggcatacacatacacagct 97
             ||||||||||||||||| ||||||
Sbjct: 10296 acatgggcatacacataaacagct 10273
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>gb|AC155295.2| Mus musculus BAC clone RP24-329L16 from chromosome 13, complete
             sequence
          Length = 166534

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 68    aaatacacatgggcatacacatac 91
             ||||||||||| ||||||||||||
Sbjct: 34567 aaatacacatgagcatacacatac 34590
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>gb|AC140776.6| Mus musculus chromosome 1, clone RP23-284K5, complete sequence
          Length = 223196

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 131    caactgaggagatgaactaa 150
              ||||||||||||||||||||
Sbjct: 179133 caactgaggagatgaactaa 179152
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>gb|AC097523.4| Homo sapiens BAC clone RP11-597P14 from 2, complete sequence
          Length = 108711

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 72    acacatgggcatacacatacacag 95
             ||||||| ||||||||||||||||
Sbjct: 57111 acacatgtgcatacacatacacag 57134
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>gb|AC093698.5| Homo sapiens BAC clone RP11-806A20 from 2, complete sequence
          Length = 136220

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 69     aatacacatgggcatacacataca 92
              |||||||||||||| |||||||||
Sbjct: 111967 aatacacatgggcacacacataca 111944
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>gb|AC154289.1| Mus musculus BAC clone RP23-449E11 from chromosome 16, complete sequence
          Length = 191617

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 261    tggttcttttcttttccttc 280
              ||||||||||||||||||||
Sbjct: 104214 tggttcttttcttttccttc 104233
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>gb|AC159464.1| Pan troglodytes BAC clone CH251-505P8 from chromosome unknown, complete
              sequence
          Length = 175216

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 71     tacacatgggcatacacatacaca 94
              |||||||| |||||||||||||||
Sbjct: 148652 tacacatgtgcatacacatacaca 148629
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>gb|AC012152.13| Homo sapiens 3 BAC CTC-552C10 (Cal Tech Human BAC Library C) complete
              sequence
          Length = 180194

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 74     acatgggcatacacatacacagct 97
              ||||||||||||||||| ||||||
Sbjct: 175334 acatgggcatacacataaacagct 175311
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>gb|AC155838.7| Mus musculus 6 BAC RP24-441P8 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 196288

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 275   tccttctcagatgttgttca 294
             ||||||||||||||||||||
Sbjct: 39830 tccttctcagatgttgttca 39849
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>gb|AC007505.4|AC007505 Arabidopsis thaliana chromosome I BAC F28L22 genomic sequence,
           complete sequence
          Length = 134499

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 264 ttcttttcttttccttctca 283
           ||||||||||||||||||||
Sbjct: 804 ttcttttcttttccttctca 785
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>gb|AC117766.6| Mus musculus chromosome 1, clone RP24-507L6, complete sequence
          Length = 190180

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 131    caactgaggagatgaactaa 150
              ||||||||||||||||||||
Sbjct: 183858 caactgaggagatgaactaa 183839
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>gb|AC124718.4| Mus musculus BAC clone RP23-373N7 from 1, complete sequence
          Length = 201807

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 131   caactgaggagatgaactaa 150
             ||||||||||||||||||||
Sbjct: 79938 caactgaggagatgaactaa 79919
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>gb|AC101951.11| Mus musculus chromosome 1, clone RP24-153P16, complete sequence
          Length = 174693

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 76    atgggcatacacatacacag 95
             ||||||||||||||||||||
Sbjct: 30954 atgggcatacacatacacag 30973
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>emb|AL805981.11| Mouse DNA sequence from clone RP23-275G4 on chromosome 4, complete
             sequence
          Length = 210185

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 266   cttttcttttccttctcaga 285
             ||||||||||||||||||||
Sbjct: 69209 cttttcttttccttctcaga 69190


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,133,015
Number of Sequences: 3902068
Number of extensions: 4133015
Number of successful extensions: 124667
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 124290
Number of HSP's gapped (non-prelim): 378
length of query: 369
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 347
effective length of database: 17,147,199,772
effective search space: 5950078320884
effective search space used: 5950078320884
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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