ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart36g11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1OR6C2_HUMAN (Q9NZP2) Olfactory receptor 6C2 (HSA3) 32 0.81
2WRT1_CAEEL (Q94128) Warthog protein 1 precursor [Contains: Warth... 31 2.4
3AMC1_ORYSA (P27940) Alpha-amylase isozyme C (EC 3.2.1.1) (1,4-al... 30 3.1
4YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c i... 29 9.0

>OR6C2_HUMAN (Q9NZP2) Olfactory receptor 6C2 (HSA3)|
          Length = 312

 Score = 32.3 bits (72), Expect = 0.81
 Identities = 13/41 (31%), Positives = 28/41 (68%), Gaps = 3/41 (7%)
 Frame = +3

Query: 369 ILRIGCT---IVSIRTLLISIVAVAITLVCILLGRLFVLAT 482
           +L+I C+   ++    +L+++ A+ ITLVC++L  L+++ T
Sbjct: 182 LLKISCSDTWVIEQMVILMAVFALIITLVCVILSYLYIVRT 222



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>WRT1_CAEEL (Q94128) Warthog protein 1 precursor [Contains: Warthog protein 1|
           N-product; Warthog protein 1 C-product]
          Length = 485

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +2

Query: 329 NCHNQSIHSFAC*DLAHWVHHSKHQDPVDIHSSCCHYPGLHPAGE 463
           NC  +   S +C +   WV   K  D  D+   CCHY GL  A E
Sbjct: 98  NCPRE-FSSSSCSNPMTWVGGFKASDNGDLSLQCCHYEGLRFAQE 141



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>AMC1_ORYSA (P27940) Alpha-amylase isozyme C (EC 3.2.1.1) (1,4-alpha-D-glucan|
           glucanohydrolase) (Isozyme 1B)
          Length = 348

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 448 ASCWGGCLFWLRP 486
           A+CWGGC  W RP
Sbjct: 85  ATCWGGCTIWTRP 97



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>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome|
           II
          Length = 473

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 10/15 (66%), Positives = 14/15 (93%)
 Frame = -1

Query: 515 IGSSNVRLSWGRSQN 471
           +G+S +RLSWGR+QN
Sbjct: 363 LGNSRIRLSWGRNQN 377


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,128,448
Number of Sequences: 219361
Number of extensions: 1000369
Number of successful extensions: 2346
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2346
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3985467738
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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