ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart36g11 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009238.1| Triticum aestivum clone wlk1.pk0001.f8:fis, full insert mRNA sequence Length = 1160 Score = 377 bits (190), Expect = e-101 Identities = 199/202 (98%) Strand = Plus / Minus Query: 320 gctgatcgtaactgccataaccagagtatccatagttttgcatgctaggatcttgcgcat 379 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 843 gctgctcgtaactgccataaccagagtatccatagttttgcatgctaggatcttgcgcat 784 Query: 380 tgggtgcaccatagtaagcatcaggaccctgttgatatccatagtagctgttgccattac 439 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 783 tgggtgcaccatagtatgcatcaggaccctgttgatatccatagtagctgttgccattac 724 Query: 440 cctggtttgcatcctgctggggaggctgtttgttttggctacggccccatgaaagacgaa 499 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 723 cctggtttgcatcctgctggggaggctgtttgttttggctacggccccatgaaaggcgaa 664 Query: 500 cattggaactaccaatctgaga 521 |||||||||||||||||||||| Sbjct: 663 cattggaactaccaatctgaga 642 Score = 323 bits (163), Expect = 3e-85 Identities = 207/219 (94%), Gaps = 2/219 (0%) Strand = Plus / Minus Query: 23 aaataacattaaaagcttaactcagtaactgacatagttcgataattttaaaaccaagag 82 |||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||| Sbjct: 1138 aaataacattaaaagcttaactcagtcatggacatagttcgataattt-aaaaccaagag 1080 Query: 83 aagcactgaatagaactagagttactgcccaccagtcaaagtactactagatacgaccca 142 ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| Sbjct: 1079 aagcactgaatagaactagagctactgcccaacagtcaaagtactactagatacgaccca 1020 Query: 143 tcttacaaaacaaggacacctatacaatgactcataacgcggtagcattcagttcatgca 202 |||||| |||||||||||||||||| || |||||| |||||||||||||||||||||||| Sbjct: 1019 tcttac-aaacaaggacacctatacgataactcatgacgcggtagcattcagttcatgca 961 Query: 203 gctctgaatctctgattgagctccatcgcctcgatggtc 241 |||||||||||||||||| ||||||||||||| |||||| Sbjct: 960 gctctgaatctctgattgcgctccatcgcctcaatggtc 922
>ref|XM_478418.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1302 Score = 83.8 bits (42), Expect = 5e-13 Identities = 132/160 (82%), Gaps = 9/160 (5%) Strand = Plus / Minus Query: 320 gctgatcgtaactgccataaccagagtatccatagt---tttgcatgctaggatcttgcg 376 |||| |||||| ||||||| ||||| |||||||||| ||||| |||||||| || | Sbjct: 1168 gctgttcgtaattgccatagccagaatatccatagtagttttgcgcactaggatcctgtg 1109 Query: 377 cattgggtgcaccatagt---aagcatcaggaccctgttgatatccatagtagctgttgc 433 |||||||||||||||||| ||| |||| |||||||| ||||||||||| ||||| Sbjct: 1108 cattgggtgcaccatagtaagaagaatcatagccctgttggtatccatagta---gttgc 1052 Query: 434 cattaccctggtttgcatcctgctggggaggctgtttgtt 473 |||| | |||||| |||||||||||||||| ||| ||||| Sbjct: 1051 cattccactggttggcatcctgctggggagcctgcttgtt 1012
>dbj|AK061900.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-H03, full insert sequence Length = 1152 Score = 83.8 bits (42), Expect = 5e-13 Identities = 132/160 (82%), Gaps = 9/160 (5%) Strand = Plus / Minus Query: 320 gctgatcgtaactgccataaccagagtatccatagt---tttgcatgctaggatcttgcg 376 |||| |||||| ||||||| ||||| |||||||||| ||||| |||||||| || | Sbjct: 764 gctgttcgtaattgccatagccagaatatccatagtagttttgcgcactaggatcctgtg 705 Query: 377 cattgggtgcaccatagt---aagcatcaggaccctgttgatatccatagtagctgttgc 433 |||||||||||||||||| ||| |||| |||||||| ||||||||||| ||||| Sbjct: 704 cattgggtgcaccatagtaagaagaatcatagccctgttggtatccatagta---gttgc 648 Query: 434 cattaccctggtttgcatcctgctggggaggctgtttgtt 473 |||| | |||||| |||||||||||||||| ||| ||||| Sbjct: 647 cattccactggttggcatcctgctggggagcctgcttgtt 608
>dbj|AK065559.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013031C16, full insert sequence Length = 1693 Score = 83.8 bits (42), Expect = 5e-13 Identities = 132/160 (82%), Gaps = 9/160 (5%) Strand = Plus / Minus Query: 320 gctgatcgtaactgccataaccagagtatccatagt---tttgcatgctaggatcttgcg 376 |||| |||||| ||||||| ||||| |||||||||| ||||| |||||||| || | Sbjct: 1418 gctgttcgtaattgccatagccagaatatccatagtagttttgcgcactaggatcctgtg 1359 Query: 377 cattgggtgcaccatagt---aagcatcaggaccctgttgatatccatagtagctgttgc 433 |||||||||||||||||| ||| |||| |||||||| ||||||||||| ||||| Sbjct: 1358 cattgggtgcaccatagtaagaagaatcatagccctgttggtatccatagta---gttgc 1302 Query: 434 cattaccctggtttgcatcctgctggggaggctgtttgtt 473 |||| | |||||| |||||||||||||||| ||| ||||| Sbjct: 1301 cattccactggttggcatcctgctggggagcctgcttgtt 1262
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 79.8 bits (40), Expect = 8e-12 Identities = 124/150 (82%), Gaps = 9/150 (6%) Strand = Plus / Minus Query: 320 gctgatcgtaactgccataaccagagtatccatagt---tttgcatgctaggatcttgcg 376 |||| |||||| ||||||| ||||| |||||||||| ||||| |||||||| || | Sbjct: 19870509 gctgttcgtaattgccatagccagaatatccatagtagttttgcgcactaggatcctgtg 19870450 Query: 377 cattgggtgcaccatagt---aagcatcaggaccctgttgatatccatagtagctgttgc 433 |||||||||||||||||| ||| |||| |||||||| ||||||||||| ||||| Sbjct: 19870449 cattgggtgcaccatagtaagaagaatcatagccctgttggtatccatagta---gttgc 19870393 Query: 434 cattaccctggtttgcatcctgctggggag 463 |||| | |||||| |||||||||||||||| Sbjct: 19870392 cattccactggttggcatcctgctggggag 19870363
>dbj|AP005103.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0036M16 Length = 158880 Score = 79.8 bits (40), Expect = 8e-12 Identities = 124/150 (82%), Gaps = 9/150 (6%) Strand = Plus / Minus Query: 320 gctgatcgtaactgccataaccagagtatccatagt---tttgcatgctaggatcttgcg 376 |||| |||||| ||||||| ||||| |||||||||| ||||| |||||||| || | Sbjct: 35159 gctgttcgtaattgccatagccagaatatccatagtagttttgcgcactaggatcctgtg 35100 Query: 377 cattgggtgcaccatagt---aagcatcaggaccctgttgatatccatagtagctgttgc 433 |||||||||||||||||| ||| |||| |||||||| ||||||||||| ||||| Sbjct: 35099 cattgggtgcaccatagtaagaagaatcatagccctgttggtatccatagta---gttgc 35043 Query: 434 cattaccctggtttgcatcctgctggggag 463 |||| | |||||| |||||||||||||||| Sbjct: 35042 cattccactggttggcatcctgctggggag 35013
>dbj|AP005320.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0650C03 Length = 144337 Score = 79.8 bits (40), Expect = 8e-12 Identities = 124/150 (82%), Gaps = 9/150 (6%) Strand = Plus / Minus Query: 320 gctgatcgtaactgccataaccagagtatccatagt---tttgcatgctaggatcttgcg 376 |||| |||||| ||||||| ||||| |||||||||| ||||| |||||||| || | Sbjct: 110668 gctgttcgtaattgccatagccagaatatccatagtagttttgcgcactaggatcctgtg 110609 Query: 377 cattgggtgcaccatagt---aagcatcaggaccctgttgatatccatagtagctgttgc 433 |||||||||||||||||| ||| |||| |||||||| ||||||||||| ||||| Sbjct: 110608 cattgggtgcaccatagtaagaagaatcatagccctgttggtatccatagta---gttgc 110552 Query: 434 cattaccctggtttgcatcctgctggggag 463 |||| | |||||| |||||||||||||||| Sbjct: 110551 cattccactggttggcatcctgctggggag 110522
>gb|BT018852.1| Zea mays clone EL01N0555H08.d mRNA sequence Length = 1780 Score = 58.0 bits (29), Expect = 3e-05 Identities = 55/63 (87%), Gaps = 3/63 (4%) Strand = Plus / Minus Query: 334 ccataaccagagtatccatagt---tttgcatgctaggatcttgcgcattgggtgcacca 390 |||||||||| ||||||||||| |||| ||||| || ||||| ||||||||||||||| Sbjct: 1452 ccataaccagggtatccatagtagttttgaatgcttgggtcttgtgcattgggtgcacca 1393 Query: 391 tag 393 ||| Sbjct: 1392 tag 1390
>gb|AY109669.1| Zea mays CL866_1 mRNA sequence Length = 1821 Score = 58.0 bits (29), Expect = 3e-05 Identities = 55/63 (87%), Gaps = 3/63 (4%) Strand = Plus / Minus Query: 334 ccataaccagagtatccatagt---tttgcatgctaggatcttgcgcattgggtgcacca 390 |||||||||| ||||||||||| |||| ||||| || ||||| ||||||||||||||| Sbjct: 1464 ccataaccagggtatccatagtagttttgaatgcttgggtcttgtgcattgggtgcacca 1405 Query: 391 tag 393 ||| Sbjct: 1404 tag 1402
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 54.0 bits (27), Expect = 5e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 352 tagttttgcatgctaggatcttgcgcattgggtgcaccatagtaagcatca 402 ||||||||| ||||||||| || ||||| |||||||||||||| |||||| Sbjct: 466107 tagttttgcgtgctaggatgctgtgcatttggtgcaccatagtatgcatca 466157
>dbj|AP000616.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone:P0514G12 Length = 138929 Score = 54.0 bits (27), Expect = 5e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 352 tagttttgcatgctaggatcttgcgcattgggtgcaccatagtaagcatca 402 ||||||||| ||||||||| || ||||| |||||||||||||| |||||| Sbjct: 11615 tagttttgcgtgctaggatgctgtgcatttggtgcaccatagtatgcatca 11665
>dbj|AP001129.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0644B06 Length = 194509 Score = 54.0 bits (27), Expect = 5e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 352 tagttttgcatgctaggatcttgcgcattgggtgcaccatagtaagcatca 402 ||||||||| ||||||||| || ||||| |||||||||||||| |||||| Sbjct: 176060 tagttttgcgtgctaggatgctgtgcatttggtgcaccatagtatgcatca 176110
>emb|AL117259.6|CNS01DRJ Human chromosome 14 DNA sequence BAC R-304M6 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 193301 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 7 gcaactggtgacccagaaataa 28 |||||||||||||||||||||| Sbjct: 127324 gcaactggtgacccagaaataa 127345
>gb|AC163036.2| Mus musculus BAC clone RP23-219G12 from chromosome 17, complete sequence Length = 217187 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 457 tggggaggctgtttgttttgg 477 ||||||||||||||||||||| Sbjct: 34654 tggggaggctgtttgttttgg 34674
>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence Length = 4837408 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 410 gttgatatccatagtagctgt 430 ||||||||||||||||||||| Sbjct: 1899502 gttgatatccatagtagctgt 1899482
>gb|AC151266.4| Mus musculus BAC clone RP24-279K24 from chromosome 17, complete sequence Length = 171074 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 457 tggggaggctgtttgttttgg 477 ||||||||||||||||||||| Sbjct: 5270 tggggaggctgtttgttttgg 5250
>emb|BX883051.1| Rattus norvegicus chromosome 20, major histocompatibility complex, assembled from 40 BACs, strain Brown Norway (BN/ssNHsd), RT1n haplotype; segment 10/11 Length = 348946 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 77 caagagaagcactgaatagaa 97 ||||||||||||||||||||| Sbjct: 4900 caagagaagcactgaatagaa 4880
>emb|AL845157.7| Mouse DNA sequence from clone RP23-343I2 on chromosome 2, complete sequence Length = 193797 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 68 ttttaaaaccaagagaagcactgaa 92 |||| |||||||||||||||||||| Sbjct: 40380 tttttaaaccaagagaagcactgaa 40404
>gb|AC114634.14| Mus musculus chromosome 8, clone RP24-116E2, complete sequence Length = 198670 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 ctcagtaactgacatagttc 62 |||||||||||||||||||| Sbjct: 66247 ctcagtaactgacatagttc 66266
>gb|AC124421.4| Mus musculus BAC clone RP24-323H7 from chromosome 10, complete sequence Length = 187081 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 440 cctggtttgcatcctgctggggag 463 |||||||| ||||||||||||||| Sbjct: 104882 cctggtttacatcctgctggggag 104905
>emb|AL161496.2|ATCHRIV8 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 8 Length = 195429 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 cagaaataacattaaaagct 39 |||||||||||||||||||| Sbjct: 154912 cagaaataacattaaaagct 154931
>gb|CP000077.1| Sulfolobus acidocaldarius DSM 639, complete genome Length = 2225959 Score = 40.1 bits (20), Expect = 7.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 31 ttaaaagcttaactcagtaactgacatagttc 62 ||||||| |||||||||| |||||||||||| Sbjct: 1435677 ttaaaaggataactcagtagctgacatagttc 1435646
>dbj|AB234881.1| Trifolium pratense mRNA for putative DNA binding protein, complete cds Length = 3067 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 476 ggctacggccccatgaaagacgaacatt 503 |||| |||||||||||||| |||||||| Sbjct: 2650 ggcttcggccccatgaaagccgaacatt 2623
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 325 tcgtaactgccataaccagagtatccat 352 |||||| ||||||||||| ||||||||| Sbjct: 21584840 tcgtaattgccataaccatagtatccat 21584867
>dbj|AK117847.1| Arabidopsis thaliana mRNA for unknown protein, complete cds, clone: RAFL18-04-O14 Length = 1730 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 cagaaataacattaaaagct 39 |||||||||||||||||||| Sbjct: 1673 cagaaataacattaaaagct 1654
>emb|CR318631.5| Zebrafish DNA sequence from clone DKEY-207D5 in linkage group 18, complete sequence Length = 189711 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 attttaaaaccaagagaagc 86 |||||||||||||||||||| Sbjct: 103568 attttaaaaccaagagaagc 103549
>emb|BX649507.3| Zebrafish DNA sequence from clone CH211-154H20 in linkage group 18, complete sequence Length = 166185 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 attttaaaaccaagagaagc 86 |||||||||||||||||||| Sbjct: 51354 attttaaaaccaagagaagc 51373
>emb|BX000347.7| Zebrafish DNA sequence from clone DKEY-66C4 in linkage group 18, complete sequence Length = 155713 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 attttaaaaccaagagaagc 86 |||||||||||||||||||| Sbjct: 61433 attttaaaaccaagagaagc 61452
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 325 tcgtaactgccataaccagagtatccat 352 |||||| ||||||||||| ||||||||| Sbjct: 21513161 tcgtaattgccataaccatagtatccat 21513188
>emb|AL844497.4|CNS08CAU Oryza sativa chromosome 12, . BAC OSJNBa0085B23 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 158019 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 325 tcgtaactgccataaccagagtatccat 352 |||||| ||||||||||| ||||||||| Sbjct: 61049 tcgtaattgccataaccatagtatccat 61022
>gb|AC139159.3| Mus musculus BAC clone RP23-119I13 from 8, complete sequence Length = 185950 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 ctcagtaactgacatagttc 62 |||||||||||||||||||| Sbjct: 159290 ctcagtaactgacatagttc 159309
>gb|AF071527.1| Arabidopsis thaliana BAC F9H3, from chromosome IV near 18.8 cM, complete sequence Length = 95519 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 cagaaataacattaaaagct 39 |||||||||||||||||||| Sbjct: 88578 cagaaataacattaaaagct 88559
>gb|U31328.1|BDU31328 Blaberus discoidalis hexamerin subunit precursor mRNA, complete cds Length = 2346 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 420 atagtagctgttgccattac 439 |||||||||||||||||||| Sbjct: 969 atagtagctgttgccattac 950 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,901,539 Number of Sequences: 3902068 Number of extensions: 3901539 Number of successful extensions: 71586 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71412 Number of HSP's gapped (non-prelim): 164 length of query: 521 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 498 effective length of database: 17,143,297,704 effective search space: 8537362256592 effective search space used: 8537362256592 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
