>LEU1_HAEIN (P43861) 2-isopropylmalate synthase (EC 2.3.3.13)|
           (Alpha-isopropylmalate synthase) (Alpha-IPM synthetase)
          Length = 515

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +1

Query: 13  ISAKQLRNQPATKFIGYK--GEKTSSDSTGGRG 105
           +SA   +  PAT F+  K  GEK S+ S GG G
Sbjct: 396 LSAHSTKEYPATAFVQLKLDGEKLSTSSIGGNG 428

>SYS_DESVH (Q72FH6) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)|
           (SerRS)
          Length = 424

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -3

Query: 302 AGSQGKEGRKMTRWFEFDHIHSL*FAFCRRSINN-SSSPGHKNLVNLRVLLSFRSIHVC 129
           AGS GK+ R + R  +F  +  + FA   RS +      GH   +   + L +R I +C
Sbjct: 264 AGSYGKDTRGLIRQHQFTKVEMVRFAHPERSFDELERMRGHAEALLQNLGLPYRVITLC 322

>SPY_EUSGR (Q8LP10) Probable UDP-N-acetylglucosamine--peptide|
           N-acetylglucosaminyltransferase SPINDLY (EC 2.4.1.-)
           (EgSPY)
          Length = 918

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +2

Query: 44  LQSSSDTKGKKPPRTAQGAEEFDY-KIYRRKHVSIENLTRHE 166
           +QSSSD+KG    ++ +G E   Y KI R ++  ++ L  +E
Sbjct: 17  VQSSSDSKGSPVKKSLEGKEAITYAKILRSRNKFVDALAIYE 58

>DPO42_BACHD (Q9K9A8) DNA polymerase IV 2 (EC 2.7.7.7) (Pol IV 2)|
          Length = 409

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = +2

Query: 107 FDYKIYRRKHVSIENLTRHEGLLNFYARARNCC*CFSCKTQTIKNGYGQTQTTGSSSFL 283
           +D K  RR HV++ NLT  E     +   R+          TIK  +G T    + SFL
Sbjct: 334 WDGKPIRRLHVNLSNLTSDEAWQLSFFGNRDRAHQLGYTMDTIKEKFGDTAIRRAVSFL 392

>PPAF_ARATH (Q38924) Iron(III)-zinc(II) purple acid phosphatase precursor (EC|
           3.1.3.2) (PAP)
          Length = 469

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 232 YKEWIWSNSNHRVIFLP 282
           Y+ WIW+  NH + F+P
Sbjct: 225 YQPWIWTAGNHEIDFVP 241

>LTRA_LACLC (P0A3U1) Group II intron-encoded protein ltrA [Includes:|
           Reverse-transcriptase (EC 2.7.7.49); RNA maturase (EC
           3.1.-.-); DNA endonuclease (EC 3.1.-.-)]
          Length = 599

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +3

Query: 24  TVEEPTGYKVHRIQRGKNLLGQHRGPRSLIIR 119
           T +E T Y++H + + KNL G+ +   ++I +
Sbjct: 548 TSDENTSYEIHHVNKVKNLKGKEKWEMAMIAK 579

>LTRA_LACLA (P0A3U0) Group II intron-encoded protein ltrA [Includes:|
           Reverse-transcriptase (EC 2.7.7.49); RNA maturase (EC
           3.1.-.-); DNA endonuclease (EC 3.1.-.-)]
          Length = 599

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +3

Query: 24  TVEEPTGYKVHRIQRGKNLLGQHRGPRSLIIR 119
           T +E T Y++H + + KNL G+ +   ++I +
Sbjct: 548 TSDENTSYEIHHVNKVKNLKGKEKWEMAMIAK 579

>PRDM6_HUMAN (Q9NQX0) PR domain zinc finger protein 6 (PR domain-containing|
           protein 6) (Fragment)
          Length = 608

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 65  KGKKPPRTAQGAEEFDYKIYRRKHVSIENLTRH 163
           +G+  PR    AEE DY +Y ++ + I  L +H
Sbjct: 172 EGRGAPRFRCSAEELDYYLYGQQRMEIIPLNQH 204


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,870,540
Number of Sequences: 219361
Number of extensions: 909174
Number of successful extensions: 2462
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2462
length of database: 80,573,946
effective HSP length: 78
effective length of database: 63,463,788
effective search space used: 1523130912
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)