>NORM_XANAC (Q8PG07) Probable multidrug resistance protein norM|
           (Multidrug-efflux transporter)
          Length = 458

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = -2

Query: 261 QALGAGRQRELIYFLYPLVGPIMLQSAAIIFWLLLQMYLFLPVV---LVLIAFAPSTVP 94
           Q LGAGR+RE        +GP+  Q+  +   L   M++FL VV   L     AP  VP
Sbjct: 84  QLLGAGRERE--------IGPLFRQALWLSLGLSALMFVFLSVVPPLLPTFGIAPDIVP 134

>GPI2_YEAST (P46961) Phosphatidylinositol N-acetylglucosaminyltransferase GPI2|
           subunit (EC 2.4.1.198)
          Length = 280

 Score = 30.8 bits (68), Expect = 0.81
 Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -1

Query: 226 LFLISPRRS-DHASKRGYNILVVVADVFISPCSTSIDSFCSL 104
           +F+IS  +S D  S    NILV +  V  S  ST+ID FC L
Sbjct: 153 IFVISSTKSKDKPSNLSTNILVALVAVLSSRLSTTIDVFCFL 194

>NADD_NEIMB (P57090) Probable nicotinate-nucleotide adenylyltransferase (EC|
           2.7.7.18) (Deamido-NAD(+) pyrophosphorylase)
           (Deamido-NAD(+) diphosphorylase) (Nicotinate
           mononucleotide adenylyltransferase) (NaMN
           adenylyltransferase)
          Length = 201

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -1

Query: 106 LYRSKDISPLVWQGDFLDQTKRTVYAWKGK*LR 8
           L R  +I+  + QGD L QT R ++AW GK L+
Sbjct: 121 LVRETNIAVAMRQGDSLHQTPRELHAWLGKSLQ 153

>NADD_NEIMA (P57089) Probable nicotinate-nucleotide adenylyltransferase (EC|
           2.7.7.18) (Deamido-NAD(+) pyrophosphorylase)
           (Deamido-NAD(+) diphosphorylase) (Nicotinate
           mononucleotide adenylyltransferase) (NaMN
           adenylyltransferase)
          Length = 197

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -1

Query: 106 LYRSKDISPLVWQGDFLDQTKRTVYAWKGK*LR 8
           L R  +I+  + QGD L QT R ++AW GK L+
Sbjct: 121 LVRETNIAVAMRQGDSLHQTPRELHAWLGKSLQ 153

>NADD_NEIG1 (Q5F556) Probable nicotinate-nucleotide adenylyltransferase (EC|
           2.7.7.18) (Deamido-NAD(+) pyrophosphorylase)
           (Deamido-NAD(+) diphosphorylase) (Nicotinate
           mononucleotide adenylyltransferase) (NaMN
           adenylyltransferase)
          Length = 201

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -1

Query: 106 LYRSKDISPLVWQGDFLDQTKRTVYAWKGK*LR 8
           L R  +I+  + QGD L QT R ++AW G  L+
Sbjct: 121 LVRETNIAVAMRQGDSLHQTPRELHAWLGNALQ 153

>Y307_MYCGE (P47549) Hypothetical lipoprotein MG307 precursor|
          Length = 1177

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 101 VEGAKAINTSTTGRNKYICNNNQ 169
           +EG   +NT+ TG  KYI + NQ
Sbjct: 282 IEGKDGLNTAKTGLEKYILDQNQ 304

>OXAA_COXBU (P45650) Inner membrane protein oxaA|
          Length = 566

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = -2

Query: 228 IYFLYPLVGPIMLQSAAIIFWL----LLQMYLFLPVVLVLIAFAPSTVPKT 88
           I F Y ++  + L+ A  IFW+    +   Y  LP+++ L   A   V  T
Sbjct: 449 IAFYYVIIESVQLRQAPFIFWIHDLSVKDPYYILPIIMGLSMLAQQWVSPT 499

>CPS2G_LACPL (Q88XJ7) Exopolysaccharide phosphotransferase cps2G (EC 2.7.-.-)|
           (Stealth protein cps2G)
          Length = 337

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 104 EGAKAINTSTTGRNKYICNNNQNIIAA 184
           E  K +N   TG++K IC N+QN+  A
Sbjct: 286 EMKKIVNDINTGKHKMICINDQNVSMA 312

>Y1485_METJA (Q58880) Putative cation transporter MJ1485|
          Length = 474

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 264 PQALGAGRQRELIYFLYPLVGPIMLQSAAIIFWLLLQM 151
           P A+G  +    IY LY ++G ++L  + + FW  L +
Sbjct: 177 PSAIGTIKTIIWIYILYTILGVLLLYLSGLSFWDALNL 214

>PTEC_BACST (Q45400) Cellobiose permease IIC component (PTS system|
           cellobiose-specific EIIC component) (EIIC-Cel)
          Length = 451

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -2

Query: 201 PIMLQSAAIIFWLLLQMYLFLPVVLVLIAFAPSTVPKTLVPWSGKVISWT 52
           PI      ++  LL+  ++ +PVVLV++++A         P SG  + WT
Sbjct: 340 PITFGMPIVMNPLLIIPFILVPVVLVVVSYAAMATGLVAKP-SGVAVPWT 388

>LON_TREPA (O83536) ATP-dependent protease La (EC 3.4.21.53)|
          Length = 881

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 19/60 (31%), Positives = 31/60 (51%)
 Frame = +2

Query: 8   PQSFPLPRINSSFRLVQEITLPDQGTNVFGTVEGAKAINTSTTGRNKYICNNNQNIIAAL 187
           P    L  + S  R+V++I LPD G NVF        I+T    R +   ++++ I+AA+
Sbjct: 145 PTISDLYEVGSVARIVKKINLPDGGLNVF--------ISTQKRFRIRKHVHHSKPIVAAV 196

>AT1A4_HUMAN (Q13733) Sodium/potassium-transporting ATPase alpha-4 chain (EC|
            3.6.3.9) (Sodium pump 4) (Na+/K+ ATPase 4)
          Length = 1029

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 87   LVPWSGKVISWTKRNELFMRGRGN 16
            +V W+  +IS T+RN LF +G  N
Sbjct: 934  VVQWADLIISKTRRNSLFQQGMRN 957


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,028,850
Number of Sequences: 219361
Number of extensions: 855865
Number of successful extensions: 2248
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2248
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 1370455656
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)