ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart36f07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_481233.1| Oryza sativa (japonica cultivar-group), mRNA 309 5e-81
2dbj|AK100085.1| Oryza sativa (japonica cultivar-group) cDNA clon... 301 1e-78
3dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 159 1e-35
4dbj|AP004556.3| Oryza sativa (japonica cultivar-group) genomic D... 159 1e-35
5dbj|AP005415.2| Oryza sativa (japonica cultivar-group) genomic D... 159 1e-35
6ref|XM_482616.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.029
7dbj|AK058761.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.029
8gb|AY107580.1| Zea mays PCO132860 mRNA sequence 46 0.11
9gb|AC133571.47| Medicago truncatula clone mth2-10h12, complete s... 44 0.45
10gb|DQ213617.1| Taeniopygia guttata clone 0058P0036D09 docking pr... 42 1.8
11gb|DQ213616.1| Taeniopygia guttata clone 0058P0027B02 docking pr... 42 1.8
12gb|AC161798.6| Mus musculus chromosome 7, clone RP23-267I20, com... 40 7.1
13gb|AC132428.3| Mus musculus BAC clone RP23-203K20 from chromosom... 40 7.1
14gb|AC110822.6| Mus musculus BAC clone RP24-226H7 from chromosome... 40 7.1
15emb|CR974468.5| Pig DNA sequence from clone PigE-178B21 on chrom... 40 7.1
16gb|AC110028.8| Mus musculus chromosome 6, clone RP23-44E17, comp... 40 7.1
17gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome 40 7.1
18gb|AC155844.2| Mus musculus 6 BAC RP24-179E20 (Roswell Park Canc... 40 7.1
19emb|CT033761.14| Mouse DNA sequence from clone RP23-203P12 on ch... 40 7.1
20gb|AC149064.3| Mus musculus BAC clone RP23-140I7 from 18, comple... 40 7.1 
>ref|XM_481233.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1187

 Score =  309 bits (156), Expect = 5e-81
 Identities = 282/324 (87%)
 Strand = Plus / Minus

                                                                       
Query: 195 ctggctcaccggaaagtagacaccttcagctgcagtccagacattgtcgggtcgcttgtc 254
           |||| ||||||| | |||||| ||||||||||||  |||||||||||| || || |||||
Sbjct: 962 ctggttcaccgggaggtagactccttcagctgcaagccagacattgtcaggacgtttgtc 903

                                                                       
Query: 255 gccaacaccgcatacctcttgctgtccacctgcaatgcgggtatacttcctgtcatggct 314
           ||||||||| |||||||||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct: 902 gccaacaccacatacctcttgctgtccaccagcaatgcgggtgtacttcctatcatggct 843

                                                                       
Query: 315 gtgcagatagccaccagtgtcaacatggcgcaaccgaatttgttggttttgacgccatgt 374
            |||||||| |||||||| ||||||||||||||||| ||||  |||||||| ||||| | 
Sbjct: 842 atgcagataaccaccagtatcaacatggcgcaaccggattttctggttttgccgccaaga 783

                                                                       
Query: 375 tttcccactgccctcaatctcgagcatccaatagtctcctgtatctgactcaccctcacc 434
            |||||||||||||||||||||||| |||| |||||||| || ||||| |||   |||||
Sbjct: 782 cttcccactgccctcaatctcgagcctccagtagtctccagtgtctgattcattttcacc 723

                                                                       
Query: 435 accaaagcaactaacctccagattccctgtaatgggagaagcatgcagatgactgtgcaa 494
            ||||||||||||||||| | ||| || |||||||||||||||||||  || ||||| | 
Sbjct: 722 gccaaagcaactaacctctaaatttcccgtaatgggagaagcatgcatgtggctgtgtag 663

                                   
Query: 495 ccactttctagtcctcatatgttg 518
           |||||||| |||||||||||||||
Sbjct: 662 ccactttcgagtcctcatatgttg 639
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>dbj|AK100085.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002O21, full
           insert sequence
          Length = 1188

 Score =  301 bits (152), Expect = 1e-78
 Identities = 281/324 (86%)
 Strand = Plus / Minus

                                                                       
Query: 195 ctggctcaccggaaagtagacaccttcagctgcagtccagacattgtcgggtcgcttgtc 254
           |||| ||||||| | |||||| ||||||||||||  |||||||||| | || || |||||
Sbjct: 962 ctggttcaccgggaggtagactccttcagctgcaagccagacattgccaggacgtttgtc 903

                                                                       
Query: 255 gccaacaccgcatacctcttgctgtccacctgcaatgcgggtatacttcctgtcatggct 314
           ||||||||| |||||||||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct: 902 gccaacaccacatacctcttgctgtccaccagcaatgcgggtgtacttcctatcatggct 843

                                                                       
Query: 315 gtgcagatagccaccagtgtcaacatggcgcaaccgaatttgttggttttgacgccatgt 374
            |||||||| |||||||| ||||||||||||||||| ||||  |||||||| ||||| | 
Sbjct: 842 atgcagataaccaccagtatcaacatggcgcaaccggattttctggttttgccgccaaga 783

                                                                       
Query: 375 tttcccactgccctcaatctcgagcatccaatagtctcctgtatctgactcaccctcacc 434
            |||||||||||||||||||||||| |||| |||||||| || ||||| |||   |||||
Sbjct: 782 cttcccactgccctcaatctcgagcctccagtagtctccagtgtctgattcattttcacc 723

                                                                       
Query: 435 accaaagcaactaacctccagattccctgtaatgggagaagcatgcagatgactgtgcaa 494
            ||||||||||||||||| | ||| || |||||||||||||||||||  || ||||| | 
Sbjct: 722 gccaaagcaactaacctctaaatttcccgtaatgggagaagcatgcatgtggctgtgtag 663

                                   
Query: 495 ccactttctagtcctcatatgttg 518
           |||||||| |||||||||||||||
Sbjct: 662 ccactttcgagtcctcatatgttg 639
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  159 bits (80), Expect = 1e-35
 Identities = 119/132 (90%)
 Strand = Plus / Plus

                                                                            
Query: 268      acctcttgctgtccacctgcaatgcgggtatacttcctgtcatggctgtgcagatagcca 327
                ||||||||||||||||| ||||||||||| |||||||| |||||||| |||||||| |||
Sbjct: 10804462 acctcttgctgtccaccagcaatgcgggtgtacttcctatcatggctatgcagataacca 10804521

                                                                            
Query: 328      ccagtgtcaacatggcgcaaccgaatttgttggttttgacgccatgttttcccactgccc 387
                ||||| ||||||||||||||||| ||||  |||||||| ||||| |  ||||||||||||
Sbjct: 10804522 ccagtatcaacatggcgcaaccggattttctggttttgccgccaagacttcccactgccc 10804581

                            
Query: 388      tcaatctcgagc 399
                ||||||||||||
Sbjct: 10804582 tcaatctcgagc 10804593



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 67/77 (87%)
 Strand = Plus / Plus

                                                                            
Query: 195      ctggctcaccggaaagtagacaccttcagctgcagtccagacattgtcgggtcgcttgtc 254
                |||| ||||||| | |||||| ||||||||||||  |||||||||||| || || |||||
Sbjct: 10804278 ctggttcaccgggaggtagactccttcagctgcaagccagacattgtcaggacgtttgtc 10804337

                                 
Query: 255      gccaacaccgcatacct 271
                ||||||||| |||||||
Sbjct: 10804338 gccaacaccacatacct 10804354



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                        
Query: 463      gtaatgggagaagcatgcagatgactgtgcaaccactttctagtcctcatatgttg 518
                |||||||||||||||||||  || ||||| | |||||||| |||||||||||||||
Sbjct: 10805089 gtaatgggagaagcatgcatgtggctgtgtagccactttcgagtcctcatatgttg 10805144
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>dbj|AP004556.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0026A08
          Length = 171272

 Score =  159 bits (80), Expect = 1e-35
 Identities = 119/132 (90%)
 Strand = Plus / Plus

                                                                         
Query: 268   acctcttgctgtccacctgcaatgcgggtatacttcctgtcatggctgtgcagatagcca 327
             ||||||||||||||||| ||||||||||| |||||||| |||||||| |||||||| |||
Sbjct: 18247 acctcttgctgtccaccagcaatgcgggtgtacttcctatcatggctatgcagataacca 18306

                                                                         
Query: 328   ccagtgtcaacatggcgcaaccgaatttgttggttttgacgccatgttttcccactgccc 387
             ||||| ||||||||||||||||| ||||  |||||||| ||||| |  ||||||||||||
Sbjct: 18307 ccagtatcaacatggcgcaaccggattttctggttttgccgccaagacttcccactgccc 18366

                         
Query: 388   tcaatctcgagc 399
             ||||||||||||
Sbjct: 18367 tcaatctcgagc 18378



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 67/77 (87%)
 Strand = Plus / Plus

                                                                         
Query: 195   ctggctcaccggaaagtagacaccttcagctgcagtccagacattgtcgggtcgcttgtc 254
             |||| ||||||| | |||||| ||||||||||||  |||||||||||| || || |||||
Sbjct: 18063 ctggttcaccgggaggtagactccttcagctgcaagccagacattgtcaggacgtttgtc 18122

                              
Query: 255   gccaacaccgcatacct 271
             ||||||||| |||||||
Sbjct: 18123 gccaacaccacatacct 18139



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                     
Query: 463   gtaatgggagaagcatgcagatgactgtgcaaccactttctagtcctcatatgttg 518
             |||||||||||||||||||  || ||||| | |||||||| |||||||||||||||
Sbjct: 18874 gtaatgggagaagcatgcatgtggctgtgtagccactttcgagtcctcatatgttg 18929
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>dbj|AP005415.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0091M20
          Length = 132976

 Score =  159 bits (80), Expect = 1e-35
 Identities = 119/132 (90%)
 Strand = Plus / Plus

                                                                          
Query: 268    acctcttgctgtccacctgcaatgcgggtatacttcctgtcatggctgtgcagatagcca 327
              ||||||||||||||||| ||||||||||| |||||||| |||||||| |||||||| |||
Sbjct: 101594 acctcttgctgtccaccagcaatgcgggtgtacttcctatcatggctatgcagataacca 101653

                                                                          
Query: 328    ccagtgtcaacatggcgcaaccgaatttgttggttttgacgccatgttttcccactgccc 387
              ||||| ||||||||||||||||| ||||  |||||||| ||||| |  ||||||||||||
Sbjct: 101654 ccagtatcaacatggcgcaaccggattttctggttttgccgccaagacttcccactgccc 101713

                          
Query: 388    tcaatctcgagc 399
              ||||||||||||
Sbjct: 101714 tcaatctcgagc 101725



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 67/77 (87%)
 Strand = Plus / Plus

                                                                          
Query: 195    ctggctcaccggaaagtagacaccttcagctgcagtccagacattgtcgggtcgcttgtc 254
              |||| ||||||| | |||||| ||||||||||||  |||||||||||| || || |||||
Sbjct: 101410 ctggttcaccgggaggtagactccttcagctgcaagccagacattgtcaggacgtttgtc 101469

                               
Query: 255    gccaacaccgcatacct 271
              ||||||||| |||||||
Sbjct: 101470 gccaacaccacatacct 101486



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                      
Query: 463    gtaatgggagaagcatgcagatgactgtgcaaccactttctagtcctcatatgttg 518
              |||||||||||||||||||  || ||||| | |||||||| |||||||||||||||
Sbjct: 102221 gtaatgggagaagcatgcatgtggctgtgtagccactttcgagtcctcatatgttg 102276
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>ref|XM_482616.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1210

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                       
Query: 385 ccctcaatctcgagcatccaatagtctcctgtatctgactcaccctcaccaccaaagcaa 444
           ||||||||||| ||| ||||||| ||||| |||||||| |  || || |||||||| || 
Sbjct: 698 ccctcaatctccagcctccaataatctccagtatctgattgtccatccccaccaaaacag 639

                   
Query: 445 ctaacctc 452
           ||||||||
Sbjct: 638 ctaacctc 631
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>dbj|AK058761.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-001-B11, full
           insert sequence
          Length = 1210

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                       
Query: 385 ccctcaatctcgagcatccaatagtctcctgtatctgactcaccctcaccaccaaagcaa 444
           ||||||||||| ||| ||||||| ||||| |||||||| |  || || |||||||| || 
Sbjct: 698 ccctcaatctccagcctccaataatctccagtatctgattgtccatccccaccaaaacag 639

                   
Query: 445 ctaacctc 452
           ||||||||
Sbjct: 638 ctaacctc 631
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>gb|AY107580.1| Zea mays PCO132860 mRNA sequence
          Length = 1095

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 68/83 (81%)
 Strand = Plus / Minus

                                                                       
Query: 259 acaccgcatacctcttgctgtccacctgcaatgcgggtatacttcctgtcatggctgtgc 318
           |||||||| ||||||||||| |||||  ||| |||| | |||||| ||   || || |||
Sbjct: 747 acaccgcagacctcttgctgcccaccaccaaggcggttgtacttcttgctgtgactatgc 688

                                  
Query: 319 agatagccaccagtgtcaacatg 341
           ||||| || ||||||||||||||
Sbjct: 687 agataacctccagtgtcaacatg 665
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>gb|AC133571.47| Medicago truncatula clone mth2-10h12, complete sequence
          Length = 85905

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 205   ggaaagtagacaccttcagctgcagtccagacattgtc 242
             |||| ||||||||||||||||||   ||||||||||||
Sbjct: 71372 ggaaggtagacaccttcagctgccagccagacattgtc 71335
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>gb|DQ213617.1| Taeniopygia guttata clone 0058P0036D09 docking protein 5
           (downstream of tyrosine kinase 5)-like mRNA, complete
           sequence
          Length = 1213

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 146 ttatttcagtgatgacacctc 166
           |||||||||||||||||||||
Sbjct: 42  ttatttcagtgatgacacctc 62
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>gb|DQ213616.1| Taeniopygia guttata clone 0058P0027B02 docking protein 5
           (downstream of tyrosine kinase 5)-like mRNA, complete
           sequence
          Length = 1213

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 146 ttatttcagtgatgacacctc 166
           |||||||||||||||||||||
Sbjct: 42  ttatttcagtgatgacacctc 62
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>gb|AC161798.6| Mus musculus chromosome 7, clone RP23-267I20, complete sequence
          Length = 182519

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 37   catatacaacaagcttacataacactaa 64
            |||| |||| ||||||||||||||||||
Sbjct: 6595 catacacaagaagcttacataacactaa 6622
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>gb|AC132428.3| Mus musculus BAC clone RP23-203K20 from chromosome 7, complete sequence
          Length = 194926

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 37    catatacaacaagcttacataacactaa 64
             |||| |||| ||||||||||||||||||
Sbjct: 98194 catacacaagaagcttacataacactaa 98167
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>gb|AC110822.6| Mus musculus BAC clone RP24-226H7 from chromosome 9, complete sequence
          Length = 144131

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 468   gggagaagcatgcagatgactgtg 491
             |||||||||| |||||||||||||
Sbjct: 87502 gggagaagcaggcagatgactgtg 87479
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>emb|CR974468.5| Pig DNA sequence from clone PigE-178B21 on chromosome 7, complete
             sequence
          Length = 120695

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 301   ttcctgtcatggctgtgcag 320
             ||||||||||||||||||||
Sbjct: 54144 ttcctgtcatggctgtgcag 54125
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>gb|AC110028.8| Mus musculus chromosome 6, clone RP23-44E17, complete sequence
          Length = 243770

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 130    aatcatacacaaattgttatttca 153
              ||||||||| ||||||||||||||
Sbjct: 212290 aatcatacaaaaattgttatttca 212313
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>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome
          Length = 5373180

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 430     tcaccaccaaagcaactaac 449
               ||||||||||||||||||||
Sbjct: 2892235 tcaccaccaaagcaactaac 2892216
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>gb|AC155844.2| Mus musculus 6 BAC RP24-179E20 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 167751

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 38     atatacaacaagcttacataacac 61
              |||||||||||||||||| |||||
Sbjct: 142095 atatacaacaagcttacagaacac 142118
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>emb|CT033761.14| Mouse DNA sequence from clone RP23-203P12 on chromosome 9, complete
              sequence
          Length = 208050

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 468    gggagaagcatgcagatgactgtg 491
              |||||||||| |||||||||||||
Sbjct: 141414 gggagaagcaggcagatgactgtg 141391
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>gb|AC149064.3| Mus musculus BAC clone RP23-140I7 from 18, complete sequence
          Length = 183953

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 94    ccaaacatttctaatgattacaag 117
             ||||||||||||||||||| ||||
Sbjct: 63854 ccaaacatttctaatgattgcaag 63831


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,170,854
Number of Sequences: 3902068
Number of extensions: 4170854
Number of successful extensions: 74016
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 73940
Number of HSP's gapped (non-prelim): 77
length of query: 522
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 499
effective length of database: 17,143,297,704
effective search space: 8554505554296
effective search space used: 8554505554296
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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