ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart36f04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC019163.8| Homo sapiens BAC clone RP11-87F15 from 4, complet... 42 0.079
2gb|AC011308.8| Homo sapiens BAC clone RP11-522N18 from 2, comple... 42 0.079
3emb|CT025636.2| Pan troglodytes chromosome X clone RP43-029M22 m... 40 0.31
4emb|AL772370.7| Human DNA sequence from clone RP11-184B10 on chr... 40 0.31
5gb|AC144523.2| Homo sapiens BAC clone RP11-1302F12 from UL, comp... 40 0.31
6gb|AC021488.5| Homo sapiens chromosome 11, clone RP11-77F24, com... 40 0.31
7dbj|AP005597.2| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 0.31
8gb|AC141481.4| Mus musculus BAC clone RP23-145E16 from chromosom... 38 1.2
9gb|AC129212.4| Mus musculus BAC clone RP24-373G21 from chromosom... 38 1.2
10gb|AC133207.3| Mus musculus BAC clone RP23-116L23 from chromosom... 38 1.2
11gb|AC019063.4| Homo sapiens BAC clone RP11-144H20 from 7, comple... 38 1.2
12emb|AL133551.13| Human DNA sequence from clone RP11-57G10 on chr... 38 1.2
13emb|AL133548.6| Human DNA sequence from clone RP11-235O14 on chr... 38 1.2
14gb|AC110072.3| Homo sapiens BAC clone RP11-18C16 from 4, complet... 38 1.2
15gb|AC022495.17| Homo sapiens 3 BAC RP11-94I16 (Roswell Park Canc... 38 1.2
16gb|AC087891.12| Mus musculus Strain C57BL6/J Chromosome 10 RP23-... 38 1.2
17gb|AC091074.3|AC091074 Homo sapiens chromosome 15 clone RP11-640... 38 1.2
18gb|AC007222.5| Homo sapiens chromosome 16 clone RP11-441K8, comp... 38 1.2
19gb|AC069387.8| Homo sapiens BAC clone RP11-295G11 from 2, comple... 38 1.2
20gb|AC126282.3| Homo sapiens BAC clone RP13-550B17 from 7, comple... 38 1.2
21gb|AC138789.1| Homo sapiens BAC clone CTD-2593N8 from 7, complet... 38 1.2
22gb|U00089.2| Mycoplasma pneumoniae M129, complete genome 38 1.2
23gb|AC102166.13| Mus musculus chromosome 1, clone RP23-447B15, co... 36 4.9
24gb|AC166991.5| Mus musculus BAC clone RP24-91J15 from chromosome... 36 4.9
25gb|AC154392.18| Mus musculus chromosome 1, clone RP23-413K6, com... 36 4.9
26gb|AC136448.2| Oryza sativa (japonica cultivar-group) chromosome... 36 4.9
27gb|AC122630.5| Rattus norvegicus 4 BAC CH230-131B2 (Children's H... 36 4.9
28gb|AY441710.1| Nycticebus bengalensis SINE element LoF3 36 4.9
29gb|AC115714.14| Mus musculus chromosome 12, clone RP23-477C24, c... 36 4.9
30gb|AC115860.9| Mus musculus chromosome 1, clone RP24-290C11, com... 36 4.9
31gb|AE017199.1| Nanoarchaeum equitans Kin4-M, complete genome 36 4.9
32gb|AC125058.4| Mus musculus BAC clone RP23-400N6 from chromosome... 36 4.9
33emb|CT009526.6| Pig DNA sequence from clone CH242-219E11 on chro... 36 4.9
34gb|AC092013.3| Homo sapiens BAC clone RP11-695L4 from 7, complet... 36 4.9
35gb|AC164426.5| Mus musculus BAC clone RP24-320I19 from chromosom... 36 4.9
36emb|AL592546.7| Human DNA sequence from clone RP11-211N11 on chr... 36 4.9
37emb|AL356798.18| Human DNA sequence from clone RP11-467B11 on ch... 36 4.9
38emb|AL161622.12| Human DNA sequence from clone RP3-402H5 on chro... 36 4.9
39gb|AC117402.9| Homo sapiens 3 BAC RP11-553A10 (Roswell Park Canc... 36 4.9
40emb|AL034558.3|PFMAL3P2 Plasmodium falciparum MAL3P2, complete s... 36 4.9
41emb|CR936323.2| Medicago truncatula chromosome 5 clone mth2-155c... 36 4.9
42gb|AC080013.17| Homo sapiens 3 BAC RP11-379F4 (Roswell Park Canc... 36 4.9
43gb|AC004554.1| Homo sapiens X BAC GSHB-590J6 (Genome Systems Hum... 36 4.9
44gb|AC021316.16| Homo sapiens chromosome 15, clone RP11-11J16, co... 36 4.9
45gb|AC011355.6| Homo sapiens chromosome 5 clone CTC-354H18, compl... 36 4.9
46gb|AC092825.5| Homo sapiens 3 BAC RP11-171G7 (Roswell Park Cance... 36 4.9
47gb|AC090383.4| Homo sapiens chromosome 18, clone RP11-727C1, com... 36 4.9
48gb|AC023192.8| Homo sapiens chromosome 18, clone RP11-562H1, com... 36 4.9
49gb|AC079363.19| Homo sapiens 12q BAC RP11-617J18 (Roswell Park C... 36 4.9
50gb|AC021180.6| Homo sapiens BAC clone RP11-727M10 from 4, comple... 36 4.9
51gb|AC160636.2| Mus musculus BAC clone RP23-364M15 from chromosom... 36 4.9
52gb|AC116801.9| Mus musculus chromosome 8, clone RP24-337F7, comp... 36 4.9
53gb|AC018994.7|AC018994 Homo sapiens chromosome 18, clone RP11-61... 36 4.9
54emb|BX323035.8| Zebrafish DNA sequence from clone DKEYP-94H10 in... 36 4.9
55gb|AC104759.10| Homo sapiens chromosome 15, clone RP11-126F18, c... 36 4.9
56dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 36 4.9
57gb|AC007719.7|AC007719 Homo sapiens chromosome , clone RP11-3A12... 36 4.9
58gb|AC022882.5|AC022882 Homo sapiens chromosome 11, clone RP11-44... 36 4.9
59emb|BX465184.7| Zebrafish DNA sequence from clone DKEY-20N10 in ... 36 4.9
60emb|CR942552.2| Xenopus tropicalis finished cDNA, clone TEgg107p05 36 4.9
61gb|AC109143.19| Mus musculus chromosome 1, clone RP23-105D15, co... 36 4.9
62gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 36 4.9
63gb|AC140195.3| Mus musculus BAC clone RP24-64A19 from 6, complet... 36 4.9
64gb|AC158950.3| Mus musculus chromosome 1, clone RP24-215K13, com... 36 4.9
65emb|AL824715.15| Mouse DNA sequence from clone RP23-98P15 on chr... 36 4.9
66emb|AL732443.6| Mouse DNA sequence from clone RP23-90H6 on chrom... 36 4.9 
>gb|AC019163.8| Homo sapiens BAC clone RP11-87F15 from 4, complete sequence
          Length = 217921

 Score = 42.1 bits (21), Expect = 0.079
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 12     aaaaataactgccttttcttt 32
              |||||||||||||||||||||
Sbjct: 161561 aaaaataactgccttttcttt 161581
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>gb|AC011308.8| Homo sapiens BAC clone RP11-522N18 from 2, complete sequence
          Length = 124740

 Score = 42.1 bits (21), Expect = 0.079
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 5      aggaattaaaaataactgcct 25
              |||||||||||||||||||||
Sbjct: 118315 aggaattaaaaataactgcct 118295
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>emb|CT025636.2| Pan troglodytes chromosome X clone RP43-029M22 map Xq28, complete
             sequence
          Length = 176404

 Score = 40.1 bits (20), Expect = 0.31
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 7     gaattaaaaataactgccttttct 30
             ||||||| ||||||||||||||||
Sbjct: 35740 gaattaataataactgccttttct 35717
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>emb|AL772370.7| Human DNA sequence from clone RP11-184B10 on chromosome X Contains the
             5' end of the SMPX gene for X-linked small muscle protein,
             complete sequence
          Length = 104749

 Score = 40.1 bits (20), Expect = 0.31
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 7     gaattaaaaataactgccttttct 30
             ||||||| ||||||||||||||||
Sbjct: 94503 gaattaataataactgccttttct 94480
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>gb|AC144523.2| Homo sapiens BAC clone RP11-1302F12 from UL, complete sequence
          Length = 190427

 Score = 40.1 bits (20), Expect = 0.31
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 23     ccttttctttgatagagcac 42
              ||||||||||||||||||||
Sbjct: 116469 ccttttctttgatagagcac 116450
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>gb|AC021488.5| Homo sapiens chromosome 11, clone RP11-77F24, complete sequence
          Length = 138522

 Score = 40.1 bits (20), Expect = 0.31
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 23    ccttttctttgatagagcac 42
             ||||||||||||||||||||
Sbjct: 43022 ccttttctttgatagagcac 43003
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>dbj|AP005597.2| Homo sapiens genomic DNA, chromosome 11 clone:RP11-72M10, complete
             sequence
          Length = 163324

 Score = 40.1 bits (20), Expect = 0.31
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 23    ccttttctttgatagagcac 42
             ||||||||||||||||||||
Sbjct: 18709 ccttttctttgatagagcac 18690
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>gb|AC141481.4| Mus musculus BAC clone RP23-145E16 from chromosome 15, complete
             sequence
          Length = 195197

 Score = 38.2 bits (19), Expect = 1.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 3     ataggaattaaaaataact 21
             |||||||||||||||||||
Sbjct: 25274 ataggaattaaaaataact 25292
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>gb|AC129212.4| Mus musculus BAC clone RP24-373G21 from chromosome 15, complete sequence
          Length = 174846

 Score = 38.2 bits (19), Expect = 1.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 3      ataggaattaaaaataact 21
              |||||||||||||||||||
Sbjct: 141870 ataggaattaaaaataact 141888
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>gb|AC133207.3| Mus musculus BAC clone RP23-116L23 from chromosome 10, complete sequence
          Length = 222101

 Score = 38.2 bits (19), Expect = 1.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 10     ttaaaaataactgcctttt 28
              |||||||||||||||||||
Sbjct: 214064 ttaaaaataactgcctttt 214046
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>gb|AC019063.4| Homo sapiens BAC clone RP11-144H20 from 7, complete sequence
          Length = 187282

 Score = 38.2 bits (19), Expect = 1.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 23     ccttttctttgatagagca 41
              |||||||||||||||||||
Sbjct: 141030 ccttttctttgatagagca 141048
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>emb|AL133551.13| Human DNA sequence from clone RP11-57G10 on chromosome 10 Contains a
             ribosomal protein L21 (RPL21) pseudogene, the gene for
             J-domain containing protein 1 (JDP1), a ribosomal protein
             L12 (RPL12) pseudogene, a novel pseudogene, the SIRT1 gene
             for sirtuin (silent mating type information regulation 2
             homolog) 1 (S. cerevisiae), the 3' end of the gene for a
             novel protein (KIAA0032) and two CpG island, complete
             sequence
          Length = 175940

 Score = 38.2 bits (19), Expect = 1.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 1     ggataggaattaaaaataa 19
             |||||||||||||||||||
Sbjct: 74939 ggataggaattaaaaataa 74921
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>emb|AL133548.6| Human DNA sequence from clone RP11-235O14 on chromosome 9q13-21.2
             Contains a novel gene (FLJ20559), the OSTF1 gene for
             osteoclast stimulating factor 1 (OSF, SH3P2) and a CpG
             island, complete sequence
          Length = 153392

 Score = 38.2 bits (19), Expect = 1.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 20    ctgccttttctttgataga 38
             |||||||||||||||||||
Sbjct: 88815 ctgccttttctttgataga 88833
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>gb|AC110072.3| Homo sapiens BAC clone RP11-18C16 from 4, complete sequence
          Length = 188672

 Score = 38.2 bits (19), Expect = 1.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 23     ccttttctttgatagagca 41
              |||||||||||||||||||
Sbjct: 177131 ccttttctttgatagagca 177149
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>gb|AC022495.17| Homo sapiens 3 BAC RP11-94I16 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 156054

 Score = 38.2 bits (19), Expect = 1.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 12    aaaaataactgccttttct 30
             |||||||||||||||||||
Sbjct: 99730 aaaaataactgccttttct 99712
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>gb|AC087891.12| Mus musculus Strain C57BL6/J Chromosome 10 RP23-440N1, complete sequence
          Length = 195052

 Score = 38.2 bits (19), Expect = 1.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 10     ttaaaaataactgcctttt 28
              |||||||||||||||||||
Sbjct: 110180 ttaaaaataactgcctttt 110198
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>gb|AC091074.3|AC091074 Homo sapiens chromosome 15 clone RP11-640I2 map 15q21.1, complete
              sequence
          Length = 161083

 Score = 38.2 bits (19), Expect = 1.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 23     ccttttctttgatagagca 41
              |||||||||||||||||||
Sbjct: 125744 ccttttctttgatagagca 125762
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>gb|AC007222.5| Homo sapiens chromosome 16 clone RP11-441K8, complete sequence
          Length = 187191

 Score = 38.2 bits (19), Expect = 1.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 1      ggataggaattaaaaataactgc 23
              ||||||| |||||||||||||||
Sbjct: 155070 ggataggcattaaaaataactgc 155092
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>gb|AC069387.8| Homo sapiens BAC clone RP11-295G11 from 2, complete sequence
          Length = 47340

 Score = 38.2 bits (19), Expect = 1.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 14   aaataactgccttttcttt 32
            |||||||||||||||||||
Sbjct: 5184 aaataactgccttttcttt 5166
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>gb|AC126282.3| Homo sapiens BAC clone RP13-550B17 from 7, complete sequence
          Length = 56103

 Score = 38.2 bits (19), Expect = 1.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 23    ccttttctttgatagagca 41
             |||||||||||||||||||
Sbjct: 34258 ccttttctttgatagagca 34240
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>gb|AC138789.1| Homo sapiens BAC clone CTD-2593N8 from 7, complete sequence
          Length = 155989

 Score = 38.2 bits (19), Expect = 1.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 23     ccttttctttgatagagca 41
              |||||||||||||||||||
Sbjct: 102829 ccttttctttgatagagca 102811



 Score = 36.2 bits (18), Expect = 4.9
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 24     cttttctttgatagagca 41
              ||||||||||||||||||
Sbjct: 100607 cttttctttgatagagca 100590
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>gb|U00089.2| Mycoplasma pneumoniae M129, complete genome
          Length = 816394

 Score = 38.2 bits (19), Expect = 1.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 18    aactgccttttctttgata 36
             |||||||||||||||||||
Sbjct: 11144 aactgccttttctttgata 11162
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>gb|AC102166.13| Mus musculus chromosome 1, clone RP23-447B15, complete sequence
          Length = 182043

 Score = 36.2 bits (18), Expect = 4.9
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 17    taactgccttttctttga 34
             ||||||||||||||||||
Sbjct: 15681 taactgccttttctttga 15664
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>gb|AC166991.5| Mus musculus BAC clone RP24-91J15 from chromosome 12, complete
            sequence
          Length = 199262

 Score = 36.2 bits (18), Expect = 4.9
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 10   ttaaaaataactgccttt 27
            ||||||||||||||||||
Sbjct: 4086 ttaaaaataactgccttt 4069
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>gb|AC154392.18| Mus musculus chromosome 1, clone RP23-413K6, complete sequence
          Length = 205076

 Score = 36.2 bits (18), Expect = 4.9
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 9      attaaaaataactgccttttct 30
              |||||||| |||||||||||||
Sbjct: 138608 attaaaaacaactgccttttct 138587
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>gb|AC136448.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0077O14, complete sequence
          Length = 124915

 Score = 36.2 bits (18), Expect = 4.9
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 2     gataggaattaaaaataactgc 23
             |||||||||||| |||||||||
Sbjct: 76655 gataggaattaagaataactgc 76676
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>gb|AC122630.5| Rattus norvegicus 4 BAC CH230-131B2 (Children's Hospital Oakland
             Research Institute Rat (BN/SsNHsd/MCW) BAC library)
             complete sequence
          Length = 211343

 Score = 36.2 bits (18), Expect = 4.9
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 5     aggaattaaaaataactg 22
             ||||||||||||||||||
Sbjct: 29790 aggaattaaaaataactg 29773
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>gb|AY441710.1| Nycticebus bengalensis SINE element LoF3
          Length = 502

 Score = 36.2 bits (18), Expect = 4.9
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 2   gataggaattaaaaataa 19
           ||||||||||||||||||
Sbjct: 475 gataggaattaaaaataa 458
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>gb|AC115714.14| Mus musculus chromosome 12, clone RP23-477C24, complete sequence
          Length = 164272

 Score = 36.2 bits (18), Expect = 4.9
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 10    ttaaaaataactgccttt 27
             ||||||||||||||||||
Sbjct: 41488 ttaaaaataactgccttt 41505
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>gb|AC115860.9| Mus musculus chromosome 1, clone RP24-290C11, complete sequence
          Length = 240785

 Score = 36.2 bits (18), Expect = 4.9
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 2      gataggaattaaaaataa 19
              ||||||||||||||||||
Sbjct: 191654 gataggaattaaaaataa 191671
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>gb|AE017199.1| Nanoarchaeum equitans Kin4-M, complete genome
          Length = 490885

 Score = 36.2 bits (18), Expect = 4.9
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 1     ggataggaattaaaaataactg 22
             ||||| ||||||||||||||||
Sbjct: 98276 ggatatgaattaaaaataactg 98255
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>gb|AC125058.4| Mus musculus BAC clone RP23-400N6 from chromosome 14, complete sequence
          Length = 195696

 Score = 36.2 bits (18), Expect = 4.9
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 9      attaaaaataactgcctt 26
              ||||||||||||||||||
Sbjct: 104454 attaaaaataactgcctt 104471
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>emb|CT009526.6| Pig DNA sequence from clone CH242-219E11 on chromosome 17, complete
             sequence
          Length = 100904

 Score = 36.2 bits (18), Expect = 4.9
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 9     attaaaaataactgcctt 26
             ||||||||||||||||||
Sbjct: 92717 attaaaaataactgcctt 92734
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>gb|AC092013.3| Homo sapiens BAC clone RP11-695L4 from 7, complete sequence
          Length = 129756

 Score = 36.2 bits (18), Expect = 4.9
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 10     ttaaaaataactgccttt 27
              ||||||||||||||||||
Sbjct: 107675 ttaaaaataactgccttt 107692
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>gb|AC164426.5| Mus musculus BAC clone RP24-320I19 from chromosome 13, complete
             sequence
          Length = 160268

 Score = 36.2 bits (18), Expect = 4.9
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 14    aaataactgccttttctt 31
             ||||||||||||||||||
Sbjct: 85759 aaataactgccttttctt 85742
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>emb|AL592546.7| Human DNA sequence from clone RP11-211N11 on chromosome 10 Contains the
              3' end of the CASP7 gene for caspase 7 apoptosis-related
              cysteine protease, a novel gene (FLJ23537), the DCLRE1A
              gene for DNA cross-link repair 1A (PSO2 homolog S.
              cerevisiae), the 5' end of the gene for a novel NHL repeat
              domain containing protein (FLJ33312), a novel gene and a
              CpG island, complete sequence
          Length = 174776

 Score = 36.2 bits (18), Expect = 4.9
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 4      taggaattaaaaataact 21
              ||||||||||||||||||
Sbjct: 150243 taggaattaaaaataact 150226
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>emb|AL356798.18| Human DNA sequence from clone RP11-467B11 on chromosome 9 Contains part
             of the INVS gene for inversin, complete sequence
          Length = 118068

 Score = 36.2 bits (18), Expect = 4.9
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 21    tgccttttctttgataga 38
             ||||||||||||||||||
Sbjct: 95712 tgccttttctttgataga 95729
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>emb|AL161622.12| Human DNA sequence from clone RP3-402H5 on chromosome 6p12.3-21.1
             Contains the 3' end of a gene for a  novel protein similar
             to seven transmembrane receptor (Rhodopsin family),
             complete sequence
          Length = 131967

 Score = 36.2 bits (18), Expect = 4.9
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 8     aattaaaaataactgcct 25
             ||||||||||||||||||
Sbjct: 47569 aattaaaaataactgcct 47552
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>gb|AC117402.9| Homo sapiens 3 BAC RP11-553A10 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 166999

 Score = 36.2 bits (18), Expect = 4.9
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 4     taggaattaaaaataact 21
             ||||||||||||||||||
Sbjct: 64036 taggaattaaaaataact 64019
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>emb|AL034558.3|PFMAL3P2 Plasmodium falciparum MAL3P2, complete sequence
          Length = 158548

 Score = 36.2 bits (18), Expect = 4.9
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 5     aggaattaaaaataactg 22
             ||||||||||||||||||
Sbjct: 77214 aggaattaaaaataactg 77197
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>emb|CR936323.2| Medicago truncatula chromosome 5 clone mth2-155c8, COMPLETE SEQUENCE
          Length = 136527

 Score = 36.2 bits (18), Expect = 4.9
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 10    ttaaaaataactgccttt 27
             ||||||||||||||||||
Sbjct: 19059 ttaaaaataactgccttt 19076
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>gb|AC080013.17| Homo sapiens 3 BAC RP11-379F4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 163074

 Score = 36.2 bits (18), Expect = 4.9
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 8     aattaaaaataactgcct 25
             ||||||||||||||||||
Sbjct: 23423 aattaaaaataactgcct 23440
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>gb|AC004554.1| Homo sapiens X BAC GSHB-590J6 (Genome Systems Human BAC library) complete
              sequence
          Length = 195142

 Score = 36.2 bits (18), Expect = 4.9
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 21     tgccttttctttgataga 38
              ||||||||||||||||||
Sbjct: 138158 tgccttttctttgataga 138141
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>gb|AC021316.16| Homo sapiens chromosome 15, clone RP11-11J16, complete sequence
          Length = 173535

 Score = 36.2 bits (18), Expect = 4.9
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 5      aggaattaaaaataactg 22
              ||||||||||||||||||
Sbjct: 121098 aggaattaaaaataactg 121081
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>gb|AC011355.6| Homo sapiens chromosome 5 clone CTC-354H18, complete sequence
          Length = 114276

 Score = 36.2 bits (18), Expect = 4.9
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 5     aggaattaaaaataactg 22
             ||||||||||||||||||
Sbjct: 79289 aggaattaaaaataactg 79306
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>gb|AC092825.5| Homo sapiens 3 BAC RP11-171G7 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 157842

 Score = 36.2 bits (18), Expect = 4.9
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 5     aggaattaaaaataactg 22
             ||||||||||||||||||
Sbjct: 42843 aggaattaaaaataactg 42860
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>gb|AC090383.4| Homo sapiens chromosome 18, clone RP11-727C1, complete sequence
          Length = 93011

 Score = 36.2 bits (18), Expect = 4.9
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 6     ggaattaaaaataactgc 23
             ||||||||||||||||||
Sbjct: 78885 ggaattaaaaataactgc 78868
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>gb|AC023192.8| Homo sapiens chromosome 18, clone RP11-562H1, complete sequence
          Length = 167944

 Score = 36.2 bits (18), Expect = 4.9
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 13    aaaataactgccttttct 30
             ||||||||||||||||||
Sbjct: 45128 aaaataactgccttttct 45111
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>gb|AC079363.19| Homo sapiens 12q BAC RP11-617J18 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 193741

 Score = 36.2 bits (18), Expect = 4.9
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 8      aattaaaaataactgccttttc 29
              |||||||||||||||| |||||
Sbjct: 189929 aattaaaaataactgctttttc 189908
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>gb|AC021180.6| Homo sapiens BAC clone RP11-727M10 from 4, complete sequence
          Length = 173940

 Score = 36.2 bits (18), Expect = 4.9
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 5     aggaattaaaaataactg 22
             ||||||||||||||||||
Sbjct: 17720 aggaattaaaaataactg 17737
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>gb|AC160636.2| Mus musculus BAC clone RP23-364M15 from chromosome 9, complete sequence
          Length = 139726

 Score = 36.2 bits (18), Expect = 4.9
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 10     ttaaaaataactgccttttctt 31
              ||||||||||||||| ||||||
Sbjct: 104352 ttaaaaataactgccatttctt 104331
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>gb|AC116801.9| Mus musculus chromosome 8, clone RP24-337F7, complete sequence
          Length = 168297

 Score = 36.2 bits (18), Expect = 4.9
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 7     gaattaaaaataactgcctttt 28
             |||||| |||||||||||||||
Sbjct: 84737 gaattataaataactgcctttt 84716
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>gb|AC018994.7|AC018994 Homo sapiens chromosome 18, clone RP11-619L19, complete sequence
          Length = 166451

 Score = 36.2 bits (18), Expect = 4.9
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 6      ggaattaaaaataactgc 23
              ||||||||||||||||||
Sbjct: 156061 ggaattaaaaataactgc 156078
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>emb|BX323035.8| Zebrafish DNA sequence from clone DKEYP-94H10 in linkage group 2,
              complete sequence
          Length = 147640

 Score = 36.2 bits (18), Expect = 4.9
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 11     taaaaataactgcctttt 28
              ||||||||||||||||||
Sbjct: 133222 taaaaataactgcctttt 133205
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>gb|AC104759.10| Homo sapiens chromosome 15, clone RP11-126F18, complete sequence
          Length = 173986

 Score = 36.2 bits (18), Expect = 4.9
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 5     aggaattaaaaataactg 22
             ||||||||||||||||||
Sbjct: 32649 aggaattaaaaataactg 32632
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 36.2 bits (18), Expect = 4.9
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                      
Query: 2        gataggaattaaaaataactgc 23
                |||||||||||| |||||||||
Sbjct: 10639177 gataggaattaagaataactgc 10639156
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>gb|AC007719.7|AC007719 Homo sapiens chromosome , clone RP11-3A12, complete sequence
          Length = 150831

 Score = 36.2 bits (18), Expect = 4.9
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 3     ataggaattaaaaataac 20
             ||||||||||||||||||
Sbjct: 17479 ataggaattaaaaataac 17462
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>gb|AC022882.5|AC022882 Homo sapiens chromosome 11, clone RP11-444K7, complete sequence
          Length = 174469

 Score = 36.2 bits (18), Expect = 4.9
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 8      aattaaaaataactgcct 25
              ||||||||||||||||||
Sbjct: 110144 aattaaaaataactgcct 110127
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>emb|BX465184.7| Zebrafish DNA sequence from clone DKEY-20N10 in linkage group 20,
             complete sequence
          Length = 139351

 Score = 36.2 bits (18), Expect = 4.9
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 23    ccttttctttgatagagc 40
             ||||||||||||||||||
Sbjct: 60366 ccttttctttgatagagc 60383
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>emb|CR942552.2| Xenopus tropicalis finished cDNA, clone TEgg107p05
          Length = 1872

 Score = 36.2 bits (18), Expect = 4.9
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 25   ttttctttgatagagcac 42
            ||||||||||||||||||
Sbjct: 1293 ttttctttgatagagcac 1276
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>gb|AC109143.19| Mus musculus chromosome 1, clone RP23-105D15, complete sequence
          Length = 211924

 Score = 36.2 bits (18), Expect = 4.9
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 2     gataggaattaaaaataa 19
             ||||||||||||||||||
Sbjct: 32428 gataggaattaaaaataa 32445
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 36.2 bits (18), Expect = 4.9
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                      
Query: 2        gataggaattaaaaataactgc 23
                |||||||||||| |||||||||
Sbjct: 10710721 gataggaattaagaataactgc 10710700
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>gb|AC140195.3| Mus musculus BAC clone RP24-64A19 from 6, complete sequence
          Length = 156314

 Score = 36.2 bits (18), Expect = 4.9
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 5     aggaattaaaaataactg 22
             ||||||||||||||||||
Sbjct: 59498 aggaattaaaaataactg 59481
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>gb|AC158950.3| Mus musculus chromosome 1, clone RP24-215K13, complete sequence
          Length = 208060

 Score = 36.2 bits (18), Expect = 4.9
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 17     taactgccttttctttga 34
              ||||||||||||||||||
Sbjct: 137954 taactgccttttctttga 137971
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>emb|AL824715.15| Mouse DNA sequence from clone RP23-98P15 on chromosome 2, complete
             sequence
          Length = 180956

 Score = 36.2 bits (18), Expect = 4.9
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 24    cttttctttgatagagca 41
             ||||||||||||||||||
Sbjct: 88534 cttttctttgatagagca 88517
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>emb|AL732443.6| Mouse DNA sequence from clone RP23-90H6 on chromosome X, complete
             sequence
          Length = 219342

 Score = 36.2 bits (18), Expect = 4.9
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 3     ataggaattaaaaataac 20
             ||||||||||||||||||
Sbjct: 40710 ataggaattaaaaataac 40727


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 903,193
Number of Sequences: 3902068
Number of extensions: 903193
Number of successful extensions: 281163
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 280334
Number of HSP's gapped (non-prelim): 829
length of query: 42
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 22
effective length of database: 17,155,003,908
effective search space: 377410085976
effective search space used: 377410085976
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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