ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart36e10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_197765.1| Oryza sativa (japonica cultivar-group) putative... 165 2e-37
2gb|AC084763.4| Oryza sativa chromosome 10 BAC OSJNBa0027P10 geno... 165 2e-37
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 165 2e-37
4gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 165 2e-37
5dbj|AK122086.1| Oryza sativa (japonica cultivar-group) cDNA clon... 157 4e-35
6gb|BT016942.1| Zea mays clone E04912704G01.c mRNA sequence 88 3e-14
7emb|Z76735.1|HS246O8 Human DNA sequence from clone RP1-246O8 on ... 44 0.41
8gb|AY107364.1| Zea mays PCO086106 mRNA sequence 44 0.41
9gb|AC154465.2| Mus musculus BAC clone RP24-146O1 from chromosome... 40 6.5
10gb|AC134537.3| Mus musculus BAC clone RP24-388M1 from chromosome... 40 6.5
11gb|AC125361.4| Mus musculus BAC clone RP23-93M7 from chromosome ... 40 6.5
12gb|AC127232.4| Mus musculus chromosome 15 clone RP24-555P18, com... 40 6.5
13emb|CR762485.16| Zebrafish DNA sequence from clone DKEY-269K12 i... 40 6.5
14gb|AC144732.3| Mus musculus BAC clone RP24-244I18 from chromosom... 40 6.5
15gb|AC132454.3| Mus musculus BAC clone RP23-127P22 from chromosom... 40 6.5
16gb|AC163332.3| Mus musculus chromosome 15, clone RP24-344C17, co... 40 6.5
17dbj|AK163798.1| Mus musculus 16 days embryo head cDNA, RIKEN ful... 40 6.5
18gb|AC102408.10| Mus musculus chromosome 15, clone RP24-351C14, c... 40 6.5
19emb|BX649545.14| Zebrafish DNA sequence from clone CH211-9N13 in... 40 6.5 
>ref|NM_197765.1| Oryza sativa (japonica cultivar-group) putative WD-40 protein
            (OSJNBa0027P10.14), mRNA
          Length = 1413

 Score =  165 bits (83), Expect = 2e-37
 Identities = 176/207 (85%)
 Strand = Plus / Minus

                                                                        
Query: 273  ttcttcctcgggcagagcggacacaatcgcggcacagcagaacgaatcgcggtccttgag 332
            ||||||||| |||| ||  || ||||| |||||||||||||| ||||| |||||||| ||
Sbjct: 1374 ttcttcctctggcaaaggagagacaattgcggcacagcagaaagaatcacggtccttcag 1315

                                                                        
Query: 333  gaggaggcagcttcccgctgagttccatttcaggtcgactatccggaagttcggcaaggg 392
            |||||||||  ||||  ||||||||||||||| ||| || | ||| ||||| ||||| ||
Sbjct: 1314 gaggaggcaagttccatctgagttccatttcaagtccacaacccgaaagtttggcaacgg 1255

                                                                        
Query: 393  aatgttgacgcagcaagcgccggatggcgtccacatgtacaggtgcgggctctccgtgca 452
            || |||||||||||| || || ||||| |||||||||||||||||||| |||||||||||
Sbjct: 1254 aacgttgacgcagcatgcaccagatggtgtccacatgtacaggtgcggactctccgtgca 1195

                                       
Query: 453  caagacgaggcgtgggcacgtagggtc 479
             || || |||||||||||  |||||||
Sbjct: 1194 gaaaacaaggcgtgggcaattagggtc 1168
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>gb|AC084763.4| Oryza sativa chromosome 10 BAC OSJNBa0027P10 genomic sequence, complete
             sequence
          Length = 141307

 Score =  165 bits (83), Expect = 2e-37
 Identities = 176/207 (85%)
 Strand = Plus / Plus

                                                                         
Query: 273   ttcttcctcgggcagagcggacacaatcgcggcacagcagaacgaatcgcggtccttgag 332
             ||||||||| |||| ||  || ||||| |||||||||||||| ||||| |||||||| ||
Sbjct: 32425 ttcttcctctggcaaaggagagacaattgcggcacagcagaaagaatcacggtccttcag 32484

                                                                         
Query: 333   gaggaggcagcttcccgctgagttccatttcaggtcgactatccggaagttcggcaaggg 392
             |||||||||  ||||  ||||||||||||||| ||| || | ||| ||||| ||||| ||
Sbjct: 32485 gaggaggcaagttccatctgagttccatttcaagtccacaacccgaaagtttggcaacgg 32544

                                                                         
Query: 393   aatgttgacgcagcaagcgccggatggcgtccacatgtacaggtgcgggctctccgtgca 452
             || |||||||||||| || || ||||| |||||||||||||||||||| |||||||||||
Sbjct: 32545 aacgttgacgcagcatgcaccagatggtgtccacatgtacaggtgcggactctccgtgca 32604

                                        
Query: 453   caagacgaggcgtgggcacgtagggtc 479
              || || |||||||||||  |||||||
Sbjct: 32605 gaaaacaaggcgtgggcaattagggtc 32631
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  165 bits (83), Expect = 2e-37
 Identities = 176/207 (85%)
 Strand = Plus / Plus

                                                                            
Query: 273      ttcttcctcgggcagagcggacacaatcgcggcacagcagaacgaatcgcggtccttgag 332
                ||||||||| |||| ||  || ||||| |||||||||||||| ||||| |||||||| ||
Sbjct: 21717742 ttcttcctctggcaaaggagagacaattgcggcacagcagaaagaatcacggtccttcag 21717801

                                                                            
Query: 333      gaggaggcagcttcccgctgagttccatttcaggtcgactatccggaagttcggcaaggg 392
                |||||||||  ||||  ||||||||||||||| ||| || | ||| ||||| ||||| ||
Sbjct: 21717802 gaggaggcaagttccatctgagttccatttcaagtccacaacccgaaagtttggcaacgg 21717861

                                                                            
Query: 393      aatgttgacgcagcaagcgccggatggcgtccacatgtacaggtgcgggctctccgtgca 452
                || |||||||||||| || || ||||| |||||||||||||||||||| |||||||||||
Sbjct: 21717862 aacgttgacgcagcatgcaccagatggtgtccacatgtacaggtgcggactctccgtgca 21717921

                                           
Query: 453      caagacgaggcgtgggcacgtagggtc 479
                 || || |||||||||||  |||||||
Sbjct: 21717922 gaaaacaaggcgtgggcaattagggtc 21717948
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  165 bits (83), Expect = 2e-37
 Identities = 176/207 (85%)
 Strand = Plus / Plus

                                                                            
Query: 273      ttcttcctcgggcagagcggacacaatcgcggcacagcagaacgaatcgcggtccttgag 332
                ||||||||| |||| ||  || ||||| |||||||||||||| ||||| |||||||| ||
Sbjct: 21729405 ttcttcctctggcaaaggagagacaattgcggcacagcagaaagaatcacggtccttcag 21729464

                                                                            
Query: 333      gaggaggcagcttcccgctgagttccatttcaggtcgactatccggaagttcggcaaggg 392
                |||||||||  ||||  ||||||||||||||| ||| || | ||| ||||| ||||| ||
Sbjct: 21729465 gaggaggcaagttccatctgagttccatttcaagtccacaacccgaaagtttggcaacgg 21729524

                                                                            
Query: 393      aatgttgacgcagcaagcgccggatggcgtccacatgtacaggtgcgggctctccgtgca 452
                || |||||||||||| || || ||||| |||||||||||||||||||| |||||||||||
Sbjct: 21729525 aacgttgacgcagcatgcaccagatggtgtccacatgtacaggtgcggactctccgtgca 21729584

                                           
Query: 453      caagacgaggcgtgggcacgtagggtc 479
                 || || |||||||||||  |||||||
Sbjct: 21729585 gaaaacaaggcgtgggcaattagggtc 21729611
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>dbj|AK122086.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033122L07, full
            insert sequence
          Length = 1951

 Score =  157 bits (79), Expect = 4e-35
 Identities = 175/207 (84%)
 Strand = Plus / Minus

                                                                        
Query: 273  ttcttcctcgggcagagcggacacaatcgcggcacagcagaacgaatcgcggtccttgag 332
            ||||||||| |||| ||  || ||||| |||||||||||||| ||||| |||||||| ||
Sbjct: 1548 ttcttcctctggcaaaggagagacaattgcggcacagcagaaagaatcacggtccttcag 1489

                                                                        
Query: 333  gaggaggcagcttcccgctgagttccatttcaggtcgactatccggaagttcggcaaggg 392
            |||||||||  ||||  ||||||||||||||| ||| || | ||| ||||| ||||| ||
Sbjct: 1488 gaggaggcaagttccatctgagttccatttcaagtccacaacccgaaagtttggcaacgg 1429

                                                                        
Query: 393  aatgttgacgcagcaagcgccggatggcgtccacatgtacaggtgcgggctctccgtgca 452
            || |||||||||||| || || ||||| |||||||||||||||||||  |||||||||||
Sbjct: 1428 aacgttgacgcagcatgcaccagatggtgtccacatgtacaggtgcgtactctccgtgca 1369

                                       
Query: 453  caagacgaggcgtgggcacgtagggtc 479
             || || |||||||||||  |||||||
Sbjct: 1368 gaaaacaaggcgtgggcaattagggtc 1342
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>gb|BT016942.1| Zea mays clone E04912704G01.c mRNA sequence
          Length = 1119

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 80/92 (86%)
 Strand = Plus / Plus

                                                                       
Query: 388 aagggaatgttgacgcagcaagcgccggatggcgtccacatgtacaggtgcgggctctcc 447
           ||||| |||||||| ||||| || |||||||||||||||||||||| ||| |||||||| 
Sbjct: 483 aaggggatgttgacacagcaggcaccggatggcgtccacatgtacaagtgagggctctct 542

                                           
Query: 448 gtgcacaagacgaggcgtgggcacgtagggtc 479
           ||||| || || ||||||| ||| ||||||||
Sbjct: 543 gtgcataaaacaaggcgtgtgcaggtagggtc 574
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>emb|Z76735.1|HS246O8 Human DNA sequence from clone RP1-246O8 on chromosome X, complete
             sequence
          Length = 175745

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 92    attcttccgtgttcctcaccct 113
             ||||||||||||||||||||||
Sbjct: 82779 attcttccgtgttcctcaccct 82758
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>gb|AY107364.1| Zea mays PCO086106 mRNA sequence
          Length = 440

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                     
Query: 303 ggcacagcagaacgaatcgcggtccttgaggaggaggcagct 344
           |||||||||||| || ||||| ||||| |||||||| |||||
Sbjct: 74  ggcacagcagaaagattcgcgctccttcaggaggagacagct 33
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>gb|AC154465.2| Mus musculus BAC clone RP24-146O1 from chromosome 14, complete sequence
          Length = 189186

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 193    atggctacaattcaaactga 212
              ||||||||||||||||||||
Sbjct: 139089 atggctacaattcaaactga 139070
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>gb|AC134537.3| Mus musculus BAC clone RP24-388M1 from chromosome 12, complete sequence
          Length = 221662

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 63    aacagcagttgtataacagaagaaacaa 90
             ||||||||||| | ||||||||||||||
Sbjct: 19046 aacagcagttgaaaaacagaagaaacaa 19073
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>gb|AC125361.4| Mus musculus BAC clone RP23-93M7 from chromosome 12, complete sequence
          Length = 202234

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 63    aacagcagttgtataacagaagaaacaa 90
             ||||||||||| | ||||||||||||||
Sbjct: 36932 aacagcagttgaaaaacagaagaaacaa 36905
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>gb|AC127232.4| Mus musculus chromosome 15 clone RP24-555P18, complete sequence
          Length = 190930

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                         
Query: 18    ttgattttgtgctctctacaaaatctgt 45
             ||||||||||| ||||||||||||||||
Sbjct: 95505 ttgattttgtg-tctctacaaaatctgt 95531
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>emb|CR762485.16| Zebrafish DNA sequence from clone DKEY-269K12 in linkage group 19,
             complete sequence
          Length = 171225

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 213   cagcaagcaagacacgggag 232
             ||||||||||||||||||||
Sbjct: 97693 cagcaagcaagacacgggag 97674
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>gb|AC144732.3| Mus musculus BAC clone RP24-244I18 from chromosome 15, complete sequence
          Length = 151944

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                          
Query: 18     ttgattttgtgctctctacaaaatctgt 45
              ||||||||||| ||||||||||||||||
Sbjct: 137535 ttgattttgtg-tctctacaaaatctgt 137509
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>gb|AC132454.3| Mus musculus BAC clone RP23-127P22 from chromosome 19, complete
             sequence
          Length = 225152

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 197   ctacaattcaaactgacagc 216
             ||||||||||||||||||||
Sbjct: 67372 ctacaattcaaactgacagc 67353
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>gb|AC163332.3| Mus musculus chromosome 15, clone RP24-344C17, complete sequence
          Length = 164408

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 175   taataatttccattgataat 194
             ||||||||||||||||||||
Sbjct: 51679 taataatttccattgataat 51660
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>dbj|AK163798.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
           library, clone:C130036K15 product:unclassifiable, full
           insert sequence
          Length = 2827

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 63  aacagcagttgtataacagaagaaacaa 90
           ||||||||||| | ||||||||||||||
Sbjct: 623 aacagcagttgaaaaacagaagaaacaa 650
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>gb|AC102408.10| Mus musculus chromosome 15, clone RP24-351C14, complete sequence
          Length = 190773

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 175   taataatttccattgataat 194
             ||||||||||||||||||||
Sbjct: 27567 taataatttccattgataat 27586
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>emb|BX649545.14| Zebrafish DNA sequence from clone CH211-9N13 in linkage group 19,
             complete sequence
          Length = 169802

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 213   cagcaagcaagacacgggag 232
             ||||||||||||||||||||
Sbjct: 52830 cagcaagcaagacacgggag 52811


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,391,268
Number of Sequences: 3902068
Number of extensions: 3391268
Number of successful extensions: 62804
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 62759
Number of HSP's gapped (non-prelim): 47
length of query: 479
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 457
effective length of database: 17,147,199,772
effective search space: 7836270295804
effective search space used: 7836270295804
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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