ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart36e01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PPDK_GIALA (P51776) Pyruvate, phosphate dikinase (EC 2.7.9.1) (P... 29 6.0
2SFR17_HUMAN (Q8TF01) Splicing factor, arginine/serine-rich 130 (... 29 6.0
3MAF_AVIS4 (P23091) Transforming protein Maf 28 7.9
4MAF_HUMAN (O75444) Transcription factor Maf (Proto-oncogene c-maf) 28 7.9
5KCC4_YEAST (P25389) Probable serine/threonine-protein kinase KCC... 28 7.9
6MAF_MOUSE (P54843) Transcription factor Maf (Proto-oncogene c-maf) 28 7.9

>PPDK_GIALA (P51776) Pyruvate, phosphate dikinase (EC 2.7.9.1) (Pyruvate,|
           orthophosphate dikinase)
          Length = 884

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 15/49 (30%), Positives = 30/49 (61%)
 Frame = -3

Query: 398 IASVVILKAPLPLDGTRMLASCVTKEHSQEFARGMKEDLP*ASDFPLLD 252
           +A+++ L  P+PL  T    +CV  + +  + +G+KE++  AS+  LL+
Sbjct: 34  LAAMIKLGMPVPLGFTITCQTCVEYQKTASWPKGLKEEV--ASNLKLLE 80



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>SFR17_HUMAN (Q8TF01) Splicing factor, arginine/serine-rich 130|
           (Serine-arginine-rich splicing regulatory protein 130)
           (SRrp130) (SR-rich protein) (SR-related protein)
          Length = 805

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 19/64 (29%), Positives = 34/64 (53%)
 Frame = +1

Query: 205 NQTTVSAAPRREDLLRSSKGKSLAHGRSSFMPRANSCECSLVTQLASILVPSSGSGALRM 384
           N+TT    P++E   +  +G+S +   SS  P +NS   S  + ++S    SS SG+ R 
Sbjct: 487 NETTSVLEPKKEHKEKEKQGRSRSGSSSSGSPSSNSRTSSTSSTVSSSSY-SSSSGSSRT 545

Query: 385 TTEA 396
           ++ +
Sbjct: 546 SSRS 549



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>MAF_AVIS4 (P23091) Transforming protein Maf|
          Length = 369

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 21/67 (31%), Positives = 29/67 (43%)
 Frame = +1

Query: 187 ISSNDINQTTVSAAPRREDLLRSSKGKSLAHGRSSFMPRANSCECSLVTQLASILVPSSG 366
           ++  D+ +  V   P   D + S  G+ +A G  S  P   S  CS V    S   PS G
Sbjct: 22  VNDFDLMKFEVKKEPVETDRIISQCGRLIAGGSLSSTPM--STPCSSVPPSPSFSAPSPG 79

Query: 367 SGALRMT 387
           SG  + T
Sbjct: 80  SGTDQKT 86



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>MAF_HUMAN (O75444) Transcription factor Maf (Proto-oncogene c-maf)|
          Length = 403

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 20/63 (31%), Positives = 28/63 (44%)
 Frame = +1

Query: 187 ISSNDINQTTVSAAPRREDLLRSSKGKSLAHGRSSFMPRANSCECSLVTQLASILVPSSG 366
           ++  D+ +  V   P   D + S  G+ +A G  S  P   S  CS V    S   PS G
Sbjct: 22  VNDFDLMKFEVKKEPVETDRIISQCGRLIAGGSLSSTPM--STPCSSVPPSPSFSAPSPG 79

Query: 367 SGA 375
           SG+
Sbjct: 80  SGS 82



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>KCC4_YEAST (P25389) Probable serine/threonine-protein kinase KCC4 (EC|
           2.7.11.1)
          Length = 1037

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 19/68 (27%), Positives = 33/68 (48%)
 Frame = +1

Query: 121 RNKVSTAKTRAAVHQNRYKYNNISSNDINQTTVSAAPRREDLLRSSKGKSLAHGRSSFMP 300
           RNK+   K     ++     ++ SS  +N  ++ + PRR    R S+  S +  RSSF+ 
Sbjct: 376 RNKIKKTKK----NKRSSTLSSSSSLLLNNRSIQSTPRRRTSKRHSREFSSSRKRSSFLL 431

Query: 301 RANSCECS 324
            +N  + S
Sbjct: 432 SSNPTDSS 439



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>MAF_MOUSE (P54843) Transcription factor Maf (Proto-oncogene c-maf)|
          Length = 370

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 20/63 (31%), Positives = 28/63 (44%)
 Frame = +1

Query: 187 ISSNDINQTTVSAAPRREDLLRSSKGKSLAHGRSSFMPRANSCECSLVTQLASILVPSSG 366
           ++  D+ +  V   P   D + S  G+ +A G  S  P   S  CS V    S   PS G
Sbjct: 22  VNDFDLMKFEVKKEPVETDRIISQCGRLIAGGSLSSTPM--STPCSSVPPSPSFSAPSPG 79

Query: 367 SGA 375
           SG+
Sbjct: 80  SGS 82


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,351,061
Number of Sequences: 219361
Number of extensions: 816069
Number of successful extensions: 2509
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2509
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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