ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart36d07 |
|---|---|
| Clone Library Name | barley_pub |
>RS6_ASPOF (Q9M3V8) 40S ribosomal protein S6| Length = 251 Score = 62.8 bits (151), Expect = 5e-10 Identities = 34/55 (61%), Positives = 38/55 (69%) Frame = -1 Query: 494 PLTIQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRRSKLS 330 PLT+Q KSEAAEYQKLLA RLKEQRDRRSES+AK+RS+LS Sbjct: 186 PLTLQRKRARIAEKKKRVAKAKSEAAEYQKLLASRLKEQRDRRSESLAKKRSRLS 240
>RS6A_ARATH (O48549) 40S ribosomal protein S6-1| Length = 250 Score = 60.5 bits (145), Expect = 2e-09 Identities = 31/55 (56%), Positives = 37/55 (67%) Frame = -1 Query: 494 PLTIQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRRSKLS 330 PLT+Q S+AA+YQKLLA RLKEQRDRRSES+AK+RS+LS Sbjct: 186 PLTLQRKRARIADKKKKIAKANSDAADYQKLLASRLKEQRDRRSESLAKKRSRLS 240
>RS6B_ARATH (P51430) 40S ribosomal protein S6-2| Length = 249 Score = 60.5 bits (145), Expect = 2e-09 Identities = 31/55 (56%), Positives = 37/55 (67%) Frame = -1 Query: 494 PLTIQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRRSKLS 330 PLT+Q S+AA+YQKLLA RLKEQRDRRSES+AK+RS+LS Sbjct: 186 PLTLQRKRARIADKKKRIAKANSDAADYQKLLASRLKEQRDRRSESLAKKRSRLS 240
>RS6_TOBAC (P29345) 40S ribosomal protein S6 (Fragment)| Length = 199 Score = 60.1 bits (144), Expect = 3e-09 Identities = 32/55 (58%), Positives = 38/55 (69%) Frame = -1 Query: 494 PLTIQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRRSKLS 330 PLT+Q KSEAAEYQKLLA RLKEQR++RSES+AK+RS+LS Sbjct: 136 PLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQREKRSESLAKKRSRLS 190
>RS6_ICTPU (Q90YR8) 40S ribosomal protein S6| Length = 249 Score = 41.6 bits (96), Expect = 0.001 Identities = 19/28 (67%), Positives = 24/28 (85%) Frame = -1 Query: 425 EAAEYQKLLAQRLKEQRDRRSESMAKRR 342 EAAEY KLLA+RLKE +++R E +AKRR Sbjct: 205 EAAEYAKLLAKRLKEAKEKRQEKIAKRR 232
>RS6_RAT (P62755) 40S ribosomal protein S6| Length = 249 Score = 40.8 bits (94), Expect = 0.002 Identities = 18/28 (64%), Positives = 24/28 (85%) Frame = -1 Query: 425 EAAEYQKLLAQRLKEQRDRRSESMAKRR 342 EAAEY KLLA+R+KE +++R E +AKRR Sbjct: 205 EAAEYAKLLAKRMKEAKEKRQEQIAKRR 232
>RS6_MOUSE (P62754) 40S ribosomal protein S6 (Phosphoprotein NP33)| Length = 249 Score = 40.8 bits (94), Expect = 0.002 Identities = 18/28 (64%), Positives = 24/28 (85%) Frame = -1 Query: 425 EAAEYQKLLAQRLKEQRDRRSESMAKRR 342 EAAEY KLLA+R+KE +++R E +AKRR Sbjct: 205 EAAEYAKLLAKRMKEAKEKRQEQIAKRR 232
>RS6_HUMAN (P62753) 40S ribosomal protein S6 (Phosphoprotein NP33)| Length = 249 Score = 40.8 bits (94), Expect = 0.002 Identities = 18/28 (64%), Positives = 24/28 (85%) Frame = -1 Query: 425 EAAEYQKLLAQRLKEQRDRRSESMAKRR 342 EAAEY KLLA+R+KE +++R E +AKRR Sbjct: 205 EAAEYAKLLAKRMKEAKEKRQEQIAKRR 232
>RS6_ONCMY (Q9YGF2) 40S ribosomal protein S6| Length = 249 Score = 39.7 bits (91), Expect = 0.004 Identities = 17/28 (60%), Positives = 24/28 (85%) Frame = -1 Query: 425 EAAEYQKLLAQRLKEQRDRRSESMAKRR 342 EA+EY KLLA+R+KE +++R E +AKRR Sbjct: 205 EASEYAKLLAKRMKEAKEKRQEQIAKRR 232
>RS6_CHICK (P47838) 40S ribosomal protein S6| Length = 249 Score = 39.7 bits (91), Expect = 0.004 Identities = 17/28 (60%), Positives = 24/28 (85%) Frame = -1 Query: 425 EAAEYQKLLAQRLKEQRDRRSESMAKRR 342 EAA+Y KLLA+R+KE +++R E +AKRR Sbjct: 205 EAADYAKLLAKRMKEAKEKRQEQIAKRR 232
>RS6_XENLA (P39017) 40S ribosomal protein S6| Length = 249 Score = 38.1 bits (87), Expect = 0.013 Identities = 17/28 (60%), Positives = 23/28 (82%) Frame = -1 Query: 425 EAAEYQKLLAQRLKEQRDRRSESMAKRR 342 EA+EY KLLA+R KE +++R E +AKRR Sbjct: 205 EASEYAKLLAKRSKEAKEKRQEQIAKRR 232
>RS6_MANSE (Q94624) 40S ribosomal protein S6| Length = 253 Score = 35.0 bits (79), Expect = 0.11 Identities = 17/30 (56%), Positives = 21/30 (70%) Frame = -1 Query: 428 SEAAEYQKLLAQRLKEQRDRRSESMAKRRS 339 S A+Y KLLAQR KE + RR E + +RRS Sbjct: 208 SAEADYAKLLAQRKKESKVRRQEEIKRRRS 237
>RS6_SPOFR (Q95V32) 40S ribosomal protein S6| Length = 253 Score = 33.1 bits (74), Expect = 0.41 Identities = 15/26 (57%), Positives = 19/26 (73%) Frame = -1 Query: 416 EYQKLLAQRLKEQRDRRSESMAKRRS 339 +Y KLLAQR KE + RR E + +RRS Sbjct: 212 DYAKLLAQRKKESKVRRQEELKRRRS 237
>RS6_DEBHA (Q6BXH8) 40S ribosomal protein S6| Length = 236 Score = 33.1 bits (74), Expect = 0.41 Identities = 19/54 (35%), Positives = 26/54 (48%) Frame = -1 Query: 494 PLTIQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRRSKL 333 P T+Q + AAEY +LLAQRL E++ R+E +R S L Sbjct: 181 PQTLQRKRALKAQKVKNAQQQRDAAAEYAQLLAQRLHERKAERAEIKKRRASSL 234
>RS6_APLCA (Q9BMX5) 40S ribosomal protein S6| Length = 247 Score = 31.6 bits (70), Expect = 1.2 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Frame = -1 Query: 494 PLTIQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSE-SMAKRRSK 336 P+ +Q + + AEY KLLAQR+KE ++R+ E + RSK Sbjct: 183 PVVLQRKRARMALKKKRVTKKREDHAEYTKLLAQRMKEAKERKMERKRSNSRSK 236
>RS6_CANGA (Q6FJH3) 40S ribosomal protein S6| Length = 236 Score = 30.8 bits (68), Expect = 2.1 Identities = 14/30 (46%), Positives = 22/30 (73%) Frame = -1 Query: 422 AAEYQKLLAQRLKEQRDRRSESMAKRRSKL 333 AAEY +LLA+RL E++ ++E+ +R S L Sbjct: 205 AAEYAQLLAKRLAERKAEKAETRKRRASSL 234
>RS6_ASHGO (Q74ZK3) 40S ribosomal protein S6| Length = 236 Score = 30.4 bits (67), Expect = 2.7 Identities = 14/30 (46%), Positives = 21/30 (70%) Frame = -1 Query: 422 AAEYQKLLAQRLKEQRDRRSESMAKRRSKL 333 AAEY +LLA+RL E++ ++E +R S L Sbjct: 205 AAEYAQLLAKRLTEKKAEKAEERKRRASSL 234
>RS6_YARLI (Q6C169) 40S ribosomal protein S6| Length = 242 Score = 30.0 bits (66), Expect = 3.5 Identities = 13/30 (43%), Positives = 21/30 (70%) Frame = -1 Query: 422 AAEYQKLLAQRLKEQRDRRSESMAKRRSKL 333 AAEY +LLA+R+ E++ ++E +R S L Sbjct: 206 AAEYAQLLAKRVAEKKSEKAEEKKRRASSL 235
>RS6_YEAST (P02365) 40S ribosomal protein S6 (S10) (YS4) (RP9)| Length = 236 Score = 30.0 bits (66), Expect = 3.5 Identities = 14/30 (46%), Positives = 21/30 (70%) Frame = -1 Query: 422 AAEYQKLLAQRLKEQRDRRSESMAKRRSKL 333 AAEY +LLA+RL E++ ++E +R S L Sbjct: 205 AAEYAQLLAKRLSERKAEKAEIRKRRASSL 234
>RS6_KLULA (Q6CM04) 40S ribosomal protein S6| Length = 236 Score = 30.0 bits (66), Expect = 3.5 Identities = 14/30 (46%), Positives = 21/30 (70%) Frame = -1 Query: 422 AAEYQKLLAQRLKEQRDRRSESMAKRRSKL 333 AAEY +LLA+RL E++ ++E +R S L Sbjct: 205 AAEYAQLLAKRLSERKAEKAEVRKRRASSL 234
>RS6A_SCHPO (P05752) 40S ribosomal protein S6-A| Length = 239 Score = 29.6 bits (65), Expect = 4.6 Identities = 16/54 (29%), Positives = 26/54 (48%) Frame = -1 Query: 494 PLTIQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRRSKL 333 P T+Q + EAAE+ +L+A+R+ E + +R A+R S L Sbjct: 184 PRTLQHKRHRFALKRRQAEKNREEAAEFAQLMAKRVAEAKQKREVVKARRASSL 237
>RS6_DROME (P29327) 40S ribosomal protein S6| Length = 248 Score = 29.3 bits (64), Expect = 6.0 Identities = 12/30 (40%), Positives = 20/30 (66%) Frame = -1 Query: 422 AAEYQKLLAQRLKEQRDRRSESMAKRRSKL 333 +A+Y KLL QR KE + +R E+ +R + + Sbjct: 207 SADYAKLLVQRKKESKAKREEAKRRRSASI 236
>GDA6_WHEAT (P04726) Alpha/beta-gliadin clone PW1215 precursor (Prolamin)| Length = 296 Score = 29.3 bits (64), Expect = 6.0 Identities = 16/45 (35%), Positives = 20/45 (44%) Frame = +2 Query: 293 HLKQRQQEPW*QQKASTSSWPCSHSCGLFAPSTSVQAASGTLQPQ 427 H +QRQQ+P Q G F PS A G++QPQ Sbjct: 211 HQQQRQQQPSSQVSLQQPQQQYPSGQGFFQPSQQNPQAQGSVQPQ 255
>RS6_BRAFL (O01727) 40S ribosomal protein S6| Length = 244 Score = 28.9 bits (63), Expect = 7.8 Identities = 17/29 (58%), Positives = 20/29 (68%) Frame = -1 Query: 425 EAAEYQKLLAQRLKEQRDRRSESMAKRRS 339 E A Y KLLA+R KE+R E+ AKRRS Sbjct: 206 EEATYAKLLAKRKKEER----EAHAKRRS 230
>SPIKE_FIPV (P10033) Spike glycoprotein precursor (Peplomer protein) (E2)| Length = 1452 Score = 28.9 bits (63), Expect = 7.8 Identities = 9/17 (52%), Positives = 11/17 (64%) Frame = -3 Query: 333 FCCYQGSCCLCLRCLQS 283 FCC+ CC C+ CL S Sbjct: 1413 FCCFSTGCCGCIGCLGS 1429 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,117,751 Number of Sequences: 219361 Number of extensions: 899687 Number of successful extensions: 2242 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 2189 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2239 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3465624120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
