ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart36d05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RS3_BURS3 (Q39KG1) 30S ribosomal protein S3 33 0.33
2RS3_BURPS (Q63Q17) 30S ribosomal protein S3 32 0.95
3RS3_BURP1 (Q3JMR9) 30S ribosomal protein S3 32 0.95
4RS3_BURMA (Q62GL1) 30S ribosomal protein S3 32 0.95
5ORYC_ORYSA (P25778) Oryzain gamma chain precursor (EC 3.4.22.-) 30 2.8
6Y176_METTH (O26278) Hypothetical protein MTH176 29 6.2
7RNS1G_RAT (Q8VD89) Ribonuclease pancreatic gamma-type precursor ... 28 8.1

>RS3_BURS3 (Q39KG1) 30S ribosomal protein S3|
          Length = 266

 Score = 33.1 bits (74), Expect = 0.33
 Identities = 17/38 (44%), Positives = 20/38 (52%)
 Frame = +3

Query: 288 DRRPHRAQQPPVRRPRLGLHGLDEAVRHGANGRGIGEP 401
           D+RP R  +P  RRPR    G     R GA  RG G+P
Sbjct: 222 DKRPRRNARPGDRRPRRDGEGGAPGARRGAPRRGAGKP 259



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>RS3_BURPS (Q63Q17) 30S ribosomal protein S3|
          Length = 266

 Score = 31.6 bits (70), Expect = 0.95
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +3

Query: 288 DRRPHRAQQPPVRRPRLGLHGLDEAVRHGANGRGIGEP 401
           D+RP R  +P  RRPR    G     R G   RG G+P
Sbjct: 222 DKRPRRNARPGDRRPRRDGEGGAPGARRGGPRRGAGKP 259



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>RS3_BURP1 (Q3JMR9) 30S ribosomal protein S3|
          Length = 266

 Score = 31.6 bits (70), Expect = 0.95
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +3

Query: 288 DRRPHRAQQPPVRRPRLGLHGLDEAVRHGANGRGIGEP 401
           D+RP R  +P  RRPR    G     R G   RG G+P
Sbjct: 222 DKRPRRNARPGDRRPRRDGEGGAPGARRGGPRRGAGKP 259



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>RS3_BURMA (Q62GL1) 30S ribosomal protein S3|
          Length = 266

 Score = 31.6 bits (70), Expect = 0.95
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +3

Query: 288 DRRPHRAQQPPVRRPRLGLHGLDEAVRHGANGRGIGEP 401
           D+RP R  +P  RRPR    G     R G   RG G+P
Sbjct: 222 DKRPRRNARPGDRRPRRDGEGGAPGARRGGPRRGAGKP 259



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>ORYC_ORYSA (P25778) Oryzain gamma chain precursor (EC 3.4.22.-)|
          Length = 362

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -2

Query: 413 SSTQGFPDSSAIGAMTDSFIKAVESEPGTTYGRLLGAMR 297
           +++ GF DS+ I ++TD    A+ES      GR  GA+R
Sbjct: 23  AASSGFDDSNPIRSVTDHAASALESTVIAALGRTRGALR 61



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>Y176_METTH (O26278) Hypothetical protein MTH176|
          Length = 665

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +1

Query: 292 VALIAPSSRPYVVPGSDSTALMKLSVMAPMAEESGNPWVLDSADFWSSLQPL 447
           +AL+APS RPY      S+   ++   + +  +SG PW +   D    + PL
Sbjct: 405 LALVAPSRRPY-----SSSLPARIGGFSSLRPQSGGPWRVVVVDLPFGIIPL 451



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>RNS1G_RAT (Q8VD89) Ribonuclease pancreatic gamma-type precursor (EC 3.1.27.5)|
           (RNase 1 gamma)
          Length = 152

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 10  CGSVWTFILIPLSTVQLKCPVPFAHKSQVQCRTGRQH 120
           C S+ TF+  PL+TVQ  C      + QV C+ GR +
Sbjct: 68  CKSMNTFVHEPLATVQAIC-----SQGQVTCKNGRNN 99


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,235,875
Number of Sequences: 219361
Number of extensions: 923180
Number of successful extensions: 3087
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3087
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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