ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart36d05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_470792.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1203 Score = 184 bits (93), Expect = 2e-43 Identities = 202/237 (85%), Gaps = 6/237 (2%) Strand = Plus / Minus Query: 141 tcacaggagaaaaggcttccggtagatgtcgaacatctcggaagagcagagctggggctc 200 |||||||||||| || |||| |||||||||||||| ||| || | ||| ||||| ||||| Sbjct: 1203 tcacaggagaaacggtttcctgtagatgtcgaacacctccgacgcgcaaagctgcggctc 1144 Query: 201 ctgcacgccgccggaggtgatcatcttgcgaacgaaggagccgatccgcccggggaggag 260 ||||||||||||||| | |||||||||||| ||||||||||||| || ||||||||||| Sbjct: 1143 ctgcacgccgccggacgggatcatcttgcggacgaaggagccgaggcggccggggaggag 1084 Query: 261 gcggcggccg--gcccc----ctggccgtcccggatcgtcgccctcatcgcgcccagcag 314 || ||| || || || ||| || |||||||||||||||| |||||| ||||||| Sbjct: 1083 ccgccggacgctgctcccctgctgcccctcccggatcgtcgcccgcatcgccgccagcag 1024 Query: 315 ccgcccgtacgtcgtccccggctcggactccacggccttgatgaagctgtccgtcat 371 |||||||||||||||||| ||||| |||||||| ||| |||||||||||| |||||| Sbjct: 1023 ccgcccgtacgtcgtcccgggctccgactccaccgccctgatgaagctgtacgtcat 967
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 139 bits (70), Expect = 9e-30 Identities = 152/178 (85%), Gaps = 6/178 (3%) Strand = Plus / Plus Query: 200 cctgcacgccgccggaggtgatcatcttgcgaacgaaggagccgatccgcccggggagga 259 |||||||||||||||| | |||||||||||| ||||||||||||| || |||||||||| Sbjct: 15401810 cctgcacgccgccggacgggatcatcttgcggacgaaggagccgaggcggccggggagga 15401869 Query: 260 ggcggcggccgg----cccc--ctggccgtcccggatcgtcgccctcatcgcgcccagca 313 | || ||| || |||| ||| || |||||||||||||||| |||||| |||||| Sbjct: 15401870 gccgccggacgctgctcccctgctgcccctcccggatcgtcgcccgcatcgccgccagca 15401929 Query: 314 gccgcccgtacgtcgtccccggctcggactccacggccttgatgaagctgtccgtcat 371 ||||||||||||||||||| ||||| |||||||| ||| |||||||||||| |||||| Sbjct: 15401930 gccgcccgtacgtcgtcccgggctccgactccaccgccctgatgaagctgtacgtcat 15401987 Score = 113 bits (57), Expect = 5e-22 Identities = 81/89 (91%) Strand = Plus / Plus Query: 286 cggatcgtcgccctcatcgcgcccagcagccgcccgtacgtcgtccccggctcggactcc 345 ||||| ||||||| |||||||| |||||||||||||||||||||||| ||||| | |||| Sbjct: 15423348 cggatggtcgcccgcatcgcgctcagcagccgcccgtacgtcgtccctggctccgtctcc 15423407 Query: 346 acggccttgatgaagctgtccgtcatggc 374 || |||||||||||||||| ||||||||| Sbjct: 15423408 accgccttgatgaagctgtacgtcatggc 15423436 Score = 60.0 bits (30), Expect = 7e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 333 cggctcggactccacggccttgatgaagctgtccgtcatggc 374 ||||||| ||||||| |||||||||||||||| ||||||||| Sbjct: 15369471 cggctcgcactccaccgccttgatgaagctgtgcgtcatggc 15369512 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 141 tcacaggagaaaaggcttccggtagatgtcgaacatctcggaagagcagagctggggctc 200 |||||||||||| || |||| |||||||||||||| ||| || | ||| ||||| ||||| Sbjct: 15401653 tcacaggagaaacggtttcctgtagatgtcgaacacctccgacgcgcaaagctgcggctc 15401712 Query: 201 ctgca 205 ||||| Sbjct: 15401713 ctgca 15401717 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 154 ggcttccggtagatgtcgaacatctc 179 ||||| |||||||||||||||||||| Sbjct: 15369159 ggcttgcggtagatgtcgaacatctc 15369184 Score = 42.1 bits (21), Expect = 1.5 Identities = 66/81 (81%) Strand = Plus / Plus Query: 141 tcacaggagaaaaggcttccggtagatgtcgaacatctcggaagagcagagctggggctc 200 ||||| ||| || ||||||| ||||||||| ||| ||| || | ||| ||||||||||| Sbjct: 15423209 tcacaagaggaagggcttcctgtagatgtcaaacggctccgaggcgcacagctggggctc 15423268 Query: 201 ctgcacgccgccggaggtgat 221 |||| ||| || | ||||||| Sbjct: 15423269 ctgcgcgcagctgaaggtgat 15423289
>gb|AC092075.7| Oryza sativa chromosome 3 BAC OSJNBa0017N12 genomic sequence, complete sequence Length = 164705 Score = 139 bits (70), Expect = 9e-30 Identities = 152/178 (85%), Gaps = 6/178 (3%) Strand = Plus / Minus Query: 200 cctgcacgccgccggaggtgatcatcttgcgaacgaaggagccgatccgcccggggagga 259 |||||||||||||||| | |||||||||||| ||||||||||||| || |||||||||| Sbjct: 99716 cctgcacgccgccggacgggatcatcttgcggacgaaggagccgaggcggccggggagga 99657 Query: 260 ggcggcggccgg----cccc--ctggccgtcccggatcgtcgccctcatcgcgcccagca 313 | || ||| || |||| ||| || |||||||||||||||| |||||| |||||| Sbjct: 99656 gccgccggacgctgctcccctgctgcccctcccggatcgtcgcccgcatcgccgccagca 99597 Query: 314 gccgcccgtacgtcgtccccggctcggactccacggccttgatgaagctgtccgtcat 371 ||||||||||||||||||| ||||| |||||||| ||| |||||||||||| |||||| Sbjct: 99596 gccgcccgtacgtcgtcccgggctccgactccaccgccctgatgaagctgtacgtcat 99539 Score = 113 bits (57), Expect = 5e-22 Identities = 81/89 (91%) Strand = Plus / Minus Query: 286 cggatcgtcgccctcatcgcgcccagcagccgcccgtacgtcgtccccggctcggactcc 345 ||||| ||||||| |||||||| |||||||||||||||||||||||| ||||| | |||| Sbjct: 78178 cggatggtcgcccgcatcgcgctcagcagccgcccgtacgtcgtccctggctccgtctcc 78119 Query: 346 acggccttgatgaagctgtccgtcatggc 374 || |||||||||||||||| ||||||||| Sbjct: 78118 accgccttgatgaagctgtacgtcatggc 78090 Score = 60.0 bits (30), Expect = 7e-06 Identities = 39/42 (92%) Strand = Plus / Minus Query: 333 cggctcggactccacggccttgatgaagctgtccgtcatggc 374 ||||||| ||||||| |||||||||||||||| ||||||||| Sbjct: 132055 cggctcgcactccaccgccttgatgaagctgtgcgtcatggc 132014 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 141 tcacaggagaaaaggcttccggtagatgtcgaacatctcggaagagcagagctggggctc 200 |||||||||||| || |||| |||||||||||||| ||| || | ||| ||||| ||||| Sbjct: 99873 tcacaggagaaacggtttcctgtagatgtcgaacacctccgacgcgcaaagctgcggctc 99814 Query: 201 ctgca 205 ||||| Sbjct: 99813 ctgca 99809 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Minus Query: 154 ggcttccggtagatgtcgaacatctc 179 ||||| |||||||||||||||||||| Sbjct: 132367 ggcttgcggtagatgtcgaacatctc 132342 Score = 42.1 bits (21), Expect = 1.5 Identities = 66/81 (81%) Strand = Plus / Minus Query: 141 tcacaggagaaaaggcttccggtagatgtcgaacatctcggaagagcagagctggggctc 200 ||||| ||| || ||||||| ||||||||| ||| ||| || | ||| ||||||||||| Sbjct: 78317 tcacaagaggaagggcttcctgtagatgtcaaacggctccgaggcgcacagctggggctc 78258 Query: 201 ctgcacgccgccggaggtgat 221 |||| ||| || | ||||||| Sbjct: 78257 ctgcgcgcagctgaaggtgat 78237
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 139 bits (70), Expect = 9e-30 Identities = 152/178 (85%), Gaps = 6/178 (3%) Strand = Plus / Plus Query: 200 cctgcacgccgccggaggtgatcatcttgcgaacgaaggagccgatccgcccggggagga 259 |||||||||||||||| | |||||||||||| ||||||||||||| || |||||||||| Sbjct: 15396344 cctgcacgccgccggacgggatcatcttgcggacgaaggagccgaggcggccggggagga 15396403 Query: 260 ggcggcggccgg----cccc--ctggccgtcccggatcgtcgccctcatcgcgcccagca 313 | || ||| || |||| ||| || |||||||||||||||| |||||| |||||| Sbjct: 15396404 gccgccggacgctgctcccctgctgcccctcccggatcgtcgcccgcatcgccgccagca 15396463 Query: 314 gccgcccgtacgtcgtccccggctcggactccacggccttgatgaagctgtccgtcat 371 ||||||||||||||||||| ||||| |||||||| ||| |||||||||||| |||||| Sbjct: 15396464 gccgcccgtacgtcgtcccgggctccgactccaccgccctgatgaagctgtacgtcat 15396521 Score = 113 bits (57), Expect = 5e-22 Identities = 81/89 (91%) Strand = Plus / Plus Query: 286 cggatcgtcgccctcatcgcgcccagcagccgcccgtacgtcgtccccggctcggactcc 345 ||||| ||||||| |||||||| |||||||||||||||||||||||| ||||| | |||| Sbjct: 15417882 cggatggtcgcccgcatcgcgctcagcagccgcccgtacgtcgtccctggctccgtctcc 15417941 Query: 346 acggccttgatgaagctgtccgtcatggc 374 || |||||||||||||||| ||||||||| Sbjct: 15417942 accgccttgatgaagctgtacgtcatggc 15417970 Score = 60.0 bits (30), Expect = 7e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 333 cggctcggactccacggccttgatgaagctgtccgtcatggc 374 ||||||| ||||||| |||||||||||||||| ||||||||| Sbjct: 15364005 cggctcgcactccaccgccttgatgaagctgtgcgtcatggc 15364046 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 141 tcacaggagaaaaggcttccggtagatgtcgaacatctcggaagagcagagctggggctc 200 |||||||||||| || |||| |||||||||||||| ||| || | ||| ||||| ||||| Sbjct: 15396187 tcacaggagaaacggtttcctgtagatgtcgaacacctccgacgcgcaaagctgcggctc 15396246 Query: 201 ctgca 205 ||||| Sbjct: 15396247 ctgca 15396251 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 154 ggcttccggtagatgtcgaacatctc 179 ||||| |||||||||||||||||||| Sbjct: 15363693 ggcttgcggtagatgtcgaacatctc 15363718 Score = 42.1 bits (21), Expect = 1.5 Identities = 66/81 (81%) Strand = Plus / Plus Query: 141 tcacaggagaaaaggcttccggtagatgtcgaacatctcggaagagcagagctggggctc 200 ||||| ||| || ||||||| ||||||||| ||| ||| || | ||| ||||||||||| Sbjct: 15417743 tcacaagaggaagggcttcctgtagatgtcaaacggctccgaggcgcacagctggggctc 15417802 Query: 201 ctgcacgccgccggaggtgat 221 |||| ||| || | ||||||| Sbjct: 15417803 ctgcgcgcagctgaaggtgat 15417823
>ref|XM_470796.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1110 Score = 113 bits (57), Expect = 5e-22 Identities = 81/89 (91%) Strand = Plus / Minus Query: 286 cggatcgtcgccctcatcgcgcccagcagccgcccgtacgtcgtccccggctcggactcc 345 ||||| ||||||| |||||||| |||||||||||||||||||||||| ||||| | |||| Sbjct: 971 cggatggtcgcccgcatcgcgctcagcagccgcccgtacgtcgtccctggctccgtctcc 912 Query: 346 acggccttgatgaagctgtccgtcatggc 374 || |||||||||||||||| ||||||||| Sbjct: 911 accgccttgatgaagctgtacgtcatggc 883 Score = 42.1 bits (21), Expect = 1.5 Identities = 66/81 (81%) Strand = Plus / Minus Query: 141 tcacaggagaaaaggcttccggtagatgtcgaacatctcggaagagcagagctggggctc 200 ||||| ||| || ||||||| ||||||||| ||| ||| || | ||| ||||||||||| Sbjct: 1110 tcacaagaggaagggcttcctgtagatgtcaaacggctccgaggcgcacagctggggctc 1051 Query: 201 ctgcacgccgccggaggtgat 221 |||| ||| || | ||||||| Sbjct: 1050 ctgcgcgcagctgaaggtgat 1030
>ref|XM_470787.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1481 Score = 60.0 bits (30), Expect = 7e-06 Identities = 39/42 (92%) Strand = Plus / Minus Query: 333 cggctcggactccacggccttgatgaagctgtccgtcatggc 374 ||||||| ||||||| |||||||||||||||| ||||||||| Sbjct: 982 cggctcgcactccaccgccttgatgaagctgtgcgtcatggc 941 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Minus Query: 154 ggcttccggtagatgtcgaacatctc 179 ||||| |||||||||||||||||||| Sbjct: 1155 ggcttgcggtagatgtcgaacatctc 1130
>ref|XM_470786.1| Oryza sativa (japonica cultivar-group), mRNA Length = 857 Score = 60.0 bits (30), Expect = 7e-06 Identities = 39/42 (92%) Strand = Plus / Minus Query: 333 cggctcggactccacggccttgatgaagctgtccgtcatggc 374 ||||||| ||||||| |||||||||||||||| ||||||||| Sbjct: 325 cggctcgcactccaccgccttgatgaagctgtgcgtcatggc 284 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Minus Query: 154 ggcttccggtagatgtcgaacatctc 179 ||||| |||||||||||||||||||| Sbjct: 498 ggcttgcggtagatgtcgaacatctc 473
>gb|AC161269.4| Mus musculus BAC clone RP23-120K16 from chromosome 15, complete sequence Length = 206234 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 ccggggaggaggcggcggccg 270 ||||||||||||||||||||| Sbjct: 77032 ccggggaggaggcggcggccg 77012
>ref|XM_476851.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1367 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 248 gcccggggaggaggcggcggc 268 ||||||||||||||||||||| Sbjct: 214 gcccggggaggaggcggcggc 194
>gb|AC115718.14| Mus musculus chromosome 8, clone RP23-247P3, complete sequence Length = 232751 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 22 tggaccttcattttaattccactga 46 |||| |||||||||||||||||||| Sbjct: 97721 tggatcttcattttaattccactga 97745
>ref|XM_591305.2| PREDICTED: Bos taurus similar to U11/U12 snRNP 48K, transcript variant 1 (LOC513601), mRNA Length = 3558 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 248 gcccggggaggaggcggcggc 268 ||||||||||||||||||||| Sbjct: 142 gcccggggaggaggcggcggc 162
>ref|XM_865407.1| PREDICTED: Bos taurus similar to U11/U12 snRNP 48K, transcript variant 2 (LOC513601), mRNA Length = 1123 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 248 gcccggggaggaggcggcggc 268 ||||||||||||||||||||| Sbjct: 142 gcccggggaggaggcggcggc 162
>ref|XM_875934.1| PREDICTED: Bos taurus similar to U11/U12 snRNP 48K, transcript variant 3 (LOC513601), mRNA Length = 1190 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 248 gcccggggaggaggcggcggc 268 ||||||||||||||||||||| Sbjct: 142 gcccggggaggaggcggcggc 162
>gb|AC121275.20| Mus musculus chromosome 8, clone RP24-234C3, complete sequence Length = 158075 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 22 tggaccttcattttaattccactga 46 |||| |||||||||||||||||||| Sbjct: 5316 tggatcttcattttaattccactga 5292
>gb|AY372817.1| Meleagris gallopavo ryanodine receptor alpha isoform mRNA, partial cds Length = 717 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 250 ccggggaggaggcggcggccg 270 ||||||||||||||||||||| Sbjct: 389 ccggggaggaggcggcggccg 409
>gb|AC008949.9| Homo sapiens chromosome 5 clone CTD-2335O24, complete sequence Length = 163731 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 ccggggaggaggcggcggccg 270 ||||||||||||||||||||| Sbjct: 146640 ccggggaggaggcggcggccg 146620
>gb|AC034240.5| Homo sapiens chromosome 5 clone CTD-2335C11, complete sequence Length = 121245 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 ccggggaggaggcggcggccg 270 ||||||||||||||||||||| Sbjct: 26956 ccggggaggaggcggcggccg 26936
>gb|AC132390.4| Mus musculus BAC clone RP23-453P1 from chromosome 8, complete sequence Length = 200323 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 22 tggaccttcattttaattccactga 46 |||| |||||||||||||||||||| Sbjct: 22133 tggatcttcattttaattccactga 22157
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 248 gcccggggaggaggcggcggc 268 ||||||||||||||||||||| Sbjct: 4219908 gcccggggaggaggcggcggc 4219928
>dbj|AP003800.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1014_E09 Length = 184624 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 248 gcccggggaggaggcggcggc 268 ||||||||||||||||||||| Sbjct: 40962 gcccggggaggaggcggcggc 40982
>dbj|AK073022.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023149P22, full insert sequence Length = 1367 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 248 gcccggggaggaggcggcggc 268 ||||||||||||||||||||| Sbjct: 214 gcccggggaggaggcggcggc 194
>gb|AC150560.5| Mus musculus BAC clone RP23-16I14 from 15, complete sequence Length = 208801 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 ccggggaggaggcggcggccg 270 ||||||||||||||||||||| Sbjct: 181469 ccggggaggaggcggcggccg 181449
>gb|AY107563.1| Zea mays PCO093543 mRNA sequence Length = 995 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Minus Query: 334 ggctcggactccacggccttgatgaagctgtccgtcatggc 374 |||||| | ||||| |||||||||||||||| |||||||| Sbjct: 526 ggctcgcattccaccgccttgatgaagctgtgggtcatggc 486
>gb|AC007842.1|AC007842 Homo sapiens chromosome 19, BAC 331191 (CIT-B-471f3), complete sequence Length = 174009 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 183 agagcagagctggggctcctg 203 ||||||||||||||||||||| Sbjct: 92757 agagcagagctggggctcctg 92737
>emb|AL845438.21| Zebrafish DNA sequence from clone CH211-120G21 in linkage group 10, complete sequence Length = 175059 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 46 agtacagtacaactgaaatgt 66 ||||||||||||||||||||| Sbjct: 100611 agtacagtacaactgaaatgt 100631
>gb|DQ306010.1| Danio rerio odorant receptor (OR109-2) gene, complete cds Length = 1011 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 46 agtacagtacaactgaaatgt 66 ||||||||||||||||||||| Sbjct: 958 agtacagtacaactgaaatgt 978
>ref|XM_512915.1| PREDICTED: Pan troglodytes similar to hypothetical protein FLJ14768 (LOC456307), mRNA Length = 2086 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 cggggaggaggcggcggccg 270 |||||||||||||||||||| Sbjct: 1110 cggggaggaggcggcggccg 1129
>ref|NM_195368.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0003P07.25), mRNA Length = 426 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 gggaggaggcggcggccggc 272 |||||||||||||||||||| Sbjct: 227 gggaggaggcggcggccggc 246
>ref|XM_466159.1| Oryza sativa (japonica cultivar-group), mRNA Length = 693 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 gggaggaggcggcggccggc 272 |||||||||||||||||||| Sbjct: 328 gggaggaggcggcggccggc 309
>gb|AC122766.25| Mus musculus chromosome 3, clone RP24-111F24, complete sequence Length = 145902 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 gagcagagctggggctcctg 203 |||||||||||||||||||| Sbjct: 2115 gagcagagctggggctcctg 2096
>ref|NM_032836.1| Homo sapiens hypothetical protein FLJ14768 (FLJ14768), mRNA Length = 2651 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 cggggaggaggcggcggccg 270 |||||||||||||||||||| Sbjct: 1245 cggggaggaggcggcggccg 1264
>gb|AC093612.18| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0003P07, complete sequence Length = 175116 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 gggaggaggcggcggccggc 272 |||||||||||||||||||| Sbjct: 168454 gggaggaggcggcggccggc 168473
>gb|AC125006.9| Mus musculus chromosome 3, clone RP24-157K20, complete sequence Length = 169078 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 gagcagagctggggctcctg 203 |||||||||||||||||||| Sbjct: 119399 gagcagagctggggctcctg 119380
>gb|AC113006.9| Mus musculus chromosome 16, clone RP23-332O12, complete sequence Length = 195941 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 gcccggggaggaggcggcgg 267 |||||||||||||||||||| Sbjct: 54494 gcccggggaggaggcggcgg 54475
>gb|AC096338.17| Rattus norvegicus X BAC CH230-95I19 (Children's Hospital Oakland Research Institute) complete sequence Length = 236662 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 gagcagagctggggctcctg 203 |||||||||||||||||||| Sbjct: 61065 gagcagagctggggctcctg 61084
>gb|AF370428.1| Homo sapiens PP7302 mRNA, complete cds Length = 4640 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 tccgcccggggaggaggcgg 264 |||||||||||||||||||| Sbjct: 4074 tccgcccggggaggaggcgg 4055
>gb|AC110573.11| Mus musculus chromosome 16, clone RP23-322A15, complete sequence Length = 190173 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 gcccggggaggaggcggcgg 267 |||||||||||||||||||| Sbjct: 7546 gcccggggaggaggcggcgg 7565
>gb|AC099042.9| Oryza sativa chromosome 10 BAC OSJNBa0041L14 genomic sequence, complete sequence Length = 158742 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 gggaggaggcggcggccggc 272 |||||||||||||||||||| Sbjct: 152156 gggaggaggcggcggccggc 152137
>gb|BC019262.1| Homo sapiens Huntingtin interacting protein K, mRNA (cDNA clone MGC:2632 IMAGE:3504222), complete cds Length = 1349 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 tccgcccggggaggaggcgg 264 |||||||||||||||||||| Sbjct: 136 tccgcccggggaggaggcgg 117
>gb|AC096539.2| Homo sapiens chromosome 1 clone RP11-150L22, complete sequence Length = 183307 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 gcccggggaggaggcggcgg 267 |||||||||||||||||||| Sbjct: 123787 gcccggggaggaggcggcgg 123806
>dbj|AK095876.1| Homo sapiens cDNA FLJ38557 fis, clone HCHON2003134, highly similar to Homo sapiens huntingtin interacting protein HYPK mRNA Length = 2072 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 tccgcccggggaggaggcgg 264 |||||||||||||||||||| Sbjct: 1579 tccgcccggggaggaggcgg 1560
>dbj|AK094716.1| Homo sapiens cDNA FLJ37397 fis, clone BRAMY2027461, highly similar to Homo sapiens huntingtin interacting protein HYPK mRNA Length = 2399 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 tccgcccggggaggaggcgg 264 |||||||||||||||||||| Sbjct: 1906 tccgcccggggaggaggcgg 1887
>dbj|AK027674.1| Homo sapiens cDNA FLJ14768 fis, clone NT2RP3004125, moderately similar to Mus musculus zinc finger protein splice variant FIZ1-B (Fiz1) mRNA Length = 2651 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 cggggaggaggcggcggccg 270 |||||||||||||||||||| Sbjct: 1245 cggggaggaggcggcggccg 1264
>dbj|AK023517.1| Homo sapiens cDNA FLJ13455 fis, clone PLACE1003256 Length = 2216 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 gcccggggaggaggcggcgg 267 |||||||||||||||||||| Sbjct: 369 gcccggggaggaggcggcgg 388
>gb|AC113408.2| Homo sapiens chromosome 5 clone RP11-481H5, complete sequence Length = 171961 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 370 atggcgccaatggcagaggaatcgggga 397 |||| ||||||||||||| ||||||||| Sbjct: 141033 atggtgccaatggcagagaaatcgggga 141006
>dbj|AK134904.1| Mus musculus adult male olfactory brain cDNA, RIKEN full-length enriched library, clone:6430513G04 product:hypothetical Glycine-rich region profile/Aldo/keto reductase containing protein, full insert sequence Length = 3825 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 gcccggggaggaggcggcgg 267 |||||||||||||||||||| Sbjct: 81 gcccggggaggaggcggcgg 100
>gb|AC018512.6| Homo sapiens chromosome 15 clone RP11-296A16 map 15q15, complete sequence Length = 171641 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 tccgcccggggaggaggcgg 264 |||||||||||||||||||| Sbjct: 115756 tccgcccggggaggaggcgg 115737
>gb|AC023356.8| Homo sapiens chromosome 15 clone RP11-329C22 map 15q15, complete sequence Length = 181891 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 tccgcccggggaggaggcgg 264 |||||||||||||||||||| Sbjct: 4197 tccgcccggggaggaggcgg 4178
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 46 agtacagtacaactgaaatgtccc 69 ||||||||| |||||||||||||| Sbjct: 21756155 agtacagtaaaactgaaatgtccc 21756178
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 gggaggaggcggcggccggc 272 |||||||||||||||||||| Sbjct: 6450424 gggaggaggcggcggccggc 6450443
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 gggaggaggcggcggccggc 272 |||||||||||||||||||| Sbjct: 20772455 gggaggaggcggcggccggc 20772436
>gb|AC034247.4|AC034247 Homo sapiens chromosome 5 clone RP11-343P16, complete sequence Length = 171482 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 370 atggcgccaatggcagaggaatcgggga 397 |||| ||||||||||||| ||||||||| Sbjct: 4394 atggtgccaatggcagagaaatcgggga 4367
>ref|NM_016400.2| Homo sapiens Huntingtin interacting protein K (HYPK), mRNA Length = 1349 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 tccgcccggggaggaggcgg 264 |||||||||||||||||||| Sbjct: 136 tccgcccggggaggaggcgg 117
>ref|XM_343841.2| PREDICTED: Rattus norvegicus similar to Plexin B3 precursor (Plexin 6) (LOC363517), mRNA Length = 5853 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 gagcagagctggggctcctg 203 |||||||||||||||||||| Sbjct: 5042 gagcagagctggggctcctg 5023
>dbj|AP004775.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0451A10 Length = 137046 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 gggaggaggcggcggccggc 272 |||||||||||||||||||| Sbjct: 123561 gggaggaggcggcggccggc 123542
>dbj|AP004038.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1004_H01 Length = 121377 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 gggaggaggcggcggccggc 272 |||||||||||||||||||| Sbjct: 14916 gggaggaggcggcggccggc 14897
>dbj|AK000438.1| Homo sapiens cDNA FLJ20431 fis, clone KAT03722 Length = 718 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 tccgcccggggaggaggcgg 264 |||||||||||||||||||| Sbjct: 203 tccgcccggggaggaggcgg 184
>gb|AC006427.13|AC006427 Homo sapiens chromosome 4 clone C0201M04, complete sequence Length = 178524 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 aagcttttcacaggagaaaa 153 |||||||||||||||||||| Sbjct: 68021 aagcttttcacaggagaaaa 68040
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 gggaggaggcggcggccggc 272 |||||||||||||||||||| Sbjct: 6452410 gggaggaggcggcggccggc 6452429
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 46 agtacagtacaactgaaatgtccc 69 ||||||||| |||||||||||||| Sbjct: 21684500 agtacagtaaaactgaaatgtccc 21684523
>emb|AL731747.2|CNS08C7W Oryza sativa chromosome 12, . BAC OSJNBa0024C08 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 186030 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 46 agtacagtacaactgaaatgtccc 69 ||||||||| |||||||||||||| Sbjct: 56396 agtacagtaaaactgaaatgtccc 56373
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 246 ccgcccggggaggaggcggcggcc 269 ||||||||| |||||||||||||| Sbjct: 3059489 ccgcccgggcaggaggcggcggcc 3059466 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 gcccggggaggaggcggcgg 267 |||||||||||||||||||| Sbjct: 2319787 gcccggggaggaggcggcgg 2319768 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,374,456 Number of Sequences: 3902068 Number of extensions: 3374456 Number of successful extensions: 72276 Number of sequences better than 10.0: 62 Number of HSP's better than 10.0 without gapping: 62 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71644 Number of HSP's gapped (non-prelim): 632 length of query: 450 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 428 effective length of database: 17,147,199,772 effective search space: 7339001502416 effective search space used: 7339001502416 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
