ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart36d01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF107025.1|AF107025 Triticum aestivum similar to histone H1 mRNA sequence Length = 1082 Score = 408 bits (206), Expect = e-111 Identities = 418/481 (86%), Gaps = 15/481 (3%) Strand = Plus / Minus Query: 8 cataattaattagataaacaatgcactattttgttctcgacaccgtcacatggaccttgc 67 ||||||||||||||||||||||||||||||| ||| |||||||| ||||| ||| ||||| Sbjct: 1049 cataattaattagataaacaatgcactattt-gttttcgacaccatcacaaggatcttgc 991 Query: 68 tacgctnnnnnnnncctcatcacatcaggctgctacggtaatatggacgaccggggacaa 127 |||||| |||| || |||| ||||||||||||| | ||| | ||||||| | Sbjct: 990 tacgctaaaaaa--cctcgacaaatcaagctgctacggtaaaacggaggctcggggacga 933 Query: 128 accctcgccgccgccgtcttcgt--catccacagatacacctccaagggtacgccggccg 185 |||||||||||||||||| |||| || |||||||||||||||||||||||| | | | Sbjct: 932 accctcgccgccgccgtcgtcgtttcacccacagatacacctccaagggtacncggattg 873 Query: 186 agaccagtgcaccacgacccggatataaaa-tttacagtctagaacacagaatcctggac 244 | ||||| ||||| |||||||||| ||||| |||||||||||||||||| |||| ||||| Sbjct: 872 a-accagagcaccccgacccggatgtaaaaatttacagtctagaacacacaatc-tggac 815 Query: 245 taaca---acacagaacatgggaaaactgctaatggaaactcgtt-gcgggaggacgggc 300 || || |||||||||| |||||||||||||||||||||| ||| || ||||||||| Sbjct: 814 taccaccgacacagaacaggggaaaactgctaatggaaactggtttgccggaggacggag 755 Query: 301 tctctacttcttggccttcttggcgggggccttcttggcgggcgtggccttcttcaccgg 360 |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct: 754 gctctacttcttggccttcttggcgggggtcttcttggcgggcgcggccttcttcaccgg 695 Query: 361 cgccgaccgcttggtgggcggcttcctggcggctggcttcttgggggtagcgggtgccgc 420 ||||||||||||||||||||||||||||| ||| | |||||||||||| |||| || || Sbjct: 694 cgccgaccgcttggtgggcggcttcctgggggcggccttcttgggggtggcggcggcggc 635 Query: 421 ---cgccttcttccctggtgcgtccttggcggaggtcttggcggccttggcggggcggcc 477 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 634 gggcgccttcttccctggcgcgtccttggcggaggtcttggcggccttggcggggcggcc 575 Query: 478 c 478 | Sbjct: 574 c 574
>dbj|D87064.1| Triticum aestivum gene for histone H1, complete cds, clone:TH315 Length = 3025 Score = 389 bits (196), Expect = e-105 Identities = 424/495 (85%), Gaps = 24/495 (4%) Strand = Plus / Minus Query: 4 caatcataattaattagataaacaatgcactattttgttctcgacaccg-tcacatggac 62 ||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||| | Sbjct: 2145 caatcataattaattagataaacaatgcactattt-gttttcgacacccatcacatg-at 2088 Query: 63 cttgctacgctnnnnnnnncctcatcacatcaggctgctacggtaatatggacgaccggg 122 ||||||||||| |||| || |||| |||||||||||||| ||| | | ||| Sbjct: 2087 cttgctacgctaaaaaa--cctcgacaaatcaagctgctacggtaatgcggaggccgggg 2030 Query: 123 gacaaaccctcgccgccgcc---gtcttcgtcatc--------cacagatacacctccaa 171 |||||||||||||||||||| ||| |||||||| ||||||||||||||||| Sbjct: 2029 gacaaaccctcgccgccgccgtcgtcgtcgtcatcgtttcacccacagatacacctccaa 1970 Query: 172 gggtacgccggccgagaccagtgcaccacgacccggatataaaatttacagtctagaaca 231 ||||||||||| ||||| ||||| |||||||||| ||||||||||||||||||||| Sbjct: 1969 gggtacgccggattgaaccagcgcaccccgacccggatgtaaaatttacagtctagaaca 1910 Query: 232 cagaatcctggactaaca---acacagaacatgggaaaactgctaatggaaactcgttgc 288 ||||||||||||||| || |||||||||| ||||||||||||| ||| ||| ||||| Sbjct: 1909 cagaatcctggactaccaccgacacagaacaggggaaaactgctacgggagacttgttgc 1850 Query: 289 gggaggacggg--ctctctacttcttggccttcttggcgggggccttcttggcgggcgtg 346 |||||||| | | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1849 gggaggacagagacgctctacttcttggccttcttggcgggggccttcttggcgggcgtg 1790 Query: 347 gccttcttcaccggcgccgaccgcttggtgggcggcttcctggcggctggcttcttgggg 406 ||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||| Sbjct: 1789 gccttcttcaccggcgccgaccgcttggtgggcggcttcctgggggcggccttcttgggg 1730 Query: 407 g---tagcgggtgccgccgccttcttccctggtgcgtccttggcggaggtcttggcggcc 463 | | |||| || | ||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 1729 gtgctggcggcggcgggcgccttcttccctggcgcgtccttggcggaggtcttggcggcc 1670 Query: 464 ttggcggggcggccc 478 ||| |||||||||| Sbjct: 1669 ttgcgggggcggccc 1655
>dbj|D87065.1| Triticum aestivum gene for histone H1, complete cds, clone:TH325 Length = 2541 Score = 285 bits (144), Expect = 7e-74 Identities = 200/217 (92%), Gaps = 5/217 (2%) Strand = Plus / Minus Query: 273 aatggaaactcgttgcgggaggacggg--ctctctacttcttggccttcttggcgggggc 330 |||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||| Sbjct: 1876 aatggaaacttgttgcgggaggacggagacgctctacttcttggccttcttggcgggggc 1817 Query: 331 cttcttggcgggcgtggccttcttcaccggcgccgaccgcttggtgggcggcttcctggc 390 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1816 cttcttggcgggcgtggccttcttcaccggcgccgaccgcttggtgggcggcttcctggg 1757 Query: 391 ggctggcttcttgggggtagcgggtgccgc---cgccttcttccctggtgcgtccttggc 447 ||| | |||||||||||| |||| || || ||||||||||||||| ||||||||||| Sbjct: 1756 ggcggccttcttgggggtggcggcggcggcgggcgccttcttccctggcgcgtccttggc 1697 Query: 448 ggaggtcttggcggccttggcggggcggcccttcggc 484 ||||||||||||||||||||||||||||||| ||||| Sbjct: 1696 ggaggtcttggcggccttggcggggcggcccctcggc 1660 Score = 115 bits (58), Expect = 1e-22 Identities = 86/94 (91%), Gaps = 1/94 (1%) Strand = Plus / Minus Query: 154 ccacagatacacctccaagggtacgccggccgagaccagtgcacc-acgacccggatata 212 ||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||| Sbjct: 1990 ccacagatacacctccaagggtacgccggaatgaaccagagcacccacaacccggatata 1931 Query: 213 aaatttacagtctagaacacagaatcctggacta 246 |||||||||||||||||||||||||||||||||| Sbjct: 1930 aaatttacagtctagaacacagaatcctggacta 1897 Score = 85.7 bits (43), Expect = 1e-13 Identities = 123/148 (83%), Gaps = 4/148 (2%) Strand = Plus / Minus Query: 5 aatcataattaattagataaacaatgcactattttgttctcgacaccgtcacatggacct 64 ||||||||||||||||||||||||||||||| |||||| |||||||| |||| ||| || Sbjct: 2148 aatcataattaattagataaacaatgcacta-tttgttttcgacaccaccacaaggatct 2090 Query: 65 tgctacgctnnnnnnnncctcatcacatcaggctgctacggtaatatggacgaccgggga 124 ||||||||| |||| || |||| |||||||||||||| ||| | | ||||| Sbjct: 2089 tgctacgct--aaaaaacctcgacaaatcaagctgctacggtaatgcggaggccggggga 2032 Query: 125 caaa-ccctcgccgccgccgtcttcgtc 151 |||| ||||||||||||||||| ||||| Sbjct: 2031 caaagccctcgccgccgccgtcgtcgtc 2004
>gb|AF107024.1|AF107024 Triticum aestivum histone H1 WH1B.1 mRNA, complete cds Length = 1114 Score = 137 bits (69), Expect = 4e-29 Identities = 127/144 (88%), Gaps = 3/144 (2%) Strand = Plus / Minus Query: 328 ggccttcttggcgggcgtggccttcttcaccggcgccgaccgcttggtgggcggcttcct 387 ||||||||||||||||| ||||||||||||||||| || | |||||||||||||||||| Sbjct: 787 ggccttcttggcgggcgcggccttcttcaccggcgtggatctcttggtgggcggcttcct 728 Query: 388 ggcggctggcttcttgggggtagcgggtgccgccgccttcttccctggtgcgtccttggc 447 |||||| ||||||||||| | || || |||| || ||||||||||| ||||||||||| Sbjct: 727 ggcggcgggcttcttgggcgccgc-ggcgccg--gcgttcttccctggcgcgtccttggc 671 Query: 448 ggaggtcttggcggccttggcggg 471 ||||||||||| ||||||||||| Sbjct: 670 cgaggtcttggcagccttggcggg 647 Score = 58.0 bits (29), Expect = 3e-05 Identities = 49/55 (89%), Gaps = 3/55 (5%) Strand = Plus / Minus Query: 303 tctacttcttggccttctt---ggcgggggccttcttggcgggcgtggccttctt 354 ||||||||||||||||||| ||||||||||||||| || |||| ||||||||| Sbjct: 833 tctacttcttggccttcttggcggcgggggccttcttcgccggcgcggccttctt 779 Score = 40.1 bits (20), Expect = 6.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 328 ggccttcttggcgggcgtggccttcttcaccggcgc 363 |||||||||||||| | |||||||||| ||||||| Sbjct: 823 ggccttcttggcggcgggggccttcttcgccggcgc 788
>emb|X59872.2|TAHISTH1 T.aestivum L mRNA for histone H1 Length = 1031 Score = 135 bits (68), Expect = 1e-28 Identities = 113/128 (88%) Strand = Plus / Minus Query: 302 ctctacttcttggccttcttggcgggggccttcttggcgggcgtggccttcttcaccggc 361 ||||||||||||||||||||||| | || ||||||||| |||| ||||||||||||||| Sbjct: 785 ctctacttcttggccttcttggccgcgggcttcttggccggcgcggccttcttcaccggg 726 Query: 362 gccgaccgcttggtgggcggcttcctggcggctggcttcttgggggtagcgggtgccgcc 421 | || |||||||||||||||||||| |||||| |||||||| ||||| |||| |||| | Sbjct: 725 gtcgcccgcttggtgggcggcttccgggcggcgggcttcttcggggtcgcggcggccggc 666 Query: 422 gccttctt 429 |||||||| Sbjct: 665 gccttctt 658
>gb|AF107022.1|AF107022 Triticum aestivum histone H1 WH1A.1 mRNA, complete cds Length = 1050 Score = 135 bits (68), Expect = 1e-28 Identities = 113/128 (88%) Strand = Plus / Minus Query: 302 ctctacttcttggccttcttggcgggggccttcttggcgggcgtggccttcttcaccggc 361 ||||||||||||||||||||||| | || ||||||||| |||| ||||||||||||||| Sbjct: 759 ctctacttcttggccttcttggccgcgggcttcttggccggcgcggccttcttcaccggg 700 Query: 362 gccgaccgcttggtgggcggcttcctggcggctggcttcttgggggtagcgggtgccgcc 421 | || |||||||||||||||||||| |||||| |||||||| ||||| |||| |||| | Sbjct: 699 gtcgcccgcttggtgggcggcttccgggcggcgggcttcttcggggtcgcggcggccggc 640 Query: 422 gccttctt 429 |||||||| Sbjct: 639 gccttctt 632
>gb|AF107027.1|AF107027 Triticum aestivum histone H1 WH1A.4 mRNA, complete cds Length = 975 Score = 113 bits (57), Expect = 5e-22 Identities = 113/131 (86%), Gaps = 3/131 (2%) Strand = Plus / Minus Query: 302 ctctacttcttggccttcttggcgggggccttcttggcgggcgtggccttcttcaccggc 361 ||||||||||||||||||||||| | || |||||||||||| | ||||||||||||||| Sbjct: 745 ctctacttcttggccttcttggccgcgggcttcttggcgggggccgccttcttcaccggc 686 Query: 362 gccgaccgcttggtgggcggcttcc---tggcggctggcttcttgggggtagcgggtgcc 418 | || ||||||||||||||||||| |||||| |||||||||||||| |||| ||| Sbjct: 685 gtcgcgcgcttggtgggcggcttccgggcggcggcgggcttcttgggggtcgcggcggcc 626 Query: 419 gccgccttctt 429 | ||||||||| Sbjct: 625 ggcgccttctt 615
>gb|AF107026.1|AF107026 Triticum aestivum histone H1 WH1A.3 mRNA, partial cds Length = 952 Score = 113 bits (57), Expect = 5e-22 Identities = 113/131 (86%), Gaps = 3/131 (2%) Strand = Plus / Minus Query: 302 ctctacttcttggccttcttggcgggggccttcttggcgggcgtggccttcttcaccggc 361 ||||||||||||||||||||||| | || |||||||||||| | ||||||||||||||| Sbjct: 687 ctctacttcttggccttcttggccgcgggcttcttggcgggggccgccttcttcaccggc 628 Query: 362 gccgaccgcttggtgggcggcttcc---tggcggctggcttcttgggggtagcgggtgcc 418 | || ||||||||||||||||||| |||||| |||||||||||||| |||| ||| Sbjct: 627 gtcgcgcgcttggtgggcggcttccgggcggcggcgggcttcttgggggtcgcggcggcc 568 Query: 419 gccgccttctt 429 | ||||||||| Sbjct: 567 ggcgccttctt 557
>gb|AY587552.1| Hordeum vulgare subsp. vulgare GAMYB-binding protein mRNA, complete cds Length = 2275 Score = 105 bits (53), Expect = 1e-19 Identities = 110/128 (85%), Gaps = 2/128 (1%) Strand = Plus / Minus Query: 302 ctctacttcttggccttcttggcgggggccttcttggcgggcgtggccttcttcaccggc 361 |||||||||||||||||||| || | || ||||||||| |||| |||||||||||||| Sbjct: 296 ctctacttcttggccttcttcgccgcgggcttcttggccggcgcagccttcttcaccggg 237 Query: 362 gccgaccgcttggtgggcggcttcctggcggctggcttcttgggggtagcgggtgccgcc 421 | || |||||||||||||| |||||||||| |||||||||||||| |||| |||| | Sbjct: 236 gtcgcccgcttggtgggcgccttcctggcg--aggcttcttgggggttgcggcggccggc 179 Query: 422 gccttctt 429 |||||||| Sbjct: 178 gccttctt 171
>gb|AF107023.1|AF107023 Triticum aestivum histone H1 WH1A.2 mRNA, complete cds Length = 1019 Score = 101 bits (51), Expect = 2e-18 Identities = 93/107 (86%) Strand = Plus / Minus Query: 302 ctctacttcttggccttcttggcgggggccttcttggcgggcgtggccttcttcaccggc 361 ||||||||||||||||||||||| | || ||||||||| || | |||||||||||||||| Sbjct: 751 ctctacttcttggccttcttggccgcgggcttcttggccggagcggccttcttcaccggc 692 Query: 362 gccgaccgcttggtgggcggcttcctggcggctggcttcttgggggt 408 | || || ||||||||||||||||| ||| | |||||||| ||||| Sbjct: 691 gtcgccctcttggtgggcggcttccgggcaacaggcttcttcggggt 645
>gb|BT016422.1| Zea mays clone Contig255 mRNA sequence Length = 1248 Score = 71.9 bits (36), Expect = 2e-09 Identities = 54/60 (90%) Strand = Plus / Minus Query: 418 cgccgccttcttccctggtgcgtccttggcggaggtcttggcggccttggcggggcggcc 477 |||||| |||||||| || | ||||||||| || |||||||||||||||||||||||||| Sbjct: 776 cgccgctttcttcccgggcgtgtccttggctgacgtcttggcggccttggcggggcggcc 717
>gb|AY103607.1| Zea mays PCO078239 mRNA sequence Length = 1228 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Minus Query: 421 cgccttcttccctggtgcgtccttggcggaggtcttggcggccttggcggggcggcc 477 ||||||||||||||| | ||||||||| || ||||| || ||||||||||||||||| Sbjct: 756 cgccttcttccctggcgtgtccttggccgacgtcttcgccgccttggcggggcggcc 700 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 313 ggccttcttggcgggggccttcttggcgg 341 |||||||||||| ||||||||||| |||| Sbjct: 810 ggccttcttggcaggggccttcttcgcgg 782
>gb|BT016684.1| Zea mays clone Contig517 mRNA sequence Length = 1070 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 422 gccttcttccctggtgcgtccttggcggaggtcttggcggccttggcggggcggcc 477 |||||||||||||| | ||||||||| || ||||| || ||||||||||||||||| Sbjct: 752 gccttcttccctggcgtgtccttggccgacgtcttcgccgccttggcggggcggcc 697 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 313 ggccttcttggcgggggccttctt 336 |||||||||||| ||||||||||| Sbjct: 768 ggccttcttggcaggggccttctt 745
>gb|BT018112.1| Zea mays clone EL01N0553G06.c mRNA sequence Length = 1005 Score = 58.0 bits (29), Expect = 3e-05 Identities = 50/57 (87%) Strand = Plus / Minus Query: 421 cgccttcttccctggtgcgtccttggcggaggtcttggcggccttggcggggcggcc 477 ||||||||| ||||| | | ||||||| || |||||||| ||||||||||||||||| Sbjct: 728 cgccttctttcctggcgtggccttggccgacgtcttggccgccttggcggggcggcc 672
>ref|XM_476900.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1174 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Minus Query: 418 cgccgccttcttccctggtgcgtccttggcggaggtcttggcggccttggcggggcggcc 477 |||||||||||| | || | ||||||||| ||||||||||||| |||||| |||||||| Sbjct: 842 cgccgccttcttggcaggcgagtccttggcagaggtcttggcggacttggcagggcggcc 783
>gb|AY576796.1| Actinoplanes phage phiAsp2, complete genome Length = 58638 Score = 56.0 bits (28), Expect = 1e-04 Identities = 28/28 (100%) Strand = Plus / Minus Query: 312 tggccttcttggcgggggccttcttggc 339 |||||||||||||||||||||||||||| Sbjct: 14524 tggccttcttggcgggggccttcttggc 14497
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Minus Query: 418 cgccgccttcttccctggtgcgtccttggcggaggtcttggcggccttggcggggcggcc 477 |||||||||||| | || | ||||||||| ||||||||||||| |||||| |||||||| Sbjct: 4516576 cgccgccttcttggcaggcgagtccttggcagaggtcttggcggacttggcagggcggcc 4516517
>gb|AY204472.1| Myxococcus xanthus clone C1226 adventurous gliding motility protein C, YgbF-like protein, topoisomerase, TolQ-like protein, TolR-like protein, hypothetical proteins, GidA-like protein (gidA), adventurous gliding motility protein U (aglU), kinesin-related protein, integrase/recombinase, ion transport protein, HslV-like protein, HslU-like protein, and N-acetylornithine aminotransferase-like protein genes, complete cds; and hypothetical protein gene, partial cds Length = 25315 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 313 ggccttcttggcgggggccttcttggcgggcg 344 |||||||||||||| ||||||||||||||||| Sbjct: 7158 ggccttcttggcggcggccttcttggcgggcg 7127
>dbj|AP003861.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1046_F10 Length = 118472 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Minus Query: 418 cgccgccttcttccctggtgcgtccttggcggaggtcttggcggccttggcggggcggcc 477 |||||||||||| | || | ||||||||| ||||||||||||| |||||| |||||||| Sbjct: 95295 cgccgccttcttggcaggcgagtccttggcagaggtcttggcggacttggcagggcggcc 95236
>dbj|AK106132.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-F12, full insert sequence Length = 1174 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Minus Query: 418 cgccgccttcttccctggtgcgtccttggcggaggtcttggcggccttggcggggcggcc 477 |||||||||||| | || | ||||||||| ||||||||||||| |||||| |||||||| Sbjct: 842 cgccgccttcttggcaggcgagtccttggcagaggtcttggcggacttggcagggcggcc 783
>dbj|AK102642.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033100F04, full insert sequence Length = 1175 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Minus Query: 418 cgccgccttcttccctggtgcgtccttggcggaggtcttggcggccttggcggggcggcc 477 |||||||||||| | || | ||||||||| ||||||||||||| |||||| |||||||| Sbjct: 843 cgccgccttcttggcaggcgagtccttggcagaggtcttggcggacttggcagggcggcc 784
>dbj|AK099050.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013148D20, full insert sequence Length = 1175 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Minus Query: 418 cgccgccttcttccctggtgcgtccttggcggaggtcttggcggccttggcggggcggcc 477 |||||||||||| | || | ||||||||| ||||||||||||| |||||| |||||||| Sbjct: 843 cgccgccttcttggcaggcgagtccttggcagaggtcttggcggacttggcagggcggcc 784
>dbj|AK059544.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-F03, full insert sequence Length = 1177 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Minus Query: 418 cgccgccttcttccctggtgcgtccttggcggaggtcttggcggccttggcggggcggcc 477 |||||||||||| | || | ||||||||| ||||||||||||| |||||| |||||||| Sbjct: 845 cgccgccttcttggcaggcgagtccttggcagaggtcttggcggacttggcagggcggcc 786
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 54.0 bits (27), Expect = 4e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 313 ggccttcttggcgggggccttcttggc 339 ||||||||||||||||||||||||||| Sbjct: 3443532 ggccttcttggcgggggccttcttggc 3443506
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 313 ggccttcttggcgggggccttcttggcgg 341 |||||||||||| |||||||||||||||| Sbjct: 3976677 ggccttcttggccggggccttcttggcgg 3976649 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 314 gccttcttggcgggggccttcttggcggg 342 ||||||||||| | ||||||||||||||| Sbjct: 3976721 gccttcttggccgcggccttcttggcggg 3976693 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 313 ggccttcttggcgggggccttctt 336 ||||||||||||||| |||||||| Sbjct: 3976707 ggccttcttggcgggtgccttctt 3976684
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Plus Query: 314 gccttcttggcgggggccttcttggcggg 342 |||||||| |||||||||||||||||||| Sbjct: 189353 gccttcttcgcgggggccttcttggcggg 189381 Score = 48.1 bits (24), Expect = 0.027 Identities = 27/28 (96%) Strand = Plus / Plus Query: 314 gccttcttggcgggggccttcttggcgg 341 |||||||||||||| ||||||||||||| Sbjct: 3364642 gccttcttggcgggcgccttcttggcgg 3364669 Score = 48.1 bits (24), Expect = 0.027 Identities = 30/32 (93%) Strand = Plus / Plus Query: 313 ggccttcttggcgggggccttcttggcgggcg 344 ||||||||||||||| || ||||||||||||| Sbjct: 189367 ggccttcttggcgggtgctttcttggcgggcg 189398 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 313 ggccttcttggcgggggccttcttggc 339 |||||||||||||| |||||||||||| Sbjct: 3364596 ggccttcttggcggcggccttcttggc 3364622 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Plus Query: 314 gccttcttggcgggggccttcttggcgggcg 344 ||||||||||||| || |||||||||||||| Sbjct: 898313 gccttcttggcggcggtcttcttggcgggcg 898343 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 314 gccttcttggcgggggccttcttggc 339 |||||||||||||| ||||||||||| Sbjct: 4641457 gccttcttggcgggtgccttcttggc 4641432 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Plus Query: 314 gccttcttggcgggggccttcttggc 339 |||||||||||||| ||||||||||| Sbjct: 898268 gccttcttggcgggcgccttcttggc 898293 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 315 ccttcttggcgggggccttcttggcggg 342 |||||||||| || |||||||||||||| Sbjct: 4429070 ccttcttggccggcgccttcttggcggg 4429043 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 gccttcttggcgggggcctt 333 |||||||||||||||||||| Sbjct: 4429056 gccttcttggcgggggcctt 4429037 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 314 gccttcttggcgggggccttcttggcgg 341 |||||||| || |||||||||||||||| Sbjct: 3364582 gccttcttcgccggggccttcttggcgg 3364609
>emb|AL939116.1|SCO939116 Streptomyces coelicolor A3(2) complete genome; segment 13/29 Length = 293050 Score = 48.1 bits (24), Expect = 0.027 Identities = 27/28 (96%) Strand = Plus / Plus Query: 314 gccttcttggcgggggccttcttggcgg 341 ||||||||||| |||||||||||||||| Sbjct: 290210 gccttcttggccggggccttcttggcgg 290237
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 48.1 bits (24), Expect = 0.027 Identities = 24/24 (100%) Strand = Plus / Plus Query: 316 cttcttggcgggggccttcttggc 339 |||||||||||||||||||||||| Sbjct: 2718525 cttcttggcgggggccttcttggc 2718548 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 306 acttcttggccttcttggcgg 326 ||||||||||||||||||||| Sbjct: 2718368 acttcttggccttcttggcgg 2718388 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 377 ggcggcttcctggcggctggcttc 400 |||| ||||||||||||||||||| Sbjct: 1468170 ggcgccttcctggcggctggcttc 1468147
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 48.1 bits (24), Expect = 0.027 Identities = 24/24 (100%) Strand = Plus / Plus Query: 316 cttcttggcgggggccttcttggc 339 |||||||||||||||||||||||| Sbjct: 3289700 cttcttggcgggggccttcttggc 3289723 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 316 cttcttggcgggggccttcttgg 338 ||||||||||||||||||||||| Sbjct: 5791191 cttcttggcgggggccttcttgg 5791169
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 48.1 bits (24), Expect = 0.027 Identities = 24/24 (100%) Strand = Plus / Plus Query: 313 ggccttcttggcgggggccttctt 336 |||||||||||||||||||||||| Sbjct: 2693695 ggccttcttggcgggggccttctt 2693718
>emb|X57077.1|ZMH1HIS Maize H1 mRNA for H1 histone Length = 1075 Score = 48.1 bits (24), Expect = 0.027 Identities = 42/48 (87%) Strand = Plus / Minus Query: 422 gccttcttccctggtgcgtccttggcggaggtcttggcggccttggcg 469 |||||||||||||| | ||||||||| || ||||| || ||||||||| Sbjct: 681 gccttcttccctggcgtgtccttggccgacgtcttcgccgccttggcg 634 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 313 ggccttcttggcgggggccttctt 336 |||||||||||| ||||||||||| Sbjct: 697 ggccttcttggcaggggccttctt 674
>gb|U16726.1|CRU16726 Chlamydomonas reinhardtii histone H1 (ch1), histone H2A (ch2a-IV), and histone H2B (ch2b-IV) genes, complete cds Length = 4502 Score = 48.1 bits (24), Expect = 0.027 Identities = 33/36 (91%) Strand = Plus / Minus Query: 313 ggccttcttggcgggggccttcttggcgggcgtggc 348 ||||||||||| ||||| ||||||||||||| |||| Sbjct: 1238 ggccttcttggtgggggtcttcttggcgggcttggc 1203 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 cttcttggccttcttggcgg 326 |||||||||||||||||||| Sbjct: 3867 cttcttggccttcttggcgg 3848
>gb|AF461814.1| Zea mays histone H1-like protein (hon102) mRNA, complete cds Length = 991 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 441 ccttggcggaggtcttggcggccttgg 467 |||||||||||||||||||| |||||| Sbjct: 634 ccttggcggaggtcttggcgaccttgg 608
>gb|AC167561.3| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940117D9, complete sequence Length = 143368 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Minus Query: 314 gccttcttggcgggggccttcttggcgggcg 344 ||||||||||||| || |||||||||||||| Sbjct: 44765 gccttcttggcggcgggcttcttggcgggcg 44735 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 316 cttcttggcgggggccttcttggcgggc 343 |||||||||||| |||||||| |||||| Sbjct: 44748 cttcttggcgggcgccttcttcgcgggc 44721
>gb|BT016467.1| Zea mays clone Contig300 mRNA sequence Length = 1100 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 441 ccttggcggaggtcttggcggccttgg 467 |||||||||||||||||||| |||||| Sbjct: 672 ccttggcggaggtcttggcgaccttgg 646
>gb|BT018031.1| Zea mays clone EL01N0530C09.c mRNA sequence Length = 1299 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 441 ccttggcggaggtcttggcggccttgg 467 |||||||||||||||||||| |||||| Sbjct: 866 ccttggcggaggtcttggcgaccttgg 840
>gb|AY993941.1| Microbacterium arborescens strain SE 14 cosmid MAS10D5, complete sequence Length = 33203 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 314 gccttcttggcgggggccttctt 336 ||||||||||||||||||||||| Sbjct: 22189 gccttcttggcgggggccttctt 22211 Score = 40.1 bits (20), Expect = 6.5 Identities = 40/46 (86%), Gaps = 3/46 (6%) Strand = Plus / Plus Query: 316 cttcttggcgggggccttcttggcgggcgtggccttcttcaccggc 361 ||||||||| || |||||||||||||| |||||||||| ||||| Sbjct: 22176 cttcttggccggagccttcttggcggg---ggccttcttcgccggc 22218
>gb|DQ066883.1| Mycobacterium smegmatis strain mc2-155 histone-like protein (hlp) gene, complete cds Length = 647 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 315 ccttcttggcgggggccttcttggcgg 341 |||||||||| |||||||||||||||| Sbjct: 629 ccttcttggccggggccttcttggcgg 603 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 313 ggccttcttggcgggggccttcttggc 339 |||||||||||||| |||||||||||| Sbjct: 616 ggccttcttggcggcggccttcttggc 590 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 313 ggccttcttggcgggggccttcttggcgg 341 |||||||||||| || ||||||||||||| Sbjct: 382 ggccttcttggccggtgccttcttggcgg 354 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 313 ggccttcttggcgggggccttctt 336 |||||||||||| ||||||||||| Sbjct: 439 ggccttcttggccggggccttctt 416 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 316 cttcttggcgggggccttcttggc 339 ||||||||||| |||||||||||| Sbjct: 394 cttcttggcggcggccttcttggc 371
>ref|NM_214555.1| Strongylocentrotus purpuratus late histone H1-gamma (LOC373350), mRNA Length = 654 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Minus Query: 307 cttcttggccttcttggcgggggccttcttg 337 |||||||||||||||||||| || ||||||| Sbjct: 477 cttcttggccttcttggcggcgggcttcttg 447
>gb|AY103883.1| Zea mays PCO072547 mRNA sequence Length = 1156 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 441 ccttggcggaggtcttggcggccttgg 467 |||||||||||||||||||| |||||| Sbjct: 680 ccttggcggaggtcttggcgaccttgg 654
>gb|AF068138.1|AF068138 Mycobacterium smegmatis histone-like protein (hlp) gene, complete cds Length = 900 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 315 ccttcttggcgggggccttcttggcgg 341 |||||||||| |||||||||||||||| Sbjct: 824 ccttcttggccggggccttcttggcgg 798 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 313 ggccttcttggcgggggccttcttggc 339 |||||||||||||| |||||||||||| Sbjct: 811 ggccttcttggcggcggccttcttggc 785 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 313 ggccttcttggcgggggccttcttggcgg 341 |||||||||||| || ||||||||||||| Sbjct: 577 ggccttcttggccggtgccttcttggcgg 549 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 313 ggccttcttggcgggggccttctt 336 |||||||||||| ||||||||||| Sbjct: 634 ggccttcttggccggggccttctt 611 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 316 cttcttggcgggggccttcttggc 339 ||||||||||| |||||||||||| Sbjct: 589 cttcttggcggcggccttcttggc 566
>gb|M16033.1|SUSHISHA1G Sea urchin (S.purpuratus) late histone H1-gamma gene, complete cds Length = 1182 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Minus Query: 307 cttcttggccttcttggcgggggccttcttg 337 |||||||||||||||||||| || ||||||| Sbjct: 917 cttcttggccttcttggcggcgggcttcttg 887
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 319 cttggcgggggccttcttggcgggcg 344 ||||||||| |||||||||||||||| Sbjct: 806432 cttggcgggcgccttcttggcgggcg 806407 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 321 tggcgggggccttcttggcgggcg 344 ||||||| |||||||||||||||| Sbjct: 806373 tggcgggtgccttcttggcgggcg 806350
>gb|AY628703.1| Streptomyces ansochromogenes principal sigma factor gene, complete cds Length = 2120 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 316 cttcttggcgggggccttcttggcgg 341 ||||||||||| |||||||||||||| Sbjct: 841 cttcttggcggcggccttcttggcgg 816
>ref|XM_603394.2| PREDICTED: Bos taurus similar to bromodomain containing protein 3 (LOC525051), mRNA Length = 2994 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 311 ttggccttcttggcgggggccttctt 336 ||||||||||||||||| |||||||| Sbjct: 1610 ttggccttcttggcgggcgccttctt 1585
>emb|CR376731.13| Zebrafish DNA sequence from clone DKEY-117K10 in linkage group 8, complete sequence Length = 130762 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Plus Query: 11 aattaattagataaacaatgcactat 36 ||||||||||| |||||||||||||| Sbjct: 43884 aattaattagaaaaacaatgcactat 43909
>emb|Y13228.1|MBS10OPER Mycobacterium bovis BCG DNA for ribosomal S10 operon Length = 5962 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 319 cttggcgggggccttcttggcgggcg 344 ||||||||| |||||||||||||||| Sbjct: 4025 cttggcgggcgccttcttggcgggcg 4000 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 321 tggcgggggccttcttggcgggcg 344 ||||||| |||||||||||||||| Sbjct: 3966 tggcgggtgccttcttggcgggcg 3943
>emb|BX842574.1| Mycobacterium tuberculosis H37Rv complete genome; segment 3/13 Length = 349564 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 319 cttggcgggggccttcttggcgggcg 344 ||||||||| |||||||||||||||| Sbjct: 119970 cttggcgggcgccttcttggcgggcg 119945 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 321 tggcgggggccttcttggcgggcg 344 ||||||| |||||||||||||||| Sbjct: 119911 tggcgggtgccttcttggcgggcg 119888
>emb|BX248336.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 3/14 Length = 320050 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 319 cttggcgggggccttcttggcgggcg 344 ||||||||| |||||||||||||||| Sbjct: 139065 cttggcgggcgccttcttggcgggcg 139040 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 321 tggcgggggccttcttggcgggcg 344 ||||||| |||||||||||||||| Sbjct: 139006 tggcgggtgccttcttggcgggcg 138983
>emb|AL939124.1|SCO939124 Streptomyces coelicolor A3(2) complete genome; segment 21/29 Length = 308050 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 316 cttcttggcgggggccttcttggcgg 341 ||||||||| |||||||||||||||| Sbjct: 74301 cttcttggccggggccttcttggcgg 74276 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 312 tggccttcttggcgggggccttcttg 337 ||||||||||||||| |||||||||| Sbjct: 74083 tggccttcttggcggcggccttcttg 74058 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 314 gccttcttggcgggggccttcttggcgg 341 |||||||| ||||| ||||||||||||| Sbjct: 74273 gccttcttcgcgggagccttcttggcgg 74246
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 130 cctcgccgccgccgtcttcgtc 151 |||||||||||||||||||||| Sbjct: 20292474 cctcgccgccgccgtcttcgtc 20292495
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 44.1 bits (22), Expect = 0.42 Identities = 34/38 (89%) Strand = Plus / Plus Query: 314 gccttcttggcgggggccttcttggcgggcgtggcctt 351 ||||||||||| | ||||||||| |||||| ||||||| Sbjct: 883368 gccttcttggccgcggccttcttcgcgggcttggcctt 883405 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 tcttcaccggcgccgaccgc 370 |||||||||||||||||||| Sbjct: 2924610 tcttcaccggcgccgaccgc 2924629 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 tcttcaccggcgccgaccgc 370 |||||||||||||||||||| Sbjct: 274435 tcttcaccggcgccgaccgc 274416
>dbj|AP005681.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1439_F07 Length = 153743 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 130 cctcgccgccgccgtcttcgtc 151 |||||||||||||||||||||| Sbjct: 71601 cctcgccgccgccgtcttcgtc 71622
>dbj|AK106545.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-F03, full insert sequence Length = 1756 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 130 cctcgccgccgccgtcttcgtc 151 |||||||||||||||||||||| Sbjct: 1155 cctcgccgccgccgtcttcgtc 1134
>dbj|AK106525.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-107-D11, full insert sequence Length = 1422 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 130 cctcgccgccgccgtcttcgtc 151 |||||||||||||||||||||| Sbjct: 1157 cctcgccgccgccgtcttcgtc 1136
>dbj|AK105409.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-F08, full insert sequence Length = 1475 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 130 cctcgccgccgccgtcttcgtc 151 |||||||||||||||||||||| Sbjct: 915 cctcgccgccgccgtcttcgtc 894
>emb|AJ330315.1|HSA330315 Homo sapiens genomic sequence surrounding NotI site, clone HSJ6P-G4RS Length = 749 Score = 44.1 bits (22), Expect = 0.42 Identities = 48/56 (85%), Gaps = 3/56 (5%) Strand = Plus / Minus Query: 313 ggccttcttggcgggg---gccttcttggcgggcgtggccttcttcaccggcgccg 365 |||||||||||| ||| |||||||| ||||||| ||||||||| ||||||||| Sbjct: 416 ggccttcttggccggggctgccttcttcgcgggcgcggccttcttggccggcgccg 361
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 44.1 bits (22), Expect = 0.42 Identities = 37/42 (88%) Strand = Plus / Minus Query: 314 gccttcttggcgggggccttcttggcgggcgtggccttcttc 355 ||||||||||||| |||||||| || |||| |||||||||| Sbjct: 1303773 gccttcttggcggcagccttcttcgccggcgcggccttcttc 1303732
>gb|AD000005.1|MSGY42 Mycobacterium tuberculosis sequence from clone y42 Length = 36526 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Plus Query: 319 cttggcgggggccttcttggcgggcg 344 ||||||||| |||||||||||||||| Sbjct: 15962 cttggcgggcgccttcttggcgggcg 15987 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 321 tggcgggggccttcttggcgggcg 344 ||||||| |||||||||||||||| Sbjct: 16021 tggcgggtgccttcttggcgggcg 16044
>dbj|AB032557.1| Streptomyces lividans hup2 gene for histone-like protein, complete cds Length = 970 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 316 cttcttggcgggggccttcttggcgg 341 ||||||||| |||||||||||||||| Sbjct: 877 cttcttggccggggccttcttggcgg 852 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 312 tggccttcttggcgggggccttcttg 337 ||||||||||||||| |||||||||| Sbjct: 659 tggccttcttggcggcggccttcttg 634 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 314 gccttcttggcgggggccttcttggcgg 341 |||||||| ||||| ||||||||||||| Sbjct: 849 gccttcttcgcgggagccttcttggcgg 822
>gb|AY785296.1| Caenorhabditis remanei H1 histone isoform H1.1 mRNA, partial cds Length = 587 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 380 ggcttcctggcggctggcttcttgg 404 |||||| |||||||||||||||||| Sbjct: 350 ggcttcttggcggctggcttcttgg 326
>gb|AC183919.2| Pan troglodytes BAC clone CH251-691O9 from chromosome 7, complete sequence Length = 188947 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 128 accctcgccgccgccgtcttc 148 ||||||||||||||||||||| Sbjct: 169708 accctcgccgccgccgtcttc 169728
>ref|NM_004227.3| Homo sapiens pleckstrin homology, Sec7 and coiled-coil domains 3 (PSCD3), mRNA Length = 4482 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 128 accctcgccgccgccgtcttc 148 ||||||||||||||||||||| Sbjct: 131 accctcgccgccgccgtcttc 111
>gb|AC009412.6| Homo sapiens BAC clone RP11-425P5 from 7, complete sequence Length = 212827 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 128 accctcgccgccgccgtcttc 148 ||||||||||||||||||||| Sbjct: 44651 accctcgccgccgccgtcttc 44671
>gb|BC028717.1| Homo sapiens pleckstrin homology, Sec7 and coiled-coil domains 3, mRNA (cDNA clone MGC:33020 IMAGE:4811560), complete cds Length = 4562 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 128 accctcgccgccgccgtcttc 148 ||||||||||||||||||||| Sbjct: 167 accctcgccgccgccgtcttc 147
>ref|XM_754536.1| Ustilago maydis 521 hypothetical protein (UM03482.1) partial mRNA Length = 1104 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 313 ggccttcttggcgggggccttcttggcgg 341 ||||||||||| || |||||||||||||| Sbjct: 51 ggccttcttggtggcggccttcttggcgg 23
>ref|XM_853362.1| PREDICTED: Canis familiaris similar to bromodomain containing 3, transcript variant 12 (LOC480682), mRNA Length = 3024 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 312 tggccttcttggcgggggccttctt 336 |||||||||||||||| |||||||| Sbjct: 1779 tggccttcttggcgggagccttctt 1755
>ref|XM_853324.1| PREDICTED: Canis familiaris similar to bromodomain containing 3, transcript variant 11 (LOC480682), mRNA Length = 3042 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 312 tggccttcttggcgggggccttctt 336 |||||||||||||||| |||||||| Sbjct: 1779 tggccttcttggcgggagccttctt 1755
>ref|XM_853284.1| PREDICTED: Canis familiaris similar to bromodomain containing 3, transcript variant 10 (LOC480682), mRNA Length = 3030 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 312 tggccttcttggcgggggccttctt 336 |||||||||||||||| |||||||| Sbjct: 1740 tggccttcttggcgggagccttctt 1716
>ref|XM_537803.2| PREDICTED: Canis familiaris similar to bromodomain containing 3, transcript variant 1 (LOC480682), mRNA Length = 3030 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 312 tggccttcttggcgggggccttctt 336 |||||||||||||||| |||||||| Sbjct: 1740 tggccttcttggcgggagccttctt 1716
>ref|XM_853206.1| PREDICTED: Canis familiaris similar to bromodomain containing 3, transcript variant 9 (LOC480682), mRNA Length = 3039 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 312 tggccttcttggcgggggccttctt 336 |||||||||||||||| |||||||| Sbjct: 1740 tggccttcttggcgggagccttctt 1716
>ref|XM_853167.1| PREDICTED: Canis familiaris similar to bromodomain containing 3, transcript variant 8 (LOC480682), mRNA Length = 3051 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 312 tggccttcttggcgggggccttctt 336 |||||||||||||||| |||||||| Sbjct: 1794 tggccttcttggcgggagccttctt 1770
>ref|XM_853045.1| PREDICTED: Canis familiaris similar to bromodomain containing 3, transcript variant 6 (LOC480682), mRNA Length = 2985 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 312 tggccttcttggcgggggccttctt 336 |||||||||||||||| |||||||| Sbjct: 1743 tggccttcttggcgggagccttctt 1719
>ref|XM_852961.1| PREDICTED: Canis familiaris similar to bromodomain containing 3, transcript variant 4 (LOC480682), mRNA Length = 3072 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 312 tggccttcttggcgggggccttctt 336 |||||||||||||||| |||||||| Sbjct: 1782 tggccttcttggcgggagccttctt 1758
>ref|XM_852921.1| PREDICTED: Canis familiaris similar to bromodomain containing 3, transcript variant 3 (LOC480682), mRNA Length = 3021 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 312 tggccttcttggcgggggccttctt 336 |||||||||||||||| |||||||| Sbjct: 1779 tggccttcttggcgggagccttctt 1755
>emb|X52983.1|SCCSB1 Streptomyces coelicolor hrdB gene for principal sigma factor Length = 2044 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 316 cttcttggcgggggccttcttggcgggcg 344 ||||||||| | ||||||||||||||||| Sbjct: 747 cttcttggccgcggccttcttggcgggcg 719
>emb|AJ005197.1|HSAJ5197 Homo sapiens mRNA for guanine nucleotide exchange factor GRP1, complete cds Length = 1340 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 128 accctcgccgccgccgtcttc 148 ||||||||||||||||||||| Sbjct: 102 accctcgccgccgccgtcttc 82
>emb|AJ308422.1|RFA308422 Rhodococcus fascians pgk gene for polyphosphate glucokinase and rofA gene for RNA polymerase sigma 70 Length = 2794 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 313 ggccttcttggcgggggccttcttggcgg 341 |||||||||||| || ||||||||||||| Sbjct: 1224 ggccttcttggccggtgccttcttggcgg 1196
>emb|AJ223957.1|HSA223957 Homo sapiens mRNA for ARNO3 protein Length = 1893 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 128 accctcgccgccgccgtcttc 148 ||||||||||||||||||||| Sbjct: 52 accctcgccgccgccgtcttc 32
>gb|AE012161.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 69 of 460 of the complete genome Length = 10339 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 312 tggccttcttggcgggggccttctt 336 ||||||||||||||| ||||||||| Sbjct: 8227 tggccttcttggcggtggccttctt 8251
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Plus Query: 316 cttcttggcgggggccttcttggcgggcgtggc 348 ||||||||| || ||||||||||||||| |||| Sbjct: 3275604 cttcttggccggagccttcttggcgggcttggc 3275636
>gb|AY129335.1| Mycobacteriophage Corndog, complete genome Length = 69777 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 312 tggccttcttggcgggggccttctt 336 |||||||||| |||||||||||||| Sbjct: 52855 tggccttcttagcgggggccttctt 52879
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 312 tggccttcttggcgggggccttctt 336 ||||||||||||||| ||||||||| Sbjct: 4277360 tggccttcttggcggtggccttctt 4277336
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 317 ttcttggcgggggccttcttggcgg 341 ||||||||||| ||||||||||||| Sbjct: 258158 ttcttggcgggcgccttcttggcgg 258134
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Plus Query: 314 gccttcttggcgggggccttcttggcgggcgtggccttctt 354 ||||||||||| | ||||||||| |||| || ||||||||| Sbjct: 3003491 gccttcttggcagcggccttcttcgcggccggggccttctt 3003531
>dbj|AK062828.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-107-G02, full insert sequence Length = 514 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 305 tacttcttggccttcttggcgggggcctt 333 ||||||||| |||||||||||| |||||| Sbjct: 472 tacttcttgtccttcttggcggcggcctt 444
>gb|L41172.1|ESOTRAN Esox lucius Tc1-like transposon DNA Length = 1623 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 151 catccacagatacacctccaa 171 ||||||||||||||||||||| Sbjct: 340 catccacagatacacctccaa 320
>dbj|AB042040.1| Pennahia argentata mRNA for myosin light chain 1, complete cds Length = 1165 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 313 ggccttcttggcgggggcctt 333 ||||||||||||||||||||| Sbjct: 115 ggccttcttggcgggggcctt 95
>gb|AY365053.1| Ralstonia eutropha JMP134 plasmid pJP4, complete sequence Length = 87688 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 gtcttggcggccttggcggg 471 |||||||||||||||||||| Sbjct: 43677 gtcttggcggccttggcggg 43658
>ref|NM_185048.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1371 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 313 ggccttcttggcgggggccttctt 336 ||||||||||||||| |||||||| Sbjct: 916 ggccttcttggcgggcgccttctt 893
>ref|XM_513924.1| PREDICTED: Pan troglodytes LOC457436 (LOC457436), mRNA Length = 691 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 cactattttgttctcgacac 50 |||||||||||||||||||| Sbjct: 313 cactattttgttctcgacac 294
>ref|NM_003037.1| Homo sapiens signaling lymphocytic activation molecule family member 1 (SLAMF1), mRNA Length = 1789 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 cactattttgttctcgacac 50 |||||||||||||||||||| Sbjct: 370 cactattttgttctcgacac 351
>gb|AC161181.3| Mus musculus chromosome 3, clone RP23-10I23, complete sequence Length = 218083 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 2 atcaatcataattaattagataaa 25 ||||||||||||||||||| |||| Sbjct: 41132 atcaatcataattaattagttaaa 41155
>gb|DQ059383.1| Mycobacterium smegmatis HBHA-like protein gene, complete cds Length = 810 Score = 40.1 bits (20), Expect = 6.5 Identities = 40/46 (86%), Gaps = 3/46 (6%) Strand = Plus / Minus Query: 312 tggccttcttggcggg---ggccttcttggcgggcgtggccttctt 354 ||||||||||||| || ||||||||||||||| | ||||||||| Sbjct: 646 tggccttcttggccggagcggccttcttggcgggggcggccttctt 601
>ref|XM_364840.1| Magnaporthe grisea 70-15 hypothetical protein (MG09685.4) partial mRNA Length = 894 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 136 cgccgccgtcttcgtcatccacag 159 |||||||| ||||||||||||||| Sbjct: 390 cgccgccggcttcgtcatccacag 413
>gb|AC175831.3| Mus musculus BAC clone RP24-285G1 from chromosome 3, complete sequence Length = 171981 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 ctacttcttggccttcttgg 323 |||||||||||||||||||| Sbjct: 126724 ctacttcttggccttcttgg 126743
>gb|DQ493952.1| Magnaporthe grisea 70-15 clone 41N21 telomere region, partial sequence Length = 43132 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 136 cgccgccgtcttcgtcatccacag 159 |||||||| ||||||||||||||| Sbjct: 12421 cgccgccggcttcgtcatccacag 12398
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 416 gccgccgccttcttccctggtgcg 439 |||||||||||||||| ||||||| Sbjct: 5300120 gccgccgccttcttccatggtgcg 5300143
>ref|XM_654234.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN1722.2), mRNA Length = 1521 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 388 ggcggctggcttcttggggg 407 |||||||||||||||||||| Sbjct: 1012 ggcggctggcttcttggggg 1031
>ref|NM_022466.2| Homo sapiens zinc finger protein, subfamily 1A, 5 (ZNFN1A5), mRNA Length = 2916 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 cgccgccgccgtcttcgtca 152 |||||||||||||||||||| Sbjct: 61 cgccgccgccgtcttcgtca 42
>gb|AC103649.8| Mus musculus chromosome 3, clone RP24-359A15, complete sequence Length = 184404 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 2 atcaatcataattaattagataaa 25 ||||||||||||||||||| |||| Sbjct: 64919 atcaatcataattaattagttaaa 64942
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 313 ggccttcttggcgggggccttctt 336 ||||||||||||||| |||||||| Sbjct: 33001582 ggccttcttggcgggcgccttctt 33001559 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 cctcgccgccgccgtcttcg 149 |||||||||||||||||||| Sbjct: 12081097 cctcgccgccgccgtcttcg 12081078
>ref|XM_535876.2| PREDICTED: Canis familiaris similar to Coagulation factor XIII A chain precursor (Coagulation factor XIIIa) (Protein-glutamine gamma-glutamyltransferase A chain) (Transglutaminase A chain), transcript variant 1 (LOC478711), mRNA Length = 2583 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 300 ctctctacttcttggccttcttgg 323 |||||| ||||||||||||||||| Sbjct: 1548 ctctcttcttcttggccttcttgg 1525
>ref|XM_852054.1| PREDICTED: Canis familiaris similar to Coagulation factor XIII A chain precursor (Coagulation factor XIIIa) (Protein-glutamine gamma-glutamyltransferase A chain) (Transglutaminase A chain), transcript variant 2 (LOC478711), mRNA Length = 2580 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 300 ctctctacttcttggccttcttgg 323 |||||| ||||||||||||||||| Sbjct: 1545 ctctcttcttcttggccttcttgg 1522
>ref|XM_980795.1| PREDICTED: Mus musculus cDNA sequence BC030336, transcript variant 2 (BC030336), mRNA Length = 4716 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 actaacaacacagaacatgg 262 |||||||||||||||||||| Sbjct: 3377 actaacaacacagaacatgg 3358
>ref|XM_133786.9| PREDICTED: Mus musculus cDNA sequence BC030336, transcript variant 1 (BC030336), mRNA Length = 4716 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 actaacaacacagaacatgg 262 |||||||||||||||||||| Sbjct: 3377 actaacaacacagaacatgg 3358
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 ccttcttggcgggcgtggcc 349 |||||||||||||||||||| Sbjct: 808892 ccttcttggcgggcgtggcc 808911
>gb|AC122214.4| Mus musculus BAC clone RP23-104J10 from chromosome 7, complete sequence Length = 176054 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 actaacaacacagaacatgg 262 |||||||||||||||||||| Sbjct: 42551 actaacaacacagaacatgg 42532
>gb|AC122044.3| Mus musculus BAC clone RP24-449D16 from chromosome 3, complete sequence Length = 123678 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 ctacttcttggccttcttgg 323 |||||||||||||||||||| Sbjct: 33747 ctacttcttggccttcttgg 33766
>gb|BC012602.1| Homo sapiens signaling lymphocytic activation molecule family member 1, mRNA (cDNA clone IMAGE:4296969), complete cds Length = 1024 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 cactattttgttctcgacac 50 |||||||||||||||||||| Sbjct: 590 cactattttgttctcgacac 571
>emb|BX640404.2| Chicken DNA sequence from clone WAG-36O23, complete sequence Length = 136520 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 acagaacatgggaaaactgc 271 |||||||||||||||||||| Sbjct: 64542 acagaacatgggaaaactgc 64523
>gb|AC099930.11| Mus musculus chromosome 7, clone RP23-17C12, complete sequence Length = 224617 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 actaacaacacagaacatgg 262 |||||||||||||||||||| Sbjct: 216420 actaacaacacagaacatgg 216401
>gb|AY954299.1| Mycobacterium ulcerans isolate ITM 842 laminin-binding protein (HupB) mRNA, complete cds Length = 636 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 313 ggccttcttggcgggggccttctt 336 ||||||||||||||| |||||||| Sbjct: 372 ggccttcttggcgggagccttctt 349
>gb|AY954298.1| Mycobacterium ulcerans isolate ITM 94-1328 laminin-binding protein (HupB) mRNA, complete cds Length = 636 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 313 ggccttcttggcgggggccttctt 336 ||||||||||||||| |||||||| Sbjct: 372 ggccttcttggcgggagccttctt 349
>gb|AY954297.1| Mycobacterium ulcerans isolate ITM 98-912 laminin-binding protein (HupB) mRNA, complete cds Length = 663 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 313 ggccttcttggcgggggccttctt 336 ||||||||||||||| |||||||| Sbjct: 372 ggccttcttggcgggagccttctt 349
>gb|AY954296.1| Mycobacterium ulcerans isolate ITM 5114 laminin-binding protein (HupB) mRNA, complete cds Length = 663 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 313 ggccttcttggcgggggccttctt 336 ||||||||||||||| |||||||| Sbjct: 372 ggccttcttggcgggagccttctt 349
>gb|AY954295.1| Mycobacterium ulcerans isolate ITM 9537 PNG laminin-binding protein (HupB) mRNA, complete cds Length = 663 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 313 ggccttcttggcgggggccttctt 336 ||||||||||||||| |||||||| Sbjct: 372 ggccttcttggcgggagccttctt 349
>gb|AY954294.1| Mycobacterium ulcerans isolate ITM 9540 laminin-binding protein (HupB) mRNA, complete cds Length = 690 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 313 ggccttcttggcgggggccttctt 336 ||||||||||||||| |||||||| Sbjct: 372 ggccttcttggcgggagccttctt 349
>gb|AY954292.1| Mycobacterium ulcerans isolate ITM 97-483 laminin-binding protein (HupB) mRNA, complete cds Length = 690 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 313 ggccttcttggcgggggccttctt 336 ||||||||||||||| |||||||| Sbjct: 372 ggccttcttggcgggagccttctt 349
>gb|BC110349.1| Homo sapiens cDNA clone IMAGE:5212273, containing frame-shift errors Length = 1805 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 cactattttgttctcgacac 50 |||||||||||||||||||| Sbjct: 309 cactattttgttctcgacac 290
>gb|CP000093.1| Ralstonia eutropha JMP134 plasmid 1, complete sequence Length = 87688 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 gtcttggcggccttggcggg 471 |||||||||||||||||||| Sbjct: 43677 gtcttggcggccttggcggg 43658
>emb|AL121985.13|HSA404F10 Human DNA sequence from clone RP11-404F10 on chromosome 1q23.1-24.1 Contains the 5' end of the SLAMF1 gene for signaling lymphocytic activation molecule family member 1, a SET translocation (myeloid leukemia-associated) (SET) pseudogene, a novel gene, the CD48 gene for CD48 antigen (B-cell membrane protein), the SLAMF7 gene for SLAM family member 7 and the 5' end of the LY9 gene for lymphocyte antigen 9, complete sequence Length = 195976 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 cactattttgttctcgacac 50 |||||||||||||||||||| Sbjct: 24643 cactattttgttctcgacac 24662
>gb|AC073585.8| Homo sapiens chromosome 10 clone RP11-564D11, complete sequence Length = 197295 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 cgccgccgccgtcttcgtca 152 |||||||||||||||||||| Sbjct: 29641 cgccgccgccgtcttcgtca 29622
>gb|AC060775.5| Homo sapiens chromosome 8, clone RP11-678D18, complete sequence Length = 201956 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 2 atcaatcataattaattagataaa 25 ||||||||||||||||||| |||| Sbjct: 146764 atcaatcataattaattagttaaa 146787
>gb|BC067847.1| Homo sapiens signaling lymphocytic activation molecule family member 1, mRNA (cDNA clone IMAGE:30343851), complete cds Length = 1947 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 cactattttgttctcgacac 50 |||||||||||||||||||| Sbjct: 315 cactattttgttctcgacac 296
>gb|BC022564.1| Homo sapiens zinc finger protein, subfamily 1A, 5, mRNA (cDNA clone MGC:27049 IMAGE:4796825), complete cds Length = 2916 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 cgccgccgccgtcttcgtca 152 |||||||||||||||||||| Sbjct: 61 cgccgccgccgtcttcgtca 42
>emb|CR859262.1| Pongo pygmaeus mRNA; cDNA DKFZp468N105 (from clone DKFZp468N105) Length = 2785 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 cgccgccgccgtcttcgtca 152 |||||||||||||||||||| Sbjct: 71 cgccgccgccgtcttcgtca 52
>emb|BX647958.1|HSM808104 Homo sapiens mRNA; cDNA DKFZp686M0751 (from clone DKFZp686M0751) Length = 2914 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 cgccgccgccgtcttcgtca 152 |||||||||||||||||||| Sbjct: 55 cgccgccgccgtcttcgtca 36
>dbj|D26094.1|FVBPOAD2A Flavobacterium sp. plasmid pOAD2 DNA, whole sequence Length = 45519 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 tcgccgccgccgtcttcgtc 151 |||||||||||||||||||| Sbjct: 8220 tcgccgccgccgtcttcgtc 8201
>gb|AF526299.1| Mycobacterium avium subsp. paratuberculosis heparin-binding hemagglutinin adhesin-like protein gene, complete cds Length = 573 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 gccttcttggcgggggcctt 333 |||||||||||||||||||| Sbjct: 545 gccttcttggcgggggcctt 526
>dbj|AK122899.1| Homo sapiens cDNA FLJ16565 fis, clone SYNOV4007711, highly similar to Homo sapiens zinc finger protein, subfamily 1A, 5 (Pegasus) (PEGASUS) Length = 3458 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 cgccgccgccgtcttcgtca 152 |||||||||||||||||||| Sbjct: 991 cgccgccgccgtcttcgtca 972
>emb|CR591039.1| full-length cDNA clone CS0DD002YA03 of Neuroblastoma Cot 50-normalized of Homo sapiens (human) Length = 1600 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 cgccgccgccgtcttcgtca 152 |||||||||||||||||||| Sbjct: 31 cgccgccgccgtcttcgtca 12
>emb|CR590430.1| full-length cDNA clone CS0DI065YO02 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1687 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 cactattttgttctcgacac 50 |||||||||||||||||||| Sbjct: 299 cactattttgttctcgacac 280
>gb|AC079319.19| Homo sapiens 12q BAC RP11-118A3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 152449 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 cacagaacatgggaaaactg 270 |||||||||||||||||||| Sbjct: 113734 cacagaacatgggaaaactg 113753
>gb|DQ400925.1| Sus scrofa signaling lymphocytic activation molecule mRNA, partial cds Length = 190 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 cactattttgttctcgacac 50 |||||||||||||||||||| Sbjct: 75 cactattttgttctcgacac 56
>dbj|AK148546.1| Mus musculus adult pancreas islet cells cDNA, RIKEN full-length enriched library, clone:C820020O04 product:hypothetical protein, full insert sequence Length = 4169 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 actaacaacacagaacatgg 262 |||||||||||||||||||| Sbjct: 2830 actaacaacacagaacatgg 2811
>dbj|AK148518.1| Mus musculus adult pancreas islet cells cDNA, RIKEN full-length enriched library, clone:C820017C07 product:hypothetical protein, full insert sequence Length = 4140 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 actaacaacacagaacatgg 262 |||||||||||||||||||| Sbjct: 2800 actaacaacacagaacatgg 2781
>dbj|AK164547.1| Mus musculus 13 days embryo heart cDNA, RIKEN full-length enriched library, clone:D330037N22 product:hypothetical protein, full insert sequence Length = 3580 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 actaacaacacagaacatgg 262 |||||||||||||||||||| Sbjct: 2840 actaacaacacagaacatgg 2821
>dbj|AK162324.1| Mus musculus adult male cecum cDNA, RIKEN full-length enriched library, clone:9130009C02 product:hypothetical protein, full insert sequence Length = 2060 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 actaacaacacagaacatgg 262 |||||||||||||||||||| Sbjct: 1308 actaacaacacagaacatgg 1289
>gb|AC008827.6| Homo sapiens chromosome 5 clone CTD-2136P21, complete sequence Length = 68144 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 agaacacagaatcctggact 245 |||||||||||||||||||| Sbjct: 12636 agaacacagaatcctggact 12617
>gb|AC091920.2| Homo sapiens chromosome 5 clone RP11-254G13, complete sequence Length = 150354 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 agaacacagaatcctggact 245 |||||||||||||||||||| Sbjct: 1173 agaacacagaatcctggact 1192
>gb|AE016814.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome I, complete sequence Length = 691920 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 411 cgggtgccgccgccttcttc 430 |||||||||||||||||||| Sbjct: 590112 cgggtgccgccgccttcttc 590131
>gb|AY040554.1| Homo sapiens SLAM mRNA, complete cds Length = 1008 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 cactattttgttctcgacac 50 |||||||||||||||||||| Sbjct: 237 cactattttgttctcgacac 218
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 313 ggccttcttggcgggggccttctt 336 ||||||||||||||| |||||||| Sbjct: 33092092 ggccttcttggcgggcgccttctt 33092069 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 cctcgccgccgccgtcttcg 149 |||||||||||||||||||| Sbjct: 12077860 cctcgccgccgccgtcttcg 12077841
>gb|AC137547.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0052J20, complete sequence Length = 144969 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 cctcgccgccgccgtcttcg 149 |||||||||||||||||||| Sbjct: 101677 cctcgccgccgccgtcttcg 101658
>gb|AF302038.1|AF302038 Saguinus oedipus signaling lymphocytic activation molecule 1 (CDw150) mRNA, complete cds Length = 1048 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 cactattttgttctcgacac 50 |||||||||||||||||||| Sbjct: 246 cactattttgttctcgacac 227
>gb|AF252303.1|AF252303S1 Homo sapiens signaling lymphocytic activation molecule (SLAM) gene, exon 2 Length = 1456 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 cactattttgttctcgacac 50 |||||||||||||||||||| Sbjct: 893 cactattttgttctcgacac 874
>gb|AC008269.4| Homo sapiens BAC clone RP11-95H11 from 2, complete sequence Length = 161935 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 333 tcttggcgggcgtggccttcttca 356 |||||| ||||||||||||||||| Sbjct: 114733 tcttggagggcgtggccttcttca 114756
>gb|AC104321.7| Oryza sativa chromosome 3 BAC OSJNBa0052F07 genomic sequence, complete sequence Length = 139823 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 313 ggccttcttggcgggggccttctt 336 ||||||||||||||| |||||||| Sbjct: 121726 ggccttcttggcgggcgccttctt 121749
>gb|AF257239.1|AF257239 Saguinus oedipus CDw150 mRNA, complete cds Length = 1480 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 cactattttgttctcgacac 50 |||||||||||||||||||| Sbjct: 248 cactattttgttctcgacac 229
>dbj|AB055269.1| Macaca fascicularis brain cDNA, clone:QflA-11070 Length = 2086 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 cgccgccgccgtcttcgtca 152 |||||||||||||||||||| Sbjct: 722 cgccgccgccgtcttcgtca 741
>dbj|AK026626.1| Homo sapiens cDNA: FLJ22973 fis, clone KAT11042 Length = 1727 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 cgccgccgccgtcttcgtca 152 |||||||||||||||||||| Sbjct: 51 cgccgccgccgtcttcgtca 32
>dbj|AK102748.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033106K04, full insert sequence Length = 2189 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 cctcgccgccgccgtcttcg 149 |||||||||||||||||||| Sbjct: 354 cctcgccgccgccgtcttcg 373
>gb|AC154822.2| Mus musculus BAC clone RP24-537L18 from 13, complete sequence Length = 167628 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 gatataaaatttacagtcta 226 |||||||||||||||||||| Sbjct: 37085 gatataaaatttacagtcta 37104
>dbj|AK099211.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013072E13, full insert sequence Length = 1328 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 313 ggccttcttggcgggggccttctt 336 ||||||||||||||| |||||||| Sbjct: 931 ggccttcttggcgggcgccttctt 908
>ref|NM_208033.1| Eremothecium gossypii AAR138Cp (AAR138C), mRNA Length = 1107 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 411 cgggtgccgccgccttcttc 430 |||||||||||||||||||| Sbjct: 424 cgggtgccgccgccttcttc 405
>dbj|AK067840.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013128M09, full insert sequence Length = 1389 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 313 ggccttcttggcgggggccttctt 336 ||||||||||||||| |||||||| Sbjct: 931 ggccttcttggcgggcgccttctt 908
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 tcgccgccgccgtcttcgtc 151 |||||||||||||||||||| Sbjct: 3608073 tcgccgccgccgtcttcgtc 3608054
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 cgtggccttcttcaccggcg 362 |||||||||||||||||||| Sbjct: 236641 cgtggccttcttcaccggcg 236622
>gb|AC140304.3| Mus musculus BAC clone RP23-386K4 from 15, complete sequence Length = 215452 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 243 actaacaacacagaacatgg 262 |||||||||||||||||||| Sbjct: 4637 actaacaacacagaacatgg 4656
>gb|AF008943.1|AF008943 Crithidia fasciculata kinetoplast-associated protein p18-1 (KAP2-1) gene, complete cds Length = 764 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 cttcttggccttcttggcgg 326 |||||||||||||||||||| Sbjct: 411 cttcttggccttcttggcgg 392
>gb|L41841.1|CREHIH3G Chlamydomonas reinhardtii histone H3, histone H4, histone H2B, and histone H2A genes, complete cds Length = 4358 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 cttcttggccttcttggcgg 326 |||||||||||||||||||| Sbjct: 3384 cttcttggccttcttggcgg 3403
>gb|U09821.1|MSU09821 Mycobacterium smegmatis sigma factor MysA (mysA) gene, complete cds Length = 2000 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 319 cttggcgggggccttcttggcggg 342 |||||| ||||||||||||||||| Sbjct: 363 cttggctggggccttcttggcggg 340
>gb|U33017.1|HSU33017 Human signaling lymphocytic activation molecule (SLAM) mRNA, complete cds Length = 1789 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 cactattttgttctcgacac 50 |||||||||||||||||||| Sbjct: 370 cactattttgttctcgacac 351
>emb|AL928658.6| Mouse DNA sequence from clone RP23-238A18 on chromosome 2, complete sequence Length = 220679 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 214 aatttacagtctagaacacagaat 237 |||||||||||||||| ||||||| Sbjct: 161237 aatttacagtctagaagacagaat 161214 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,272,055 Number of Sequences: 3902068 Number of extensions: 4272055 Number of successful extensions: 95680 Number of sequences better than 10.0: 165 Number of HSP's better than 10.0 without gapping: 166 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 92802 Number of HSP's gapped (non-prelim): 2855 length of query: 484 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 462 effective length of database: 17,147,199,772 effective search space: 7922006294664 effective search space used: 7922006294664 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
