ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart36c12 |
|---|---|
| Clone Library Name | barley_pub |
>PPOX_MOUSE (P51175) Protoporphyrinogen oxidase (EC 1.3.3.4) (PPO)| Length = 477 Score = 32.0 bits (71), Expect = 0.78 Identities = 17/36 (47%), Positives = 21/36 (58%) Frame = +1 Query: 289 GCHRRRPSRFLAAKGLLYPLPPCAATSIRGWLRPSP 396 G H +RFL G L+PLP + +RG LRPSP Sbjct: 89 GDHPAAQNRFLYVGGTLHPLP----SGLRGLLRPSP 120
>HYD_DROME (P51592) Ubiquitin--protein ligase hyd (EC 6.3.2.-) (Protein| hyperplastic discs) Length = 2885 Score = 30.8 bits (68), Expect = 1.7 Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 2/94 (2%) Frame = +3 Query: 78 IPVPNMKT-DENV*AAVDGPSTSYSTYTQLKLQGGFSNFKCRCFIDDTRSRLRAAHCRIQ 254 +P+ + KT D NV +G ST + Y QLK + G +FK D +S+ Sbjct: 2122 VPIDSSKTGDGNVTNKAEG-STDSNIYVQLKKKQGSDDFKSHKEADGNQSKYEKVVLMET 2180 Query: 255 EDFLLSCRRSNR-LPSKAPLTISRCKRPSLSFAT 353 +D L S +S L + P I + S+S AT Sbjct: 2181 DDSLPSTSKSTEALMATRPEVIIAPNKASVSPAT 2214
>PPOX_MACFA (Q60HD5) Protoporphyrinogen oxidase (EC 1.3.3.4) (PPO)| Length = 477 Score = 30.4 bits (67), Expect = 2.3 Identities = 17/36 (47%), Positives = 20/36 (55%) Frame = +1 Query: 289 GCHRRRPSRFLAAKGLLYPLPPCAATSIRGWLRPSP 396 G H +RFL G L+ LP T +RG LRPSP Sbjct: 89 GDHPAAQNRFLYVGGALHALP----TGLRGLLRPSP 120
>PPOX_HUMAN (P50336) Protoporphyrinogen oxidase (EC 1.3.3.4) (PPO)| Length = 477 Score = 30.4 bits (67), Expect = 2.3 Identities = 17/36 (47%), Positives = 20/36 (55%) Frame = +1 Query: 289 GCHRRRPSRFLAAKGLLYPLPPCAATSIRGWLRPSP 396 G H +RFL G L+ LP T +RG LRPSP Sbjct: 89 GDHPAAQNRFLYVGGALHALP----TGLRGLLRPSP 120
>POLS_SINDV (P03316) Structural polyprotein (p130) [Contains: Capsid protein (EC| 3.4.21.-) (Coat protein) (C); p62 (E3/E2); E3 protein (Spike glycoprotein E3); E2 envelope glycoprotein (Spike glycoprotein E2); 6K protein; E1 envelope glycoprotein (Spike g Length = 1245 Score = 30.0 bits (66), Expect = 2.9 Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 3/89 (3%) Frame = +3 Query: 3 EVLMIQEGTLPSTLYTFYVLPITVQIPVPNMKTDENV*AAVDGPSTSYSTYTQLKLQGGF 182 E+ ++ LPST + T +P P +K +++ +++ YT K+ GG Sbjct: 836 EITVMSSEVLPSTNQEYITCKFTTVVPSPKIKCC----GSLECQPAAHADYT-CKVFGGV 890 Query: 183 SNFK---CRCFIDDTRSRLRAAHCRIQED 260 F +CF D S++ A+ + D Sbjct: 891 YPFMWGGAQCFCDSENSQMSEAYVELSAD 919
>POLS_SINDO (P27285) Structural polyprotein (p130) [Contains: Capsid protein (EC| 3.4.21.-) (Coat protein) (C); p62 (E3/E2); E3 protein (Spike glycoprotein E3); E2 envelope glycoprotein (Spike glycoprotein E2); 6K protein; E1 envelope glycoprotein (Spike g Length = 1245 Score = 30.0 bits (66), Expect = 2.9 Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 3/89 (3%) Frame = +3 Query: 3 EVLMIQEGTLPSTLYTFYVLPITVQIPVPNMKTDENV*AAVDGPSTSYSTYTQLKLQGGF 182 E+ ++ LPST + T +P P +K +++ +++ YT K+ GG Sbjct: 836 EITVMSSEVLPSTNQEYITCKFTTVVPSPKVKCC----GSLECQPAAHADYT-CKVFGGV 890 Query: 183 SNFK---CRCFIDDTRSRLRAAHCRIQED 260 F +CF D S++ A+ + D Sbjct: 891 YPFMWGGAQCFCDSENSQMSEAYVELSAD 919
>CS015_MACFA (Q4R6B2) Protein C19orf15 homolog precursor| Length = 1159 Score = 28.9 bits (63), Expect = 6.6 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = -2 Query: 432 PCLNTTVICMISWAGPQPTSNGSCCTR 352 PC+ V C +SW P P NGS TR Sbjct: 158 PCIAEEV-CSMSWYTPMPIKNGSVVTR 183
>SYD_RALEJ (Q475W2) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 602 Score = 28.9 bits (63), Expect = 6.6 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%) Frame = -1 Query: 457 ALSEDEINAMLKHNRNMYDFLG-WAAANLEWKLLHKVAKDKEGLLQREIVRGAFDGSLFE 281 A+S EI+A + F+G + A L W +++VAK ++G LQ IV+ D ++ E Sbjct: 333 AISRGEIDAYTQ-------FVGIYGAKGLAWVKVNEVAKGRDG-LQSPIVKNLHDAAITE 384 Query: 280 RLQES 266 L+ + Sbjct: 385 ILKRT 389
>COBD_LEPIN (Q8EXQ8) Cobalamin biosynthesis protein cobD| Length = 315 Score = 28.9 bits (63), Expect = 6.6 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Frame = -1 Query: 439 INAMLKHNRNMYDFLGWAAANLEWKLLHK-VAKDKEGLLQREIVRGAFDGS 290 I M+ H++ +YD L L K + K VA+D E L + EI+R + + Sbjct: 94 IRDMIDHSKEVYDALVQTNLPLARKKVSKIVARDTENLSESEIIRACVEST 144
>COBD_LEPIC (Q75FR2) Cobalamin biosynthesis protein cobD| Length = 315 Score = 28.9 bits (63), Expect = 6.6 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Frame = -1 Query: 439 INAMLKHNRNMYDFLGWAAANLEWKLLHK-VAKDKEGLLQREIVRGAFDGS 290 I M+ H++ +YD L L K + K VA+D E L + EI+R + + Sbjct: 94 IRDMIDHSKEVYDALVQTNLPLARKKVSKIVARDTENLSESEIIRACVEST 144
>SAP1_YEAST (P39955) Protein SAP1| Length = 897 Score = 28.5 bits (62), Expect = 8.6 Identities = 14/42 (33%), Positives = 23/42 (54%) Frame = +1 Query: 97 RQMKMFRPP*TGRALLIRRTHNSNYREAFQISSADVS*TTLG 222 R M +F PP TG+ +L R ++ F IS++ ++ LG Sbjct: 639 RGMLLFGPPGTGKTMLARAVATESHSTFFSISASSLTSKYLG 680
>UL17_HHV11 (P10201) Protein UL17| Length = 703 Score = 28.5 bits (62), Expect = 8.6 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = +3 Query: 273 CRRSNRLPSKAPLTISRCKRPSLSFATLCSNFHSRL 380 CR +PS AP + P S+A LC F+ RL Sbjct: 622 CRFMEAVPSTAPRRVCEQYLPGESYAYLCLGFNRRL 657 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,502,968 Number of Sequences: 219361 Number of extensions: 1435766 Number of successful extensions: 4054 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 3964 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4054 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2909956200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
