ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart36c05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CF075_RAT (Q7TNK6) Putative RNA methylase C6orf75 homolog (EC 2.... 32 0.81
2CF075_PONPY (Q5R962) Putative RNA methylase C6orf75 homolog (EC ... 32 0.81
3CF075_HUMAN (Q7Z4G4) Putative RNA methylase C6orf75 (EC 2.1.1.-) 32 1.1
4CF075_MOUSE (Q9CWH5) Putative RNA methylase C6orf75 homolog (EC ... 32 1.4
5TRIB1_HUMAN (Q96RU8) Tribbles homolog 1 (TRB-1) (SKIP1) (G-prote... 29 9.0

>CF075_RAT (Q7TNK6) Putative RNA methylase C6orf75 homolog (EC 2.1.1.-)|
          Length = 463

 Score = 32.3 bits (72), Expect = 0.81
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = +1

Query: 322 HIYVAILYPSSELNVDAPNLLEDAVVFIARFCWILQASSSPSTNSLPPWTPCSHALS 492
           H+ V++ Y  S++ +D  N   + +V   R  + L   +   T  + PW PC   +S
Sbjct: 337 HVPVSLTYHLSDMFLDLINFAAETLVLGGRLVYWLPVYTPEYTEKMVPWHPCLRLVS 393



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>CF075_PONPY (Q5R962) Putative RNA methylase C6orf75 homolog (EC 2.1.1.-)|
          Length = 463

 Score = 32.3 bits (72), Expect = 0.81
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = +1

Query: 322 HIYVAILYPSSELNVDAPNLLEDAVVFIARFCWILQASSSPSTNSLPPWTPCSHALS 492
           H+ V++ Y  S++ +D  N   + +V   R  + L   +   T  + PW PC   +S
Sbjct: 340 HVPVSLSYHLSDMFLDLLNFAAETLVLGGRLVYWLPVYTPEYTEEMVPWHPCLELIS 396



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>CF075_HUMAN (Q7Z4G4) Putative RNA methylase C6orf75 (EC 2.1.1.-)|
          Length = 463

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = +1

Query: 322 HIYVAILYPSSELNVDAPNLLEDAVVFIARFCWILQASSSPSTNSLPPWTPCSHALS 492
           H+ V++ Y  S++ +D  N   + +V   R  + L   +   T  + PW PC   +S
Sbjct: 340 HVPVSLSYHLSDMFLDLLNFAAETLVLGGRLVYWLPVYTPEYTEEMVPWHPCLELVS 396



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>CF075_MOUSE (Q9CWH5) Putative RNA methylase C6orf75 homolog (EC 2.1.1.-)|
          Length = 460

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = +1

Query: 322 HIYVAILYPSSELNVDAPNLLEDAVVFIARFCWILQASSSPSTNSLPPWTPCSHALS 492
           H+ V++ Y  S++  D  N   + +V   R  + L   +   T  + PW PC   +S
Sbjct: 337 HVPVSLSYHLSDMFFDLLNFAAETLVLGGRLVYWLPVYTPEYTEEMVPWHPCLRLIS 393



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>TRIB1_HUMAN (Q96RU8) Tribbles homolog 1 (TRB-1) (SKIP1) (G-protein-coupled|
           receptor induced protein 2) (GIG-2)
          Length = 372

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +1

Query: 334 AILYPSSELNVDAPNLLE-DAVVFIARFCWILQASSSPSTNSLPPWTPCS 480
           A+L+P++   V A  LL+ D    +A  C  L   SSP     PP +PCS
Sbjct: 20  ALLFPATR-GVPAKRLLDADDAAAVAAKCPRLSECSSPPDYLSPPGSPCS 68


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,888,062
Number of Sequences: 219361
Number of extensions: 1198639
Number of successful extensions: 2405
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2399
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 3970331829
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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