ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart36c05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_550631.1| Oryza sativa (japonica cultivar-group), mRNA 111 2e-21
2dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 111 2e-21
3dbj|AP004806.3| Oryza sativa (japonica cultivar-group) genomic D... 111 2e-21
4dbj|AP006554.2| Oryza sativa (japonica cultivar-group) genomic D... 111 2e-21
5dbj|AK067407.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 2e-21
6gb|AY109215.1| Zea mays PCO061564 mRNA sequence 90 9e-15
7gb|AY105619.1| Zea mays PCO061563 mRNA sequence 48 0.029
8gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 46 0.12
9dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.12
10gb|AC113930.2| Oryza sativa (japonica cultivar-group) chromosome... 46 0.12
11gb|AC105733.2| Oryza sativa (japonica cultivar-group) chromosome... 46 0.12
12ref|XM_813209.1| Trypanosoma cruzi strain CL Brener mucin-associ... 44 0.46
13ref|NM_112611.2| Arabidopsis thaliana unknown protein AT3G17330 ... 42 1.8
14gb|BT025338.1| Arabidopsis thaliana At3g17330 mRNA, complete cds 42 1.8
15emb|CR861065.1| Pongo pygmaeus mRNA; cDNA DKFZp459A0115 (from cl... 42 1.8
16gb|AC130680.13| Mus musculus chromosome 7, clone RP23-180G17, co... 42 1.8
17emb|BX822800.1|CNS0A7C2 Arabidopsis thaliana Full-length cDNA Co... 42 1.8
18dbj|AB022216.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 42 1.8
19gb|AC171680.5| Mus musculus chromosome 7, clone RP23-146B24, com... 42 1.8
20gb|AC146698.10| Mus musculus chromosome 13, clone RP24-342B2, co... 40 7.1
21gb|AC161122.3| Pan troglodytes BAC clone CH251-727J16 from chrom... 40 7.1
22gb|AY225792.1| Zoroaster fulgens 16S ribosomal RNA gene, partial... 40 7.1
23gb|AY225791.1| Zoroaster fulgens 16S ribosomal RNA gene, partial... 40 7.1
24gb|AC124567.4| Mus musculus BAC clone RP23-145E22 from 6, comple... 40 7.1
25gb|AC000118.1| Homo sapiens BAC clone CTB-72E11 from 7, complete... 40 7.1
26gb|AC152406.8| Medicago truncatula clone mth2-71o20, complete se... 40 7.1
27emb|AL391988.14| Human DNA sequence from clone RP11-129M16 on ch... 40 7.1
28emb|AL160258.9| Human DNA sequence from clone RP11-136M9 on chro... 40 7.1
29emb|AL139274.17| Human DNA sequence from clone RP11-393I2 on chr... 40 7.1
30emb|BX294122.12| Zebrafish DNA sequence from clone DKEYP-6A12 in... 40 7.1
31emb|BX322577.11| Zebrafish DNA sequence from clone RP71-52F21, c... 40 7.1
32gb|AC104031.6| Homo sapiens chromosome 11, clone RP11-483L5, com... 40 7.1
33gb|AC138356.3| Homo sapiens chromosome 8, clone RP11-863K10, com... 40 7.1
34gb|AC137579.3| Homo sapiens chromosome 8, clone RP11-346L1, comp... 40 7.1
35gb|AC153603.3| Mus musculus 6 BAC RP23-315I7 (Roswell Park Cance... 40 7.1
36gb|AC005887.3|AC005887 citb_173_i_12, complete sequence 40 7.1
37gb|AC005880.3|AC005880 citb_43_a_11, complete sequence 40 7.1
38emb|BX470106.8| Zebrafish DNA sequence from clone DKEY-11P6 in l... 40 7.1
39dbj|AP006291.2| Homo sapiens genomic DNA, chromosome 8 clone:RP1... 40 7.1
40emb|AL935141.16| Zebrafish DNA sequence from clone CH211-173A9 i... 40 7.1
41dbj|AP000066.1| Homo sapiens genomic DNA, chromosome 8p11.2, sen... 40 7.1 
>ref|XM_550631.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1074

 Score =  111 bits (56), Expect = 2e-21
 Identities = 98/112 (87%)
 Strand = Plus / Minus

                                                                       
Query: 412 ttttgctggattttgcaggcttcttcttccccttccaccaattctttaccaccttggaca 471
           ||||||||||||||| ||| ||||||||||| | |||||| |||||||||||||| ||||
Sbjct: 961 ttttgctggattttgaaggtttcttcttcccttgccaccatttctttaccacctttgaca 902

                                                               
Query: 472 ccttgctcacatgccctttcagtttcttgccggtatccttgatctgtttcac 523
           ||||| ||||||| ||||| |  || ||||| |||||||||||||| |||||
Sbjct: 901 ccttgttcacatggccttttaactttttgcctgtatccttgatctgcttcac 850
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  111 bits (56), Expect = 2e-21
 Identities = 98/112 (87%)
 Strand = Plus / Plus

                                                                           
Query: 412     ttttgctggattttgcaggcttcttcttccccttccaccaattctttaccaccttggaca 471
               ||||||||||||||| ||| ||||||||||| | |||||| |||||||||||||| ||||
Sbjct: 2588367 ttttgctggattttgaaggtttcttcttcccttgccaccatttctttaccacctttgaca 2588426

                                                                   
Query: 472     ccttgctcacatgccctttcagtttcttgccggtatccttgatctgtttcac 523
               ||||| ||||||| ||||| |  || ||||| |||||||||||||| |||||
Sbjct: 2588427 ccttgttcacatggccttttaactttttgcctgtatccttgatctgcttcac 2588478
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>dbj|AP004806.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0710H01
          Length = 187107

 Score =  111 bits (56), Expect = 2e-21
 Identities = 98/112 (87%)
 Strand = Plus / Plus

                                                                         
Query: 412   ttttgctggattttgcaggcttcttcttccccttccaccaattctttaccaccttggaca 471
             ||||||||||||||| ||| ||||||||||| | |||||| |||||||||||||| ||||
Sbjct: 43708 ttttgctggattttgaaggtttcttcttcccttgccaccatttctttaccacctttgaca 43767

                                                                 
Query: 472   ccttgctcacatgccctttcagtttcttgccggtatccttgatctgtttcac 523
             ||||| ||||||| ||||| |  || ||||| |||||||||||||| |||||
Sbjct: 43768 ccttgttcacatggccttttaactttttgcctgtatccttgatctgcttcac 43819
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>dbj|AP006554.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
           PAC clone:P0529C07
          Length = 174011

 Score =  111 bits (56), Expect = 2e-21
 Identities = 98/112 (87%)
 Strand = Plus / Plus

                                                                       
Query: 412 ttttgctggattttgcaggcttcttcttccccttccaccaattctttaccaccttggaca 471
           ||||||||||||||| ||| ||||||||||| | |||||| |||||||||||||| ||||
Sbjct: 114 ttttgctggattttgaaggtttcttcttcccttgccaccatttctttaccacctttgaca 173

                                                               
Query: 472 ccttgctcacatgccctttcagtttcttgccggtatccttgatctgtttcac 523
           ||||| ||||||| ||||| |  || ||||| |||||||||||||| |||||
Sbjct: 174 ccttgttcacatggccttttaactttttgcctgtatccttgatctgcttcac 225
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>dbj|AK067407.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013100C15, full
           insert sequence
          Length = 1276

 Score =  111 bits (56), Expect = 2e-21
 Identities = 98/112 (87%)
 Strand = Plus / Minus

                                                                       
Query: 412 ttttgctggattttgcaggcttcttcttccccttccaccaattctttaccaccttggaca 471
           ||||||||||||||| ||| ||||||||||| | |||||| |||||||||||||| ||||
Sbjct: 960 ttttgctggattttgaaggtttcttcttcccttgccaccatttctttaccacctttgaca 901

                                                               
Query: 472 ccttgctcacatgccctttcagtttcttgccggtatccttgatctgtttcac 523
           ||||| ||||||| ||||| |  || ||||| |||||||||||||| |||||
Sbjct: 900 ccttgttcacatggccttttaactttttgcctgtatccttgatctgcttcac 849
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>gb|AY109215.1| Zea mays PCO061564 mRNA sequence
          Length = 1316

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 99/117 (84%)
 Strand = Plus / Minus

                                                                       
Query: 410 gcttttgctggattttgcaggcttcttcttccccttccaccaattctttaccaccttgga 469
           ||||||||||||||| |||||||||||   ||| |||||||| ||||||||||    |||
Sbjct: 956 gcttttgctggatttggcaggcttctttgcccctttccaccatttctttaccataccgga 897

                                                                    
Query: 470 caccttgctcacatgccctttcagtttcttgccggtatccttgatctgtttcacgac 526
           ||||||| | |||||||||||||  ||||||| ||||||||||| ||| | ||||||
Sbjct: 896 caccttgtttacatgccctttcaacttcttgctggtatccttgaactgctgcacgac 840
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>gb|AY105619.1| Zea mays PCO061563 mRNA sequence
          Length = 927

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                           
Query: 410 gcttttgctggattttgcaggcttcttcttccccttccaccaattctt 457
           ||||||||||||||| |||||||||||   ||| |||||||| |||||
Sbjct: 255 gcttttgctggatttggcaggcttctttgcccctttccaccagttctt 302
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 104    agatgtagaacagtagaacagtagaag 130
              ||||||||||||||||||| |||||||
Sbjct: 510211 agatgtagaacagtagaactgtagaag 510237
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
              complete sequence
          Length = 36192742

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 104    agatgtagaacagtagaacagtagaag 130
              ||||||||||||||||||| |||||||
Sbjct: 510209 agatgtagaacagtagaactgtagaag 510235
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>gb|AC113930.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1384D03,
              complete sequence
          Length = 116214

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 104    agatgtagaacagtagaacagtagaag 130
              ||||||||||||||||||| |||||||
Sbjct: 108671 agatgtagaacagtagaactgtagaag 108697
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>gb|AC105733.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0043C10,
              complete sequence
          Length = 108688

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 104    agatgtagaacagtagaacagtagaag 130
              ||||||||||||||||||| |||||||
Sbjct: 105707 agatgtagaacagtagaactgtagaag 105681
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>ref|XM_813209.1| Trypanosoma cruzi strain CL Brener mucin-associated surface protein
           (MASP) (Tc00.1047053510583.130) partial mRNA
          Length = 810

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 432 ttcttcttccccttccaccaattctt 457
           |||||||||||||||| |||||||||
Sbjct: 390 ttcttcttccccttcctccaattctt 365
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>ref|NM_112611.2| Arabidopsis thaliana unknown protein AT3G17330 mRNA, complete cds
          Length = 2405

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 25  tagcagatatagggagcattt 45
           |||||||||||||||||||||
Sbjct: 435 tagcagatatagggagcattt 415
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>gb|BT025338.1| Arabidopsis thaliana At3g17330 mRNA, complete cds
          Length = 1788

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 25  tagcagatatagggagcattt 45
           |||||||||||||||||||||
Sbjct: 131 tagcagatatagggagcattt 111
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>emb|CR861065.1| Pongo pygmaeus mRNA; cDNA DKFZp459A0115 (from clone DKFZp459A0115)
          Length = 3239

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 413  tttgctggattttgcaggctt 433
            |||||||||||||||||||||
Sbjct: 1364 tttgctggattttgcaggctt 1384
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>gb|AC130680.13| Mus musculus chromosome 7, clone RP23-180G17, complete sequence
          Length = 136680

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 427   caggcttcttcttccccttcc 447
             |||||||||||||||||||||
Sbjct: 31239 caggcttcttcttccccttcc 31219
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>emb|BX822800.1|CNS0A7C2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB65ZA07 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 2045

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 25  tagcagatatagggagcattt 45
           |||||||||||||||||||||
Sbjct: 190 tagcagatatagggagcattt 170
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>dbj|AB022216.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGD8
          Length = 80167

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 25    tagcagatatagggagcattt 45
             |||||||||||||||||||||
Sbjct: 40193 tagcagatatagggagcattt 40213
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>gb|AC171680.5| Mus musculus chromosome 7, clone RP23-146B24, complete sequence
          Length = 200031

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 427   caggcttcttcttccccttcc 447
             |||||||||||||||||||||
Sbjct: 27640 caggcttcttcttccccttcc 27620
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>gb|AC146698.10| Mus musculus chromosome 13, clone RP24-342B2, complete sequence
          Length = 122164

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 431 cttcttcttccccttccacc 450
           ||||||||||||||||||||
Sbjct: 95  cttcttcttccccttccacc 114
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>gb|AC161122.3| Pan troglodytes BAC clone CH251-727J16 from chromosome 7, complete
              sequence
          Length = 211581

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 23     tgtagcagatatagggagca 42
              ||||||||||||||||||||
Sbjct: 198880 tgtagcagatatagggagca 198899
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>gb|AY225792.1| Zoroaster fulgens 16S ribosomal RNA gene, partial sequence;
           mitochondrial gene for mitochondrial product
          Length = 562

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 290 tgtacactaaaaatgtcttt 309
           ||||||||||||||||||||
Sbjct: 397 tgtacactaaaaatgtcttt 378
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>gb|AY225791.1| Zoroaster fulgens 16S ribosomal RNA gene, partial sequence;
           mitochondrial gene for mitochondrial product
          Length = 562

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 290 tgtacactaaaaatgtcttt 309
           ||||||||||||||||||||
Sbjct: 397 tgtacactaaaaatgtcttt 378
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>gb|AC124567.4| Mus musculus BAC clone RP23-145E22 from 6, complete sequence
          Length = 218924

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 90     tagttatgtcatgtagatgt 109
              ||||||||||||||||||||
Sbjct: 196530 tagttatgtcatgtagatgt 196511
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>gb|AC000118.1| Homo sapiens BAC clone CTB-72E11 from 7, complete sequence
          Length = 96625

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 23    tgtagcagatatagggagca 42
             ||||||||||||||||||||
Sbjct: 15834 tgtagcagatatagggagca 15853
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>gb|AC152406.8| Medicago truncatula clone mth2-71o20, complete sequence
          Length = 114919

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 219   aaagtactaagtactactacttct 242
             |||||||||||||||| |||||||
Sbjct: 54268 aaagtactaagtactagtacttct 54245
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>emb|AL391988.14| Human DNA sequence from clone RP11-129M16 on chromosome 10 Contains the
             3' end of the SLC18A2 gene for member 2 solute carrier
             family 18 (vesicular monoamine) and the 3' end of gene
             LOC118987, complete sequence
          Length = 104711

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 430   gcttcttcttccccttccac 449
             ||||||||||||||||||||
Sbjct: 83666 gcttcttcttccccttccac 83685
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>emb|AL160258.9| Human DNA sequence from clone RP11-136M9 on chromosome 6 Contains a
            gene for a protein similar to connexin25 and a heat shock
            protein pseudogene, complete sequence
          Length = 18683

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 472  ccttgctcacatgccctttcagtttctt 499
            ||||||||||||  ||||||||||||||
Sbjct: 979  ccttgctcacattacctttcagtttctt 1006
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>emb|AL139274.17| Human DNA sequence from clone RP11-393I2 on chromosome 6 Contains a
              reticulocalbin 1, EF-hand calcium binding domain (RCN1)
              pseudogene, a novel gene, a novel pseudogene, the gene for
              a novel zinc finger protein (C2H2 type) and 3 CpG islands,
              complete sequence
          Length = 163481

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 472    ccttgctcacatgccctttcagtttctt 499
              ||||||||||||  ||||||||||||||
Sbjct: 162460 ccttgctcacattacctttcagtttctt 162487
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>emb|BX294122.12| Zebrafish DNA sequence from clone DKEYP-6A12 in linkage group 21,
             complete sequence
          Length = 162708

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 297   taaaaatgtctttaaatcattgta 320
             |||||||||| |||||||||||||
Sbjct: 67839 taaaaatgtcattaaatcattgta 67862
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>emb|BX322577.11| Zebrafish DNA sequence from clone RP71-52F21, complete sequence
          Length = 149861

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 296    ctaaaaatgtctttaaatca 315
              ||||||||||||||||||||
Sbjct: 116151 ctaaaaatgtctttaaatca 116132
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>gb|AC104031.6| Homo sapiens chromosome 11, clone RP11-483L5, complete sequence
          Length = 212779

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 68    ctccccatcttctatgacta 87
             ||||||||||||||||||||
Sbjct: 96076 ctccccatcttctatgacta 96095
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>gb|AC138356.3| Homo sapiens chromosome 8, clone RP11-863K10, complete sequence
          Length = 190274

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 59     aaatcacctctccccatctt 78
              ||||||||||||||||||||
Sbjct: 149688 aaatcacctctccccatctt 149669
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>gb|AC137579.3| Homo sapiens chromosome 8, clone RP11-346L1, complete sequence
          Length = 176794

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 59     aaatcacctctccccatctt 78
              ||||||||||||||||||||
Sbjct: 160652 aaatcacctctccccatctt 160671
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>gb|AC153603.3| Mus musculus 6 BAC RP23-315I7 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 228174

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 90     tagttatgtcatgtagatgt 109
              ||||||||||||||||||||
Sbjct: 127626 tagttatgtcatgtagatgt 127607
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>gb|AC005887.3|AC005887 citb_173_i_12, complete sequence
          Length = 120578

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 430    gcttcttcttccccttccac 449
              ||||||||||||||||||||
Sbjct: 102748 gcttcttcttccccttccac 102729
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>gb|AC005880.3|AC005880 citb_43_a_11, complete sequence
          Length = 146388

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 430    gcttcttcttccccttccac 449
              ||||||||||||||||||||
Sbjct: 122480 gcttcttcttccccttccac 122499
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>emb|BX470106.8| Zebrafish DNA sequence from clone DKEY-11P6 in linkage group 4,
             complete sequence
          Length = 41017

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 314   cattgtagcacatttatgta 333
             ||||||||||||||||||||
Sbjct: 14417 cattgtagcacatttatgta 14436
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>dbj|AP006291.2| Homo sapiens genomic DNA, chromosome 8 clone:RP11-346L1, complete
             sequence
          Length = 104996

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 59    aaatcacctctccccatctt 78
             ||||||||||||||||||||
Sbjct: 88854 aaatcacctctccccatctt 88873
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>emb|AL935141.16| Zebrafish DNA sequence from clone CH211-173A9 in linkage group 17,
            complete sequence
          Length = 136178

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 294  cactaaaaatgtctttaaat 313
            ||||||||||||||||||||
Sbjct: 9043 cactaaaaatgtctttaaat 9024
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>dbj|AP000066.1| Homo sapiens genomic DNA, chromosome 8p11.2, senescence gene region,
             section 2/19
          Length = 100000

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 59    aaatcacctctccccatctt 78
             ||||||||||||||||||||
Sbjct: 53052 aaatcacctctccccatctt 53033


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,794,434
Number of Sequences: 3902068
Number of extensions: 4794434
Number of successful extensions: 105238
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 105044
Number of HSP's gapped (non-prelim): 189
length of query: 526
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 503
effective length of database: 17,143,297,704
effective search space: 8623078745112
effective search space used: 8623078745112
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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