>DMD_CHICK (P11533) Dystrophin|
          Length = 3660

 Score = 31.6 bits (70), Expect = 0.93
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
 Frame = +2

Query: 125  LKESQFGKDRATELHKAL*TLEERAL*GETTQNRI*------KVKVTERVTEQTAHHSAV 286
            LKE  F KD + +    +  L +R   G+T Q RI       ++K+ +++  QT H++  
Sbjct: 1809 LKEEDFNKDMSEDDESTVKELLQR---GDTLQKRITDERKREEIKIKQQLL-QTKHNALK 1864

Query: 287  SAHSKRK*KIYEMIHQY 337
               S+R+ K  E+ HQ+
Sbjct: 1865 DLRSQRRKKALEISHQW 1881

>NPTX1_RAT (P47971) Neuronal pentraxin-1 precursor (NP1) (Neuronal pentraxin|
           I) (NP-I) (47 kDa taipoxin-binding protein)
          Length = 432

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +2

Query: 5   QNDLGSINPDPIKSLLLELGLHLPIAQTMIKNLEQYTK 118
           +N +G ++  P    L +LG  L   +T ++NLEQY++
Sbjct: 115 KNTMGDLSRTPASETLSQLGQTLQSLKTRLENLEQYSR 152

>NPTX1_MOUSE (Q62443) Neuronal pentraxin-1 precursor (NP1) (Neuronal pentraxin|
           I) (NP-I)
          Length = 432

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +2

Query: 5   QNDLGSINPDPIKSLLLELGLHLPIAQTMIKNLEQYTK 118
           +N +G ++  P    L +LG  L   +T ++NLEQY++
Sbjct: 115 KNTMGDLSRTPAAETLSQLGQTLQSLKTRLENLEQYSR 152

>NPTX1_HUMAN (Q15818) Neuronal pentraxin-1 precursor (NP1) (Neuronal pentraxin|
           I) (NP-I)
          Length = 432

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +2

Query: 5   QNDLGSINPDPIKSLLLELGLHLPIAQTMIKNLEQYTK 118
           +N +G ++  P    L +LG  L   +T ++NLEQY++
Sbjct: 115 KNTMGDLSRTPAAETLSQLGQTLQSLKTRLENLEQYSR 152

>CAC1S_HUMAN (Q13698) Voltage-dependent L-type calcium channel alpha-1S subunit|
           (Voltage-gated calcium channel alpha subunit Cav1.1)
           (Calcium channel, L type, alpha-1 polypeptide, isoform
           3, skeletal muscle)
          Length = 1873

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
 Frame = -3

Query: 399 IRHHRVW---LHWSCRLVISAKFSYWCII 322
           IRH R W     W C  ++ +K  YW +I
Sbjct: 411 IRHWRQWNRIFRWKCHDIVKSKVFYWLVI 439

>DMD_CANFA (O97592) Dystrophin|
          Length = 3680

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
 Frame = +2

Query: 125  LKESQFGKDRATELHKAL*TLEERAL*GETTQNRI*------KVKVTERVTEQTAHHSAV 286
            LKE  F KD + +    +  L +R   G+  Q RI       ++K+ +++  QT H++  
Sbjct: 1809 LKEEDFNKDMSEDNEGTVKELLQR---GDNLQQRITDERKREEIKIKQQLL-QTKHNALK 1864

Query: 287  SAHSKRK*KIYEMIHQY 337
               S+R+ K  E+ HQ+
Sbjct: 1865 DLRSQRRKKALEISHQW 1881

>DMD_PIG (Q5GN48) Dystrophin|
          Length = 3674

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
 Frame = +2

Query: 125  LKESQFGKDRATELHKAL*TLEERAL*GETTQNRI*------KVKVTERVTEQTAHHSAV 286
            LKE  F KD + +    +  L +R   G+  Q RI       ++K+ +++  QT H++  
Sbjct: 1803 LKEEDFNKDMSEDNEGTVKELLQR---GDNLQQRITDERKREEIKIKQQLL-QTKHNALK 1858

Query: 287  SAHSKRK*KIYEMIHQY 337
               S+R+ K  E+ HQ+
Sbjct: 1859 DLRSQRRKKALEISHQW 1875

>DMD_MOUSE (P11531) Dystrophin|
          Length = 3678

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
 Frame = +2

Query: 125  LKESQFGKDRATELHKAL*TLEERAL*GETTQNRI*------KVKVTERVTEQTAHHSAV 286
            LKE  F KD + +    +  L +R   G+  Q RI       ++K+ +++  QT H++  
Sbjct: 1809 LKEEDFNKDMSEDNEGTVNELLQR---GDNLQQRITDERKREEIKIKQQLL-QTKHNALK 1864

Query: 287  SAHSKRK*KIYEMIHQY 337
               S+R+ K  E+ HQ+
Sbjct: 1865 DLRSQRRKKALEISHQW 1881

>PRDM5_HUMAN (Q9NQX1) PR domain zinc finger protein 5 (PR domain-containing|
           protein 5)
          Length = 630

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
 Frame = -3

Query: 231 HILFCVVSPHKALSSRV*R-ALCNSVALSFPNCDSFKQHFVYCSRFLIMVCAIGKCKPNS 55
           H+L C        SSR  + ++CNS   SF +  SF+QH   C      VC    C    
Sbjct: 217 HVLQCTAKSSLKESSRSFQCSVCNS---SFSSASSFEQHQETCRGDAKFVCKADSCGKRL 273

Query: 54  SKSDLI 37
              D +
Sbjct: 274 KSKDAL 279

>CAC1S_MOUSE (Q02789) Voltage-dependent L-type calcium channel alpha-1S subunit|
           (Voltage-gated calcium channel alpha subunit Cav1.1)
           (Calcium channel, L type, alpha-1 polypeptide, isoform
           3, skeletal muscle)
          Length = 1880

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
 Frame = -3

Query: 399 IRHHRVW---LHWSCRLVISAKFSYWCII 322
           IRH R W     W C  ++ +K  YW +I
Sbjct: 411 IRHWRQWNRVFRWKCHDLVKSKVFYWLVI 439


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,367,877
Number of Sequences: 219361
Number of extensions: 956442
Number of successful extensions: 2351
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2351
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)