ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart36c02 |
|---|---|
| Clone Library Name | barley_pub |
>COQ9_XENTR (Q5RJV0) Ubiquinone biosynthesis protein COQ9, mitochondrial| precursor Length = 317 Score = 90.1 bits (222), Expect = 3e-18 Identities = 40/88 (45%), Positives = 56/88 (63%) Frame = -3 Query: 529 LKQRAVLVDEIWHAAGDDGSDIDWYAKRTVLGGIYSASEVYMLTDNSPEFHDTWTFVNRG 350 LK +VD+IWH AGD +D+ WY +R VL GIY+ +E+ ML D+SP+F DTW F+ Sbjct: 216 LKLLTAMVDDIWHYAGDQSTDVSWYTRRAVLTGIYNTTELVMLQDSSPDFEDTWKFLENR 275 Query: 349 IKGALDLGKSYKEAAYLAETVGAGIGGS 266 I A+ +G S K+ A E V G+ G+ Sbjct: 276 ISEAMTMGTSVKQVASTGEAVIQGLMGA 303
>COQ9A_XENLA (Q3B8B2) Ubiquinone biosynthesis protein COQ9-A, mitochondrial| precursor Length = 317 Score = 90.1 bits (222), Expect = 3e-18 Identities = 40/88 (45%), Positives = 56/88 (63%) Frame = -3 Query: 529 LKQRAVLVDEIWHAAGDDGSDIDWYAKRTVLGGIYSASEVYMLTDNSPEFHDTWTFVNRG 350 LK +VD+IWH AGD +D+ WY +R VL GIY+ +E+ ML D+SP+F DTW F+ Sbjct: 216 LKLLTAMVDDIWHYAGDQSTDVSWYTRRAVLTGIYNTTELVMLQDSSPDFEDTWKFLENR 275 Query: 349 IKGALDLGKSYKEAAYLAETVGAGIGGS 266 I A+ +G S K+ A E V G+ G+ Sbjct: 276 ISEAMTMGDSVKQVASTGEAVIQGLMGA 303
>COQ9B_XENLA (Q5PPX7) Ubiquinone biosynthesis protein COQ9-B, mitochondrial| precursor Length = 293 Score = 89.4 bits (220), Expect = 6e-18 Identities = 39/88 (44%), Positives = 57/88 (64%) Frame = -3 Query: 529 LKQRAVLVDEIWHAAGDDGSDIDWYAKRTVLGGIYSASEVYMLTDNSPEFHDTWTFVNRG 350 LK + +VD++WH AGD +D+ WY R VL GIY+++E+ ML D+SP+F DTW F+ Sbjct: 192 LKLLSAMVDDMWHYAGDQSTDVSWYTSRAVLTGIYNSTELVMLQDSSPDFEDTWKFLENR 251 Query: 349 IKGALDLGKSYKEAAYLAETVGAGIGGS 266 I A+ +G S K+ A E V G+ G+ Sbjct: 252 ISEAMTMGNSMKQVASTGEAVIQGLMGA 279
>COQ9_RAT (Q68FT1) Ubiquinone biosynthesis protein COQ9, mitochondrial| precursor Length = 312 Score = 83.6 bits (205), Expect = 3e-16 Identities = 33/82 (40%), Positives = 55/82 (67%) Frame = -3 Query: 511 LVDEIWHAAGDDGSDIDWYAKRTVLGGIYSASEVYMLTDNSPEFHDTWTFVNRGIKGALD 332 +VD++WH AGD +D +WY +R VL GIY+ +E+ M+ D+SP+F DTW F++ I A++ Sbjct: 217 MVDDMWHYAGDQSTDFNWYTRRAVLAGIYNTTELVMMQDSSPDFEDTWRFLDNRINDAMN 276 Query: 331 LGKSYKEAAYLAETVGAGIGGS 266 +G + K+ E + G+ G+ Sbjct: 277 MGHTAKQVKSTGEALVQGLMGA 298
>COQ9_BOVIN (Q2NL34) Ubiquinone biosynthesis protein COQ9, mitochondrial| precursor Length = 319 Score = 83.2 bits (204), Expect = 4e-16 Identities = 33/82 (40%), Positives = 54/82 (65%) Frame = -3 Query: 511 LVDEIWHAAGDDGSDIDWYAKRTVLGGIYSASEVYMLTDNSPEFHDTWTFVNRGIKGALD 332 +VD++WH AGD +D +WY +R VL GIY+ +E+ M+ D+SP+F DTW F+ I A++ Sbjct: 224 MVDDMWHYAGDQSTDFNWYTRRAVLAGIYNTTELVMMQDSSPDFEDTWRFLENRISDAMN 283 Query: 331 LGKSYKEAAYLAETVGAGIGGS 266 +G + K+ E + G+ G+ Sbjct: 284 MGHTAKQVKSTGEALVQGLMGA 305
>COQ9_MOUSE (Q8K1Z0) Ubiquinone biosynthesis protein COQ9, mitochondrial| precursor Length = 313 Score = 83.2 bits (204), Expect = 4e-16 Identities = 33/82 (40%), Positives = 54/82 (65%) Frame = -3 Query: 511 LVDEIWHAAGDDGSDIDWYAKRTVLGGIYSASEVYMLTDNSPEFHDTWTFVNRGIKGALD 332 +VD++WH AGD +D +WY +R VL GIY+ +E+ M+ D+SP+F DTW F+ I A++ Sbjct: 218 MVDDMWHYAGDQSTDFNWYTRRAVLAGIYNTTELVMMQDSSPDFEDTWRFLENRINDAMN 277 Query: 331 LGKSYKEAAYLAETVGAGIGGS 266 +G + K+ E + G+ G+ Sbjct: 278 MGHTAKQVKSTGEALVQGLMGA 299
>COQ9_HUMAN (O75208) Ubiquinone biosynthesis protein COQ9, mitochondrial| precursor Length = 318 Score = 79.3 bits (194), Expect = 6e-15 Identities = 30/82 (36%), Positives = 53/82 (64%) Frame = -3 Query: 511 LVDEIWHAAGDDGSDIDWYAKRTVLGGIYSASEVYMLTDNSPEFHDTWTFVNRGIKGALD 332 +VD++WH AGD +D +WY +R +L IY+ +E+ M+ D+SP+F DTW F+ + A++ Sbjct: 223 MVDDMWHYAGDQSTDFNWYTRRAMLAAIYNTTELVMMQDSSPDFEDTWRFLENRVNDAMN 282 Query: 331 LGKSYKEAAYLAETVGAGIGGS 266 +G + K+ E + G+ G+ Sbjct: 283 MGHTAKQVKSTGEALVQGLMGA 304
>COQ9_DROME (Q8MKN0) Ubiquinone biosynthesis protein COQ9, mitochondrial| precursor Length = 326 Score = 49.7 bits (117), Expect = 5e-06 Identities = 25/67 (37%), Positives = 34/67 (50%) Frame = -3 Query: 529 LKQRAVLVDEIWHAAGDDGSDIDWYAKRTVLGGIYSASEVYMLTDNSPEFHDTWTFVNRG 350 L Q LVD+I + +GD D WY +R L I +E+Y L D SP TW F+ Sbjct: 224 LAQVLTLVDDICYYSGDRSVDFGWYTRRVGLATIMKMTELYFLQDKSPGHAQTWEFLKSR 283 Query: 349 IKGALDL 329 + A+ L Sbjct: 284 MDEAVQL 290
>COQ9_YEAST (Q05779) Ubiquinone biosynthesis protein COQ9, mitochondrial| precursor Length = 260 Score = 42.7 bits (99), Expect = 6e-04 Identities = 21/70 (30%), Positives = 33/70 (47%) Frame = -3 Query: 505 DEIWHAAGDDGSDIDWYAKRTVLGGIYSASEVYMLTDNSPEFHDTWTFVNRGIKGALDLG 326 D I+ + D D WYAKR + Y S+++M D S + +T+TF + + LG Sbjct: 173 DMIYFSNEKDHHDSAWYAKRLAVSSTYIGSKLFMAQDKSHNYKETFTFAKDKLHRVMRLG 232 Query: 325 KSYKEAAYLA 296 + Y A Sbjct: 233 EYYNNTEEFA 242
>APTX_MOUSE (Q7TQC5) Aprataxin homolog (Forkhead-associated domain histidine| triad-like protein) (FHA-HIT) Length = 342 Score = 30.4 bits (67), Expect = 3.2 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%) Frame = +1 Query: 403 TCTLLKLS-RCHQAQYVLHTNQYLIHHLQQH 492 TC LLKL RCH+ Q +L + L HL++H Sbjct: 309 TCELLKLPLRCHECQQLLPSIPQLKEHLRKH 339
>APTX_RAT (Q8K4H4) Aprataxin homolog (Forkhead-associated domain histidine| triad-like protein) (FHA-HIT) Length = 329 Score = 30.4 bits (67), Expect = 3.2 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%) Frame = +1 Query: 403 TCTLLKLS-RCHQAQYVLHTNQYLIHHLQQH 492 TC LLKL RCH+ Q +L + L HL++H Sbjct: 296 TCELLKLPLRCHECQQLLPSIPQLKEHLRKH 326
>SET3_SCHPO (Q10362) SET domain-containing protein 3| Length = 859 Score = 30.0 bits (66), Expect = 4.1 Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 3/89 (3%) Frame = +3 Query: 252 RTPFMEPPIP---APTVSARYAASL*DFPKSRAPLMPRFTNVHVS*NSGELSVNMYTSEA 422 ++P PP+P AP +++R+A FP + ++ H + N ++S + TS + Sbjct: 728 KSPVTTPPLPTAPAPVITSRHALVNNQFPTNNPNILD-----HKANNGDDISNALNTSRS 782 Query: 423 E*MPPSTVRFAYQSISDPSSPAACQISST 509 E P S + S+ PS+ +A + ++ Sbjct: 783 ENKPNSNL--VQGSVVKPSNTSASALPTS 809
>TRP_YEAST (P00931) Tryptophan synthase (EC 4.2.1.20)| Length = 707 Score = 29.6 bits (65), Expect = 5.4 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 2/68 (2%) Frame = -3 Query: 487 AGDDGSDIDWYAKRTVLG--GIYSASEVYMLTDNSPEFHDTWTFVNRGIKGALDLGKSYK 314 AG DG D +++ G G++ + Y+L D+ + HDT + LD Sbjct: 555 AGGDGVDTKFHSATLTAGRPGVFHGVKTYVLQDSDGQVHDT-----HSVSAGLDYPGVGP 609 Query: 313 EAAYLAET 290 E AY T Sbjct: 610 ELAYWKST 617
>PMYT1_DROME (Q9NI63) Membrane-associated tyrosine- and threonine-specific| cdc2-inhibitory kinase (EC 2.7.11.1) (Myt1 kinase) (dMyt1) Length = 533 Score = 29.3 bits (64), Expect = 7.1 Identities = 11/16 (68%), Positives = 13/16 (81%) Frame = +1 Query: 361 QMSMCRETLENYLLTC 408 QM +CRE+LE YLL C Sbjct: 178 QMELCRESLEQYLLRC 193
>DVR1_BRARE (P35621) Protein DVR-1 precursor| Length = 355 Score = 29.3 bits (64), Expect = 7.1 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%) Frame = +2 Query: 191 SRMQPAKASSCGSSFLENFVQDAIYGATDPCSHGFSKIRGLLIRFPQIKSTFDA--AIHK 364 SR +P+ ++ S + F Q + DPC +RG ++RF Q + + + A+H Sbjct: 38 SRPKPSHHAAVPSQMWKIFKQASKQTVNDPCVVSEYGVRGNIVRFMQDQGSLISAPAVHS 97 Query: 365 CPCVVK 382 CV K Sbjct: 98 FNCVRK 103
>KIF1B_RAT (O88658) Kinesin-like protein KIF1B| Length = 1816 Score = 29.3 bits (64), Expect = 7.1 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%) Frame = -3 Query: 529 LKQRAVLVDEIWHAAGDDGSDIDWYAKRTVLGG--IYSASEVYMLTDNSPEFH 377 LKQR L+ E++ AG+ GS+ ++ T+ G Y + L +SP FH Sbjct: 845 LKQRLDLMREMYDRAGEVGSNAQDDSETTMTGSDPFYDRFHWFKLVGSSPIFH 897
>K6PF_MACFA (Q60HD9) 6-phosphofructokinase, muscle type (EC 2.7.1.11)| (Phosphofructokinase 1) (Phosphohexokinase) (Phosphofructo-1-kinase isozyme A) (PFK-A) (Phosphofructokinase-M) Length = 779 Score = 29.3 bits (64), Expect = 7.1 Identities = 18/77 (23%), Positives = 37/77 (48%) Frame = -3 Query: 487 AGDDGSDIDWYAKRTVLGGIYSASEVYMLTDNSPEFHDTWTFVNRGIKGALDLGKSYKEA 308 +G D ++ + V GI++ + V+ FV+ G +G +D G + KEA Sbjct: 22 SGGDAQGMNAAVRAVVRVGIFTGARVF--------------FVHEGYQGLVDGGDNIKEA 67 Query: 307 AYLAETVGAGIGGSING 257 + + ++ +GG++ G Sbjct: 68 TWESVSMMLQLGGTVIG 84
>P85AA_XENLA (Q8UUU2) Phosphatidylinositol 3-kinase regulatory alpha subunit| (PI3-kinase p85-alpha subunit) (PtdIns-3-kinase p85-alpha) (PI3K) Length = 722 Score = 28.9 bits (63), Expect = 9.2 Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 2/58 (3%) Frame = +1 Query: 364 MSMCRETLENYLLTCTLLKLSRCHQA--QYVLHTNQYLIHHLQQHAKSHPQGLLSALS 531 +S RE++ + L K+ RC QY L T QYL+ H Q +S + LLSA S Sbjct: 206 LSAARESISSDEYVQLLRKIIRCANVPQQYWL-TLQYLLKHFFQLCQSSSKNLLSAKS 262 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,175,637 Number of Sequences: 219361 Number of extensions: 1648623 Number of successful extensions: 3983 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3874 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3979 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4085413911 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
