ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart36c01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY162186.1| Triticum monococcum extracellular invertase (exin1) mRNA, complete cds Length = 2279 Score = 264 bits (133), Expect = 3e-67 Identities = 160/169 (94%) Strand = Plus / Minus Query: 345 ccatccatccaccgagcgaaaacccagctcccgaatcctaataggcttgagctccgctca 404 |||||| ||||||| |||||||||||||||| ||||||||||||||||||| | ||||| Sbjct: 1860 ccatccgtccaccgtgcgaaaacccagctccgaaatcctaataggcttgagccctgctca 1801 Query: 405 ccgagctcgccgcgatcagcccgtcggggagcacgttcacggtcgccgtcgccatctccc 464 |||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||| Sbjct: 1800 ccgagctcgccgcgatcagctcgtcggggaggacgttcacggtcgccgtggccatctccc 1741 Query: 465 acgcgtcgaggctggacaccttgacggcgccggtgccgttgttgaacac 513 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1740 acgcgtcgaggctggacaccttgacggcgccggtgccgttgttgaacac 1692 Score = 220 bits (111), Expect = 3e-54 Identities = 159/176 (90%), Gaps = 8/176 (4%) Strand = Plus / Minus Query: 188 aacacctaaacacaaatattcctacaatctttttcctttgcagcatcctagaatcctcct 247 |||||||| |||||||| ||| || |||||||||||||||||||||||||||||||| || Sbjct: 2037 aacacctagacacaaatcttcttagaatctttttcctttgcagcatcctagaatccttct 1978 Query: 248 tctgtgctgttctggcaaac--------aatgagggagcctccatttgtacacctgagcc 299 |||||||||||| | |||| |||||||||||||||||||||||||||||||| Sbjct: 1977 tctgtgctgttccgagaaacaatgactcaatgagggagcctccatttgtacacctgagcc 1918 Query: 300 acaattgggcaggcaaatccaatcggccgtagaaattcacaatggccatccatcca 355 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 1917 acaattgggcaggcaaatccaatcggccgtggaaattcacaatggccatccatcca 1862 Score = 113 bits (57), Expect = 6e-22 Identities = 101/113 (89%), Gaps = 2/113 (1%) Strand = Plus / Minus Query: 33 tattattttgtacaactcaacggatatcatacttttacatgacacccgttttcaccttgg 92 ||||||||| ||||||||||| |||||||||| |||||| ||| |||||||||||||||| Sbjct: 2229 tattattttttacaactcaactgatatcatacatttacaggacgcccgttttcaccttgg 2170 Query: 93 aaatacactc-taaactgatgcc-aacgcccatcatgcagggcatgcgtgcta 143 |||||||||| ||| ||||||| || |||| |||||||||||||||||||| Sbjct: 2169 aaatacactcttaatttgatgccaaatacccaacatgcagggcatgcgtgcta 2117
>ref|XM_474246.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1545 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 439 gttcacggtcgccgtcgccatctcccacgcgtcgaggctggacac 483 ||||||||||||||| |||||||||||||| ||||| ||||||| Sbjct: 1509 gttcacggtcgccgtggccatctcccacgcctcgagcttggacac 1465
>ref|XM_450319.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2098 Score = 58.0 bits (29), Expect = 3e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 437 acgttcacggtcgccgtcgccatctcccacgcgtcgaggctggacaccttgacggcgccg 496 ||||| |||||||||||||||| |||||||| || || ||| |||||| |||||| || Sbjct: 1843 acgttgacggtcgccgtcgccaggtcccacgcctccagcttggccaccttaacggcgtcg 1784 Query: 497 gtgccgttgttgaacac 513 | |||||||||||||| Sbjct: 1783 ctcccgttgttgaacac 1767
>emb|AL606646.3|OSJN00091 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0087O24, complete sequence Length = 146168 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 439 gttcacggtcgccgtcgccatctcccacgcgtcgaggctggacac 483 ||||||||||||||| |||||||||||||| ||||| ||||||| Sbjct: 28897 gttcacggtcgccgtggccatctcccacgcctcgagcttggacac 28941
>gb|AY575555.1| Oryza sativa (indica cultivar-group) cultivar IR64 cell wall invertase 8 mRNA, partial cds Length = 348 Score = 58.0 bits (29), Expect = 3e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 437 acgttcacggtcgccgtcgccatctcccacgcgtcgaggctggacaccttgacggcgccg 496 ||||| |||||||||||||||| |||||||| || || ||| |||||| |||||| || Sbjct: 217 acgttgacggtcgccgtcgccaggtcccacgcctccagcttggccaccttaacggcgtcg 158 Query: 497 gtgccgttgttgaacac 513 | |||||||||||||| Sbjct: 157 ctcccgttgttgaacac 141
>gb|AY575553.1| Oryza sativa (indica cultivar-group) cultivar IR64 cell wall invertase 6-like mRNA, partial sequence Length = 506 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 439 gttcacggtcgccgtcgccatctcccacgcgtcgaggctggacac 483 ||||||||||||||| |||||||||||||| ||||| ||||||| Sbjct: 436 gttcacggtcgccgtggccatctcccacgcctcgagcttggacac 392
>gb|AY578164.1| Oryza sativa (japonica cultivar-group) cell-wall invertase 7 mRNA, complete cds Length = 2076 Score = 58.0 bits (29), Expect = 3e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 437 acgttcacggtcgccgtcgccatctcccacgcgtcgaggctggacaccttgacggcgccg 496 ||||| |||||||||||||||| |||||||| || || ||| |||||| |||||| || Sbjct: 1821 acgttgacggtcgccgtcgccaggtcccacgcctccagcttggccaccttaacggcgtcg 1762 Query: 497 gtgccgttgttgaacac 513 | |||||||||||||| Sbjct: 1761 ctcccgttgttgaacac 1745
>gb|AY578162.1| Oryza sativa (japonica cultivar-group) cell-wall invertase 5 mRNA, complete cds Length = 1731 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 439 gttcacggtcgccgtcgccatctcccacgcgtcgaggctggacac 483 ||||||||||||||| |||||||||||||| ||||| ||||||| Sbjct: 1545 gttcacggtcgccgtggccatctcccacgcctcgagcttggacac 1501
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 439 gttcacggtcgccgtcgccatctcccacgcgtcgaggctggacac 483 ||||||||||||||| |||||||||||||| ||||| ||||||| Sbjct: 33978000 gttcacggtcgccgtggccatctcccacgcctcgagcttggacac 33978044
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 58.0 bits (29), Expect = 3e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 437 acgttcacggtcgccgtcgccatctcccacgcgtcgaggctggacaccttgacggcgccg 496 ||||| |||||||||||||||| |||||||| || || ||| |||||| |||||| || Sbjct: 4116475 acgttgacggtcgccgtcgccaggtcccacgcctccagcttggccaccttaacggcgtcg 4116416 Query: 497 gtgccgttgttgaacac 513 | |||||||||||||| Sbjct: 4116415 ctcccgttgttgaacac 4116399 Score = 50.1 bits (25), Expect = 0.007 Identities = 64/77 (83%) Strand = Plus / Minus Query: 437 acgttcacggtcgccgtcgccatctcccacgcgtcgaggctggacaccttgacggcgccg 496 ||||| |||||||||||||||| |||||||| || || ||| |||||| ||| || || Sbjct: 4144369 acgttgacggtcgccgtcgccaggtcccacgcctccagcttggccaccttaacgtcgtcg 4144310 Query: 497 gtgccgttgttgaacac 513 | |||||||||||||| Sbjct: 4144309 ctcccgttgttgaacac 4144293
>dbj|AP005738.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0066C12 Length = 168874 Score = 58.0 bits (29), Expect = 3e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 437 acgttcacggtcgccgtcgccatctcccacgcgtcgaggctggacaccttgacggcgccg 496 ||||| |||||||||||||||| |||||||| || || ||| |||||| |||||| || Sbjct: 99956 acgttgacggtcgccgtcgccaggtcccacgcctccagcttggccaccttaacggcgtcg 99897 Query: 497 gtgccgttgttgaacac 513 | |||||||||||||| Sbjct: 99896 ctcccgttgttgaacac 99880 Score = 50.1 bits (25), Expect = 0.007 Identities = 64/77 (83%) Strand = Plus / Minus Query: 437 acgttcacggtcgccgtcgccatctcccacgcgtcgaggctggacaccttgacggcgccg 496 ||||| |||||||||||||||| |||||||| || || ||| |||||| ||| || || Sbjct: 127850 acgttgacggtcgccgtcgccaggtcccacgcctccagcttggccaccttaacgtcgtcg 127791 Query: 497 gtgccgttgttgaacac 513 | |||||||||||||| Sbjct: 127790 ctcccgttgttgaacac 127774
>dbj|AK069080.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004I08, full insert sequence Length = 2101 Score = 58.0 bits (29), Expect = 3e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 437 acgttcacggtcgccgtcgccatctcccacgcgtcgaggctggacaccttgacggcgccg 496 ||||| |||||||||||||||| |||||||| || || ||| |||||| |||||| || Sbjct: 1846 acgttgacggtcgccgtcgccaggtcccacgcctccagcttggccaccttaacggcgtcg 1787 Query: 497 gtgccgttgttgaacac 513 | |||||||||||||| Sbjct: 1786 ctcccgttgttgaacac 1770
>gb|AF155121.1|AF155121 Oryza sativa subsp. indica apoplastic invertase (INV1) gene, complete cds Length = 7783 Score = 58.0 bits (29), Expect = 3e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 437 acgttcacggtcgccgtcgccatctcccacgcgtcgaggctggacaccttgacggcgccg 496 ||||| |||||||||||||||| |||||||| || || ||| |||||| |||||| || Sbjct: 6930 acgttgacggtcgccgtcgccaggtcccacgcctccagcttggccaccttcacggcgtcg 6871 Query: 497 gtgccgttgttgaacac 513 | |||||||||||||| Sbjct: 6870 ctcccgttgttgaacac 6854
>gb|AY578165.1| Oryza sativa (japonica cultivar-group) cell-wall invertase 8 pseudogene mRNA, complete sequence Length = 1353 Score = 50.1 bits (25), Expect = 0.007 Identities = 64/77 (83%) Strand = Plus / Minus Query: 437 acgttcacggtcgccgtcgccatctcccacgcgtcgaggctggacaccttgacggcgccg 496 ||||| |||||||||||||||| |||||||| || || ||| |||||| ||| || || Sbjct: 1283 acgttgacggtcgccgtcgccaggtcccacgcctccagcttggccaccttaacgtcgtcg 1224 Query: 497 gtgccgttgttgaacac 513 | |||||||||||||| Sbjct: 1223 ctcccgttgttgaacac 1207
>gb|AC113312.7| Mus musculus chromosome 7, clone RP23-440K7, complete sequence Length = 215675 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Plus Query: 72 tgacacccgttttcaccttggaaata 97 |||||||| ||||||||||||||||| Sbjct: 191026 tgacaccccttttcaccttggaaata 191051
>gb|AC158345.8| Mus musculus chromosome 7, clone RP23-271M19, complete sequence Length = 188354 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 72 tgacacccgttttcaccttggaaata 97 |||||||| ||||||||||||||||| Sbjct: 130930 tgacaccccttttcaccttggaaata 130905
>gb|AE005048.1| Halobacterium sp. NRC-1 section 79 of 170 of the complete genome Length = 10225 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Plus Query: 399 cgctcaccgagctcgccgcgatcagc 424 ||||| |||||||||||||||||||| Sbjct: 1002 cgctcgccgagctcgccgcgatcagc 1027
>gb|AC147153.2| Mus musculus chromosome y clone RP24-373C15, complete sequence Length = 147194 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 175 atcaaaaccttccaacaccta 195 ||||||||||||||||||||| Sbjct: 138903 atcaaaaccttccaacaccta 138923
>ref|XM_754164.1| Ustilago maydis 521 hypothetical protein (UM03110.1) partial mRNA Length = 1521 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 453 tcgccatctcccacgcgtcgaggct 477 ||||||||||||||| ||||||||| Sbjct: 136 tcgccatctcccacgggtcgaggct 160
>gb|AC009525.3| Arabidopsis thaliana chromosome I BAC F22D16 genomic sequence, complete sequence Length = 100239 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 18 tatagatttgaatagtattattttg 42 |||| |||||||||||||||||||| Sbjct: 93375 tatacatttgaatagtattattttg 93351
>gb|AC139209.10| Mus musculus chromosome 15, clone RP23-153G2, complete sequence Length = 211178 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 185 tccaacacctaaacacaaata 205 ||||||||||||||||||||| Sbjct: 109259 tccaacacctaaacacaaata 109239
>emb|AL590463.1|SCO590463 Streptomyces coelicolor plasmid SCP1; segment 1/2 Length = 178000 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 415 cgcgatcagcccgtcggggag 435 ||||||||||||||||||||| Sbjct: 153431 cgcgatcagcccgtcggggag 153411
>emb|AL645544.16| Mouse DNA sequence from clone RP23-327M13 on chromosome 1 Contains the gene for an ortholog of human amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 19 (ALS2CR19), the 3' end of a novel gene and two CpG islands, complete sequence Length = 216046 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 175 atcaaaaccttccaacaccta 195 ||||||||||||||||||||| Sbjct: 201195 atcaaaaccttccaacaccta 201215
>emb|AL645946.6| Mouse DNA sequence from clone DN-276O13 on chromosome 1 Contains part of the ortholog of human amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 19 ALS2CR19 (2810455B10RIK 6030439I24RIK 2010002N16RIK), and the 3' end of a novel gene (4930448K12RIK 4930412B09RIK), complete sequence Length = 140936 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 175 atcaaaaccttccaacaccta 195 ||||||||||||||||||||| Sbjct: 128291 atcaaaaccttccaacaccta 128311
>gb|AC161575.3| Mus musculus chromosome 15, clone RP24-264K6, complete sequence Length = 164213 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 185 tccaacacctaaacacaaata 205 ||||||||||||||||||||| Sbjct: 109329 tccaacacctaaacacaaata 109309
>gb|AC022521.4|AC022521 Arabidopsis thaliana chromosome I BAC T14P4 genomic sequence, complete sequence Length = 121668 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 18 tatagatttgaatagtattattttg 42 |||| |||||||||||||||||||| Sbjct: 18736 tatacatttgaatagtattattttg 18712
>ref|NM_129125.1| Arabidopsis thaliana DNA binding / transcription factor AT2G35700 mRNA, complete cds Length = 585 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 447 tcgccgtcgccatctcccac 466 |||||||||||||||||||| Sbjct: 415 tcgccgtcgccatctcccac 434
>gb|AC162379.2| Mus musculus BAC clone RP23-132A15 from chromosome 12, complete sequence Length = 238126 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 gaaatacactctaaactgat 111 |||||||||||||||||||| Sbjct: 216887 gaaatacactctaaactgat 216906
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 489 cggcgccggtgccgttgttg 508 |||||||||||||||||||| Sbjct: 3924131 cggcgccggtgccgttgttg 3924112
>gb|AY560845.1| Arabidopsis thaliana putative AP2/EREBP transcription factor (At2g35700) mRNA, complete cds Length = 585 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 447 tcgccgtcgccatctcccac 466 |||||||||||||||||||| Sbjct: 415 tcgccgtcgccatctcccac 434
>gb|AC102105.8| Mus musculus chromosome 12, clone RP23-89G24, complete sequence Length = 188853 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 gaaatacactctaaactgat 111 |||||||||||||||||||| Sbjct: 185195 gaaatacactctaaactgat 185176
>gb|DQ446600.1| Arabidopsis thaliana clone pENTR221-At2g35700 AP2 domain-containing transcription factor (At2g35700) mRNA, complete cds Length = 585 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 447 tcgccgtcgccatctcccac 466 |||||||||||||||||||| Sbjct: 415 tcgccgtcgccatctcccac 434
>emb|AL450328.6| Human DNA sequence from clone RP11-193H22 on chromosome 6, complete sequence Length = 119389 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 aaacacaaatattcctacaa 214 |||||||||||||||||||| Sbjct: 66420 aaacacaaatattcctacaa 66439
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 412 cgccgcgatcagcccgtcgg 431 |||||||||||||||||||| Sbjct: 351275 cgccgcgatcagcccgtcgg 351256
>gb|AC134380.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNPb106I21, complete sequence Length = 6207 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 ggtcgccgtcgccatctccc 464 |||||||||||||||||||| Sbjct: 2271 ggtcgccgtcgccatctccc 2252
>emb|BX842583.1| Mycobacterium tuberculosis H37Rv complete genome; segment 12/13 Length = 349606 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 489 cggcgccggtgccgttgttg 508 |||||||||||||||||||| Sbjct: 113122 cggcgccggtgccgttgttg 113103
>emb|BX571869.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment 11/17 Length = 349284 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 aatatataccttatagattt 26 |||||||||||||||||||| Sbjct: 66943 aatatataccttatagattt 66924
>emb|BX248346.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 13/14 Length = 316050 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 489 cggcgccggtgccgttgttg 508 |||||||||||||||||||| Sbjct: 124849 cggcgccggtgccgttgttg 124830
>gb|AC069256.15| Homo sapiens 3 BAC RP11-445G6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 149986 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 228 cagcatcctagaatcctccttctg 251 ||||||| |||||||||||||||| Sbjct: 115525 cagcatcgtagaatcctccttctg 115548
>gb|AC092944.14| Homo sapiens 3 BAC RP11-550I24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 184688 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 228 cagcatcctagaatcctccttctg 251 ||||||| |||||||||||||||| Sbjct: 38014 cagcatcgtagaatcctccttctg 37991
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 481 caccttgacggcgccggtgccgttgttg 508 |||||||| ||||||||||| ||||||| Sbjct: 1059373 caccttgatggcgccggtgcggttgttg 1059346
>gb|AY028431.1| Burkholderia cepacia genomovar III putative type III secretion gene cluster, complete sequence Length = 34600 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 485 ttgacggcgccggtgccgtt 504 |||||||||||||||||||| Sbjct: 29045 ttgacggcgccggtgccgtt 29026
>gb|AC006068.4| Arabidopsis thaliana chromosome 2 clone T20F21 map ve016, complete sequence Length = 107436 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 447 tcgccgtcgccatctcccac 466 |||||||||||||||||||| Sbjct: 38518 tcgccgtcgccatctcccac 38499
>gb|AC103986.4| Homo sapiens, clone RP11-197M8, complete sequence Length = 160981 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 attattttgtacaactcaac 53 |||||||||||||||||||| Sbjct: 47832 attattttgtacaactcaac 47813
>gb|AC148700.1| Macaca mulatta Major Histocompatibility Complex BAC MMU281E18, complete sequence Length = 188725 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 167 ttgacagtatcaaaaccttccaac 190 ||||| |||||||||||||||||| Sbjct: 123024 ttgactgtatcaaaaccttccaac 123001
>gb|AC148661.1| Macaca mulatta Major Histocompatibility Complex BAC MMU007H18, complete sequence Length = 215614 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 167 ttgacagtatcaaaaccttccaac 190 ||||| |||||||||||||||||| Sbjct: 181159 ttgactgtatcaaaaccttccaac 181136
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 481 caccttgacggcgccggtgccgttgttg 508 |||||||| ||||||||||| ||||||| Sbjct: 1092898 caccttgatggcgccggtgcggttgttg 1092871
>emb|CR381643.18| Zebrafish DNA sequence from clone DKEY-39N1 in linkage group 8, complete sequence Length = 217745 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 ccaacacctaaacacaaata 205 |||||||||||||||||||| Sbjct: 10136 ccaacacctaaacacaaata 10155 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,560,253 Number of Sequences: 3902068 Number of extensions: 4560253 Number of successful extensions: 82714 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 82356 Number of HSP's gapped (non-prelim): 357 length of query: 513 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 490 effective length of database: 17,143,297,704 effective search space: 8400215874960 effective search space used: 8400215874960 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
