Clone Name | rbart36b12 |
---|---|
Clone Library Name | barley_pub |
>dbj|AB219366.1| Hordeum vulgare HvPIP2;1 mRNA for PIP aquaporin, complete cds Length = 1318 Score = 654 bits (330), Expect = 0.0 Identities = 347/355 (97%) Strand = Plus / Minus Query: 68 gagcgagcaaaagaaaagcacacttggaagaaacagcagcaagcaaacatggcgaactcc 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1261 gagcgagcaaaagaaaagcacacttggaagaaacagcagcaagcaaacatggcgaactcc 1202 Query: 128 ggaaacacgtcgacatacgaatggacggtcacatcaacatatgcacaagccgaggaacgg 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1201 ggaaacacgtcgacatacgaatggacggtcacatcaacatatgcacaagccgaggaacgg 1142 Query: 188 tagcagcagatgatgcgaagactggagccactgaaccaagcggtgggatccagcagccat 247 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1141 tagcagcagatgatgcgaagactggagccactgaaccaagcggtgggatcgagcagccat 1082 Query: 248 agcgcattggctggaggcggccttcttcttcgcacatatctacacttcagtgnnnnnnnt 307 |||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 1081 agcgcattggctggaggcggccttcttcttcgcacatatctacacttcagtgccccccct 1022 Query: 308 cgcgcgtccggccggagctacgggcgacttagttgctcctgtaggacccgagcttggcgg 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1021 cgcgcgtccggccggagctacgggcgacttagttgctcctgtaggacccgagcttggcgg 962 Query: 368 cgctggccctcagcacatactggtggtaggcggcggcaatggcggcgccgatcag 422 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 961 cgctggccctcagcacatactggtggtaggcggcggcaatggcggcgccgatcag 907
>dbj|AB009307.1| Hordeum vulgare HvPIP2;1 mRNA, complete cd Length = 1251 Score = 654 bits (330), Expect = 0.0 Identities = 347/355 (97%) Strand = Plus / Minus Query: 68 gagcgagcaaaagaaaagcacacttggaagaaacagcagcaagcaaacatggcgaactcc 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1181 gagcgagcaaaagaaaagcacacttggaagaaacagcagcaagcaaacatggcgaactcc 1122 Query: 128 ggaaacacgtcgacatacgaatggacggtcacatcaacatatgcacaagccgaggaacgg 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1121 ggaaacacgtcgacatacgaatggacggtcacatcaacatatgcacaagccgaggaacgg 1062 Query: 188 tagcagcagatgatgcgaagactggagccactgaaccaagcggtgggatccagcagccat 247 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1061 tagcagcagatgatgcgaagactggagccactgaaccaagcggtgggatcgagcagccat 1002 Query: 248 agcgcattggctggaggcggccttcttcttcgcacatatctacacttcagtgnnnnnnnt 307 |||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 1001 agcgcattggctggaggcggccttcttcttcgcacatatctacacttcagtgccccccct 942 Query: 308 cgcgcgtccggccggagctacgggcgacttagttgctcctgtaggacccgagcttggcgg 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 941 cgcgcgtccggccggagctacgggcgacttagttgctcctgtaggacccgagcttggcgg 882 Query: 368 cgctggccctcagcacatactggtggtaggcggcggcaatggcggcgccgatcag 422 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 881 cgctggccctcagcacatactggtggtaggcggcggcaatggcggcgccgatcag 827 Score = 52.0 bits (26), Expect = 0.001 Identities = 32/34 (94%) Strand = Plus / Minus Query: 1 aaacggtaccaagtgtttgattaccaaattctcc 34 |||||||||||| | ||||||||||||||||||| Sbjct: 1244 aaacggtaccaattctttgattaccaaattctcc 1211
>gb|AF139815.1|AF139815 Triticum aestivum plasma membrane intrinsic protein 2 (PIP2) mRNA, complete cds Length = 1235 Score = 301 bits (152), Expect = 1e-78 Identities = 204/220 (92%), Gaps = 6/220 (2%) Strand = Plus / Minus Query: 84 agcacacttggaagaaacagcagcaagcaaacatggcgaactccggaaacacgtcgacat 143 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct: 1145 agcacacttggaagaaacagcagcaagcaaacatggcgaactccggaa-cacgtcgacgt 1087 Query: 144 acgaatggacggtcacatcaacatatgcacaagccgaggaacggtagcagcagatgatgc 203 ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| Sbjct: 1086 acgaatggacggtcacatcgacatatgcacaagccgaggaacggtagcagctgatgatgc 1027 Query: 204 gaagactggagccactga-----accaagcggtgggatccagcagccatagcgcattggc 258 ||||||||||||||||| || ||| |||||||| |||| |||||||||||| || Sbjct: 1026 aaagactggagccactgaacaggacaaaggtgtgggatcgagcaaccatagcgcatttgc 967 Query: 259 tggaggcggccttcttcttcgcacatatctacacttcagt 298 |||||||||||||||||||||||||||||||||||||||| Sbjct: 966 tggaggcggccttcttcttcgcacatatctacacttcagt 927 Score = 178 bits (90), Expect = 1e-41 Identities = 105/110 (95%) Strand = Plus / Minus Query: 313 gtccggccggagctacgggcgacttagttgctcctgtaggacccgagcttggcggcgctg 372 ||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||| Sbjct: 928 gtccggccggagcgacggccggcttagttgctcctgtaggacccgagcttggcggcgctg 869 Query: 373 gccctcagcacatactggtggtaggcggcggcaatggcggcgccgatcag 422 ||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct: 868 gccctcagcacgtactggtggtaggcggcggcgatggcggcgccgatcag 819
>ref|XM_466869.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1214 Score = 143 bits (72), Expect = 5e-31 Identities = 81/84 (96%) Strand = Plus / Minus Query: 339 gttgctcctgtaggacccgagcttggcggcgctggccctcagcacatactggtggtaggc 398 |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 928 gttgctccggtaggacccgagcttggcggcgctggccctcagcacgtactggtggtaggc 869 Query: 399 ggcggcaatggcggcgccgatcag 422 |||||| ||||||||||||||||| Sbjct: 868 ggcggcgatggcggcgccgatcag 845
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 143 bits (72), Expect = 5e-31 Identities = 81/84 (96%) Strand = Plus / Minus Query: 339 gttgctcctgtaggacccgagcttggcggcgctggccctcagcacatactggtggtaggc 398 |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 25184709 gttgctccggtaggacccgagcttggcggcgctggccctcagcacgtactggtggtaggc 25184650 Query: 399 ggcggcaatggcggcgccgatcag 422 |||||| ||||||||||||||||| Sbjct: 25184649 ggcggcgatggcggcgccgatcag 25184626 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 398 cggcggcaatggcggcgccgatcag 422 |||||||||||||||||||| |||| Sbjct: 10937050 cggcggcaatggcggcgccgctcag 10937026 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 gcggcggcaatggcggcgcc 416 |||||||||||||||||||| Sbjct: 261396 gcggcggcaatggcggcgcc 261415
>dbj|AP006168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1469H02 Length = 136602 Score = 143 bits (72), Expect = 5e-31 Identities = 81/84 (96%) Strand = Plus / Minus Query: 339 gttgctcctgtaggacccgagcttggcggcgctggccctcagcacatactggtggtaggc 398 |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 85102 gttgctccggtaggacccgagcttggcggcgctggccctcagcacgtactggtggtaggc 85043 Query: 399 ggcggcaatggcggcgccgatcag 422 |||||| ||||||||||||||||| Sbjct: 85042 ggcggcgatggcggcgccgatcag 85019
>dbj|AK061782.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-E03, full insert sequence Length = 1214 Score = 143 bits (72), Expect = 5e-31 Identities = 81/84 (96%) Strand = Plus / Minus Query: 339 gttgctcctgtaggacccgagcttggcggcgctggccctcagcacatactggtggtaggc 398 |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 928 gttgctccggtaggacccgagcttggcggcgctggccctcagcacgtactggtggtaggc 869 Query: 399 ggcggcaatggcggcgccgatcag 422 |||||| ||||||||||||||||| Sbjct: 868 ggcggcgatggcggcgccgatcag 845
>gb|BT018182.1| Zea mays clone EL01N0557H10.c mRNA sequence Length = 1215 Score = 127 bits (64), Expect = 3e-26 Identities = 79/84 (94%) Strand = Plus / Minus Query: 339 gttgctcctgtaggacccgagcttggcggcgctggccctcagcacatactggtggtaggc 398 |||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||| Sbjct: 956 gttgctccggtaggacccgagcttggtggcgctggccctcagcacgtactggtggtaggc 897 Query: 399 ggcggcaatggcggcgccgatcag 422 |||||| ||||||||||| ||||| Sbjct: 896 ggcggcgatggcggcgccaatcag 873
>gb|AF326494.1|AF326494 Zea mays plasma membrane integral protein ZmPIP2-4 mRNA, complete cds Length = 1171 Score = 127 bits (64), Expect = 3e-26 Identities = 79/84 (94%) Strand = Plus / Minus Query: 339 gttgctcctgtaggacccgagcttggcggcgctggccctcagcacatactggtggtaggc 398 |||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||| Sbjct: 948 gttgctccggtaggacccgagcttggtggcgctggccctcagcacgtactggtggtaggc 889 Query: 399 ggcggcaatggcggcgccgatcag 422 |||||| ||||||||||| ||||| Sbjct: 888 ggcggcgatggcggcgccaatcag 865
>gb|AF326493.1|AF326493 Zea mays plasma membrane integral protein ZmPIP2-3 mRNA, complete cds Length = 1156 Score = 127 bits (64), Expect = 3e-26 Identities = 79/84 (94%) Strand = Plus / Minus Query: 339 gttgctcctgtaggacccgagcttggcggcgctggccctcagcacatactggtggtaggc 398 |||||||| ||||||||||||||||| ||||||||| |||||||| |||||||||||||| Sbjct: 938 gttgctccggtaggacccgagcttggtggcgctggctctcagcacgtactggtggtaggc 879 Query: 399 ggcggcaatggcggcgccgatcag 422 |||||| ||||||||||||||||| Sbjct: 878 ggcggcgatggcggcgccgatcag 855
>gb|AY109332.1| Zea mays CL502_5 mRNA sequence Length = 1969 Score = 127 bits (64), Expect = 3e-26 Identities = 79/84 (94%) Strand = Plus / Minus Query: 339 gttgctcctgtaggacccgagcttggcggcgctggccctcagcacatactggtggtaggc 398 |||||||| ||||||||||||||||| ||||||||| |||||||| |||||||||||||| Sbjct: 366 gttgctccggtaggacccgagcttggtggcgctggctctcagcacgtactggtggtaggc 307 Query: 399 ggcggcaatggcggcgccgatcag 422 |||||| ||||||||||||||||| Sbjct: 306 ggcggcgatggcggcgccgatcag 283
>ref|XM_473219.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 873 Score = 105 bits (53), Expect = 1e-19 Identities = 62/65 (95%) Strand = Plus / Minus Query: 355 ccgagcttggcggcgctggccctcagcacatactggtggtaggcggcggcaatggcggcg 414 |||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||| Sbjct: 848 ccgagcttggcggcgctggccctcaggacgtactggtggtaggcggcggcgatggcggcg 789 Query: 415 ccgat 419 ||||| Sbjct: 788 ccgat 784
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 105 bits (53), Expect = 1e-19 Identities = 62/65 (95%) Strand = Plus / Minus Query: 355 ccgagcttggcggcgctggccctcagcacatactggtggtaggcggcggcaatggcggcg 414 |||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||| Sbjct: 26074840 ccgagcttggcggcgctggccctcaggacgtactggtggtaggcggcggcgatggcggcg 26074781 Query: 415 ccgat 419 ||||| Sbjct: 26074780 ccgat 26074776
>emb|AL662958.3|OSJN00156 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019D11, complete sequence Length = 163039 Score = 105 bits (53), Expect = 1e-19 Identities = 62/65 (95%) Strand = Plus / Minus Query: 355 ccgagcttggcggcgctggccctcagcacatactggtggtaggcggcggcaatggcggcg 414 |||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||| Sbjct: 109167 ccgagcttggcggcgctggccctcaggacgtactggtggtaggcggcggcgatggcggcg 109108 Query: 415 ccgat 419 ||||| Sbjct: 109107 ccgat 109103
>gb|AY243802.1| Zea mays aquaporin (PIP2-5) mRNA, complete cds Length = 1104 Score = 91.7 bits (46), Expect = 2e-15 Identities = 58/62 (93%) Strand = Plus / Minus Query: 358 agcttggcggcgctggccctcagcacatactggtggtaggcggcggcaatggcggcgccg 417 |||||||||||||||||||||||||| ||||||||||| || ||||| |||||||||||| Sbjct: 833 agcttggcggcgctggccctcagcacgtactggtggtacgccgcggcgatggcggcgccg 774 Query: 418 at 419 || Sbjct: 773 at 772
>gb|AF130975.1|AF130975 Zea mays plasma membrane intrinsic protein (pip2-5) mRNA, complete cds Length = 1207 Score = 91.7 bits (46), Expect = 2e-15 Identities = 58/62 (93%) Strand = Plus / Minus Query: 358 agcttggcggcgctggccctcagcacatactggtggtaggcggcggcaatggcggcgccg 417 |||||||||||||||||||||||||| ||||||||||| || ||||| |||||||||||| Sbjct: 888 agcttggcggcgctggccctcagcacgtactggtggtacgccgcggcgatggcggcgccg 829 Query: 418 at 419 || Sbjct: 828 at 827
>dbj|AB219525.1| Hordeum vulgare HvPIP2;4 mRNA for PIP aquaporin isoform, complete cds Length = 1343 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Minus Query: 355 ccgagcttggcggcgctggccctcagcacatactggtggtaggcggcggcaatggcggcg 414 |||| ||||| |||||||||||||||||| ||||||||||| |||||| |||||||| Sbjct: 918 ccgaacttggtggcgctggccctcagcacgtactggtggtacaaggcggcgatggcggcc 859 Query: 415 ccgat 419 ||||| Sbjct: 858 ccgat 854
>ref|XM_479085.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1356 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 396 ggcggcggcaatggcggcgccg 417 |||||||||||||||||||||| Sbjct: 831 ggcggcggcaatggcggcgccg 852
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 396 ggcggcggcaatggcggcgccg 417 |||||||||||||||||||||| Sbjct: 24703073 ggcggcggcaatggcggcgccg 24703052
>dbj|AP005175.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0040H10 Length = 132919 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 396 ggcggcggcaatggcggcgccg 417 |||||||||||||||||||||| Sbjct: 59010 ggcggcggcaatggcggcgccg 58989
>gb|CP000032.1| Silicibacter pomeroyi DSS-3 plasmid megaplasmid, complete sequence Length = 491611 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 399 ggcggcaatggcggcgccgat 419 ||||||||||||||||||||| Sbjct: 64368 ggcggcaatggcggcgccgat 64388
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 397 gcggcggcaatggcggcgccg 417 ||||||||||||||||||||| Sbjct: 1191824 gcggcggcaatggcggcgccg 1191804 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 397 gcggcggcaatggcggcgccg 417 ||||||||||||||||||||| Sbjct: 1189908 gcggcggcaatggcggcgccg 1189888 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 398 cggcggcaatggcggcgccg 417 |||||||||||||||||||| Sbjct: 1385182 cggcggcaatggcggcgccg 1385163
>gb|AC185988.2| Pan troglodytes BAC clone CH251-398L15 from chromosome 6, complete sequence Length = 148530 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 77 aaagaaaagcacacttggaagaaac 101 |||||||| |||||||||||||||| Sbjct: 110966 aaagaaaaacacacttggaagaaac 110990
>emb|AL590236.8| Human DNA sequence from clone RP11-145I17 on chromosome Xq21.1-21.33, complete sequence Length = 79387 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 77 aaagaaaagcacacttggaagaaac 101 ||||||||| ||||||||||||||| Sbjct: 40318 aaagaaaagtacacttggaagaaac 40342
>emb|AL353153.18| Human DNA sequence from clone RP5-1000G17 on chromosome 6, complete sequence Length = 95430 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 77 aaagaaaagcacacttggaagaaac 101 |||||||| |||||||||||||||| Sbjct: 35576 aaagaaaaacacacttggaagaaac 35552
>emb|BX842575.1| Mycobacterium tuberculosis H37Rv complete genome; segment 4/13 Length = 349306 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 397 gcggcggcaatggcggcgccg 417 ||||||||||||||||||||| Sbjct: 157799 gcggcggcaatggcggcgccg 157779 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 397 gcggcggcaatggcggcgccg 417 ||||||||||||||||||||| Sbjct: 156075 gcggcggcaatggcggcgccg 156055
>emb|BX248337.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 4/14 Length = 327650 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 397 gcggcggcaatggcggcgccg 417 ||||||||||||||||||||| Sbjct: 205946 gcggcggcaatggcggcgccg 205926 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 397 gcggcggcaatggcggcgccg 417 ||||||||||||||||||||| Sbjct: 203322 gcggcggcaatggcggcgccg 203302
>gb|AC113580.3| Tetraodon nigroviridis clone GSTNA-28E1, complete sequence Length = 127223 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 154 ggtcacatcaacatatgcaca 174 ||||||||||||||||||||| Sbjct: 33938 ggtcacatcaacatatgcaca 33958
>gb|AC119070.3| Homo sapiens BAC clone RP11-164M13 from 4, complete sequence Length = 34461 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 78 aagaaaagcacacttggaaga 98 ||||||||||||||||||||| Sbjct: 18083 aagaaaagcacacttggaaga 18063
>dbj|AP004168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1756_H07 Length = 217205 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 398 cggcggcaatggcggcgccgatcag 422 |||||||||||||||||||| |||| Sbjct: 143249 cggcggcaatggcggcgccgctcag 143225
>dbj|AK120386.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073J03, full insert sequence Length = 616 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 339 gttgctcctgtaggacccgagcttg 363 |||||||| |||||||||||||||| Sbjct: 288 gttgctccggtaggacccgagcttg 264
>gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0063D09 map S1559, complete sequence Length = 190721 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 392 ggtaggcggcggcaatggcg 411 |||||||||||||||||||| Sbjct: 55416 ggtaggcggcggcaatggcg 55397
>gb|AC010848.14| Drosophila melanogaster clone BACR20N11, complete sequence Length = 175978 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 aggcggcggcaatggcggcg 414 |||||||||||||||||||| Sbjct: 76081 aggcggcggcaatggcggcg 76062
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 aggcggcggcaatggcggcg 414 |||||||||||||||||||| Sbjct: 453937 aggcggcggcaatggcggcg 453956
>emb|AL392086.14| Human DNA sequence from clone RP11-799O21 on chromosome 10 Contains the 3' end of a novel gene and a novel gene, complete sequence Length = 220225 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 ttgctcctgtaggacccgag 359 |||||||||||||||||||| Sbjct: 100729 ttgctcctgtaggacccgag 100748
>emb|AL355485.9| Human DNA sequence from clone RP11-240M20 on chromosome 13, complete sequence Length = 149684 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 tcacatcaacatatgcacaa 175 |||||||||||||||||||| Sbjct: 78375 tcacatcaacatatgcacaa 78394
>emb|AL354720.14| Human DNA sequence from clone RP11-505F3 on chromosome 13 Contains the 3' end of the gene for progesterone-induced blocking factor 1 (PIBF1), a proteasome (prosome, macropain) 26S subunit, non-ATPase, 10 (PSMD10) pseudogene, the KLF5 gene for Kruppel-like factor 5 (intestinal)(CKLF, IKLF, BTEB2), a fatty acid binding protein 5 (psoriasis-associated) (FABP5)(EFABP, E-FABP, PAFABP, PA-FABP) pseudogene and a CpG island, complete sequence Length = 199882 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 209 ctggagccactgaaccaagc 228 |||||||||||||||||||| Sbjct: 183049 ctggagccactgaaccaagc 183030
>emb|BX842576.1| Mycobacterium tuberculosis H37Rv complete genome; segment 5/13 Length = 348264 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 398 cggcggcaatggcggcgccg 417 |||||||||||||||||||| Sbjct: 2651 cggcggcaatggcggcgccg 2632
>emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete genome; segment 5/16 Length = 348624 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 385 tactggtggtaggcggcggc 404 |||||||||||||||||||| Sbjct: 74741 tactggtggtaggcggcggc 74722
>emb|BX640426.1| Bordetella parapertussis strain 12822, complete genome; segment 4/14 Length = 348866 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 385 tactggtggtaggcggcggc 404 |||||||||||||||||||| Sbjct: 187779 tactggtggtaggcggcggc 187760
>emb|BX248338.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 5/14 Length = 299450 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 398 cggcggcaatggcggcgccg 417 |||||||||||||||||||| Sbjct: 72338 cggcggcaatggcggcgccg 72319
>gb|BC061498.1| Mus musculus SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, mRNA (cDNA clone MGC:70264 IMAGE:5251562), complete cds Length = 2386 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 310 cgcgtccggccggagctacgggcg 333 ||||||||||||||||| |||||| Sbjct: 5 cgcgtccggccggagctgcgggcg 28
>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB Length = 1683333 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 cggcggcaatggcggcgccg 417 |||||||||||||||||||| Sbjct: 1084234 cggcggcaatggcggcgccg 1084253
>gb|AC090433.10| Chlamydomonas reinhardtii clone cr-19b23, complete sequence Length = 118183 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 ggcggcggcaatggcggcgc 415 |||||||||||||||||||| Sbjct: 30764 ggcggcggcaatggcggcgc 30745
>ref|NM_167736.1| Drosophila melanogaster CG32521-RC, transcript variant C (CG32521), mRNA Length = 1220 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 aggcggcggcaatggcggcg 414 |||||||||||||||||||| Sbjct: 923 aggcggcggcaatggcggcg 942
>gb|AC010197.7| Homo sapiens 12p12p11-37.2-54.4 BAC RP11-92H16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 151011 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 aagaaaagcacacttggaag 97 |||||||||||||||||||| Sbjct: 79101 aagaaaagcacacttggaag 79120
>gb|AC009093.10| Homo sapiens chromosome 16 clone RP11-426C22, complete sequence Length = 207997 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 345 cctgtaggacccgagcttggcggc 368 |||| ||||||||||||||||||| Sbjct: 193419 cctgcaggacccgagcttggcggc 193396
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 ggcggcggcaatggcggcgc 415 |||||||||||||||||||| Sbjct: 23921998 ggcggcggcaatggcggcgc 23921979 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 396 ggcggcggcaatggcggcgc 415 |||||||||||||||||||| Sbjct: 18401970 ggcggcggcaatggcggcgc 18401989
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 392 ggtaggcggcggcaatggcg 411 |||||||||||||||||||| Sbjct: 3687744 ggtaggcggcggcaatggcg 3687725
>gb|AC138512.4| Homo sapiens chromosome 16 clone RP11-93B18, complete sequence Length = 159064 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 345 cctgtaggacccgagcttggcggc 368 |||| ||||||||||||||||||| Sbjct: 53537 cctgcaggacccgagcttggcggc 53560
>gb|AC009490.10| Homo sapiens BAC clone RP11-355A23 from 2, complete sequence Length = 158692 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 77 aaagaaaagcacacttggaagaaa 100 ||||||||| |||||||||||||| Sbjct: 56776 aaagaaaagtacacttggaagaaa 56799
>gb|AF305502.1|AF305502 Myoxocephalus scorpius skin-type antifreeze polypeptide AFP-2 mRNA, complete cds Length = 1027 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 aggcggcggcaatggcggcg 414 |||||||||||||||||||| Sbjct: 91 aggcggcggcaatggcggcg 110
>gb|AC008041.5| Homo sapiens 3 BAC RPCI11-469J4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 178896 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 aggacccgagcttggcggcg 369 |||||||||||||||||||| Sbjct: 3614 aggacccgagcttggcggcg 3633
>gb|AF135398.1|AF135398 Thermus brockianus strain ITI360 putative galactoside binding protein (bdtE) gene, partial cds; and putative integral membrane protein (bdtF), putative integral membrane protein (bdtG), beta-galactosidase (bgaT), alpha-galactosidase (agaT), galactose-1-phosphate uridylyltransferase homolog (galT), glycerol kinase homolog (glpK), and glycerol dehydrogenase homolog (glpD) genes, complete cds Length = 10091 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 360 cttggcggcgctggccctca 379 |||||||||||||||||||| Sbjct: 2375 cttggcggcgctggccctca 2394
>dbj|AP004049.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1212_C06 Length = 110989 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 gcggcggcaatggcggcgcc 416 |||||||||||||||||||| Sbjct: 71371 gcggcggcaatggcggcgcc 71390
>dbj|AP006720.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, clone:OJA1212_C06 Length = 113554 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 gcggcggcaatggcggcgcc 416 |||||||||||||||||||| Sbjct: 73936 gcggcggcaatggcggcgcc 73955
>gb|AE003568.4| Drosophila melanogaster chromosome X, section 71 of 74 of the complete sequence Length = 315815 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 aggcggcggcaatggcggcg 414 |||||||||||||||||||| Sbjct: 4185 aggcggcggcaatggcggcg 4166
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 392 ggtaggcggcggcaatggcg 411 |||||||||||||||||||| Sbjct: 3696438 ggtaggcggcggcaatggcg 3696419
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 ggcggcggcaatggcggcgc 415 |||||||||||||||||||| Sbjct: 23850204 ggcggcggcaatggcggcgc 23850185 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 396 ggcggcggcaatggcggcgc 415 |||||||||||||||||||| Sbjct: 18328196 ggcggcggcaatggcggcgc 18328215
>emb|AL845344.4|CNS08CB6 Oryza sativa chromosome 12, . BAC OSJNBb0108O14 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 138585 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 396 ggcggcggcaatggcggcgc 415 |||||||||||||||||||| Sbjct: 53869 ggcggcggcaatggcggcgc 53888
>emb|AL731884.4|CNS08C8O Oryza sativa chromosome 12, . BAC OSJNBa0014A07 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 144767 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 396 ggcggcggcaatggcggcgc 415 |||||||||||||||||||| Sbjct: 51185 ggcggcggcaatggcggcgc 51204
>emb|AL928774.3|CNS08CC4 Oryza sativa chromosome 12, . BAC OSJNBa0078O17 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 176388 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 396 ggcggcggcaatggcggcgc 415 |||||||||||||||||||| Sbjct: 165398 ggcggcggcaatggcggcgc 165417
>gb|AC136837.1| Homo sapiens chromosome 16 clone RP11-483N11, complete sequence Length = 65756 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 345 cctgtaggacccgagcttggcggc 368 |||| ||||||||||||||||||| Sbjct: 34175 cctgcaggacccgagcttggcggc 34152 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,944,967 Number of Sequences: 3902068 Number of extensions: 2944967 Number of successful extensions: 62426 Number of sequences better than 10.0: 63 Number of HSP's better than 10.0 without gapping: 67 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61644 Number of HSP's gapped (non-prelim): 779 length of query: 422 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 400 effective length of database: 17,147,199,772 effective search space: 6858879908800 effective search space used: 6858879908800 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)