ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart36b09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TNR16_CHICK (P18519) Tumor necrosis factor receptor superfamily ... 28 4.9
2PEPX_LACDL (P40334) Xaa-Pro dipeptidyl-peptidase (EC 3.4.14.11) ... 28 8.4
3PEPX_LACDE (Q9Z5K9) Xaa-Pro dipeptidyl-peptidase (EC 3.4.14.11) ... 28 8.4

>TNR16_CHICK (P18519) Tumor necrosis factor receptor superfamily member 16|
           precursor (Low-affinity nerve growth factor receptor)
           (NGF receptor) (Gp80-LNGFR) (p75 ICD) (Low affinity
           neurotrophin receptor p75NTR)
          Length = 416

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +2

Query: 101 SNGECSPLQIAWTNHRPILLGS*CPASVATGLASSRG 211
           S+ EC  L   WT H P L GS  P  +     ++ G
Sbjct: 176 SDAECRDLHPRWTTHTPSLAGSDSPEPITRDPFNTEG 212



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>PEPX_LACDL (P40334) Xaa-Pro dipeptidyl-peptidase (EC 3.4.14.11) (X-Pro|
           dipeptidyl-peptidase) (X-prolyl-dipeptidyl
           aminopeptidase) (X-PDAP)
          Length = 792

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 153 MGLWFVHAICKGEHSPLEQFSSIML 79
           M LWFVH + + E+   EQ+  +M+
Sbjct: 528 MNLWFVHELLEVENGAYEQWPKVMI 552



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>PEPX_LACDE (Q9Z5K9) Xaa-Pro dipeptidyl-peptidase (EC 3.4.14.11) (X-Pro|
           dipeptidyl-peptidase) (X-prolyl-dipeptidyl
           aminopeptidase) (X-PDAP) (Fragment)
          Length = 786

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 153 MGLWFVHAICKGEHSPLEQFSSIML 79
           M LWFVH + + E+   EQ+  +M+
Sbjct: 522 MNLWFVHELLEVENGAYEQWPKVMI 546


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,623,121
Number of Sequences: 219361
Number of extensions: 534894
Number of successful extensions: 1046
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 80,573,946
effective HSP length: 49
effective length of database: 69,825,257
effective search space used: 1675806168
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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