ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart36b05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PKDRE_HUMAN (Q9NTG1) Polycystic kidney disease and receptor for ... 32 1.1
2Y2115_VIBPA (P46231) Hypothetical protein VP2115 (ORF3) 30 4.1
3HXK2_HUMAN (P52789) Hexokinase-2 (EC 2.7.1.1) (Hexokinase type I... 30 5.3
4VPS16_YEAST (Q03308) Vacuolar protein sorting-associated protein... 29 7.0

>PKDRE_HUMAN (Q9NTG1) Polycystic kidney disease and receptor for egg jelly-related|
            protein precursor (PKD and REJ homolog)
          Length = 2253

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 20/73 (27%), Positives = 41/73 (56%)
 Frame = +1

Query: 214  NLLDYALAFLEAIILPLIVRQTFVACFKFSDLKKFFPTRVSPVNFPPFHTSFQGLHLLER 393
            NLL++AL  +  +++ L +R+ F+A    + + +F+ +  +P +F PFH   Q  H++  
Sbjct: 1999 NLLNFALKCIFTVLIVLFLRKHFLA----TGIIRFYLS--NPEDFIPFHAVSQVDHIMRI 2052

Query: 394  LAWLFLAVTYNRT 432
            +    L +T  +T
Sbjct: 2053 ILGFLLFLTILKT 2065



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>Y2115_VIBPA (P46231) Hypothetical protein VP2115 (ORF3)|
          Length = 441

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = -2

Query: 194 VTFLS*LTPPVLFIFNLHPPSLPCVMCVCVPYVTTQFLFSPNGYVGLFLNH 42
           + F+  L PP+L +F         + CV    + T ++  P G+ G+FLN+
Sbjct: 123 IAFIPILIPPLLGVFAKLKLDRRLIACVLTFGLITPYMVLPVGFGGIFLNN 173



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>HXK2_HUMAN (P52789) Hexokinase-2 (EC 2.7.1.1) (Hexokinase type II) (HK II)|
           (Muscle form hexokinase)
          Length = 917

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -1

Query: 387 EEVQTLKTGMERRKVHWTDTCGKELFEIREFETSDEGLSDDEGENDGFKKCECVI 223
           E V+ +   M + ++ +      EL     FET D  +SD EGE DG +K   V+
Sbjct: 304 ELVRLILVKMAKEELLFGGKLSPELLNTGRFETKD--ISDIEGEKDGIRKAREVL 356



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>VPS16_YEAST (Q03308) Vacuolar protein sorting-associated protein VPS16|
          Length = 798

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 274 QTFVACFKFSDLKKFFPTRVSPVNFPPFHT 363
           +T V   KF +L +F  +R SP+ + PF+T
Sbjct: 692 KTLVEAKKFDELLQFAQSRKSPIGYMPFYT 721


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,418,842
Number of Sequences: 219361
Number of extensions: 1316422
Number of successful extensions: 3826
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3821
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4027872870
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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