ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart36b02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AIR12_ARATH (Q94BT2) Auxin-induced in root cultures protein 12 p... 50 5e-06

>AIR12_ARATH (Q94BT2) Auxin-induced in root cultures protein 12 precursor|
          Length = 252

 Score = 49.7 bits (117), Expect = 5e-06
 Identities = 20/47 (42%), Positives = 31/47 (65%)
 Frame = -1

Query: 511 SAGKIRLYGKLQLHSGMKAVNHIWQVGTSVTAGAPGKHAFAPGNLAS 371
           S G+I ++  +++ +G  +VN +WQ+G +VT G PG H F P NL S
Sbjct: 139 SGGRIAIFTTVKVPAGADSVNQVWQIGGNVTNGRPGVHPFGPDNLGS 185


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,213,323
Number of Sequences: 219361
Number of extensions: 530637
Number of successful extensions: 1680
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1680
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3869946934
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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