ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart36a07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY110229.1| Zea mays CL24135_2 mRNA sequence 80 5e-12
2ref|XM_549955.1| Oryza sativa (japonica cultivar-group), mRNA 68 2e-08
3ref|XM_549956.1| Oryza sativa (japonica cultivar-group), mRNA 68 2e-08
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 68 2e-08
5dbj|AP002487.1| Oryza sativa (japonica cultivar-group) genomic D... 68 2e-08
6dbj|AK100063.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 2e-08
7dbj|AK071475.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 2e-08
8gb|AC169813.2| Rhesus Macaque BAC CH250-16M3 (Children's Hospit... 42 1.1
9gb|AC117585.8| Mus musculus chromosome 5, clone RP23-155F13, com... 42 1.1
10gb|AC159224.6| Mus musculus chromosome 8, clone RP24-180O7, comp... 42 1.1
11emb|AL138694.18| Human DNA sequence from clone RP11-330C15 on ch... 42 1.1
12gb|AC093831.3| Homo sapiens BAC clone RP11-401I19 from 4, comple... 42 1.1
13gb|AF241308.1|AF241307S2 Ovis aries T cell receptor constant reg... 42 1.1
14gb|AC154767.2| Mus musculus BAC clone RP23-105P19 from chromosom... 42 1.1
15gb|AC010582.6|AC010582 Homo sapiens chromosome 14 clone CTD-2547... 42 1.1
16gb|AC103387.11| Mus musculus chromosome 3, clone RP24-383D8, com... 42 1.1
17emb|AL136040.5|CNS01DVV Human chromosome 14 DNA sequence BAC C-2... 42 1.1
18gb|AC164412.9| Mus musculus chromosome 3, clone RP24-360M7, comp... 42 1.1
19gb|AC104098.5| Mus musculus BAC clone RP24-372H3 from 5, complet... 42 1.1
20gb|AC153630.1| Mus musculus 6 BAC RP23-289O16 (Roswell Park Canc... 40 4.3
21gb|AC170187.2| Mus musculus BAC clone RP23-320B10 from chromosom... 40 4.3
22gb|AC098294.6| Rattus norvegicus 8 BAC CH230-1L23 (Children's Ho... 40 4.3
23gb|AC131792.4| Mus musculus BAC clone RP24-468O15 from chromosom... 40 4.3
24gb|AC130205.3| Mus musculus BAC clone RP24-430C1 from chromosome... 40 4.3
25gb|AC083805.17| Homo sapiens 12 BAC RP11-620J15 (Roswell Park Ca... 40 4.3
26emb|AJ245616.1|LLA245616 Lactococcus lactis phage BK5-T complete... 40 4.3
27gb|AC095039.3| Homo sapiens BAC clone RP11-12G8 from 7, complete... 40 4.3
28gb|AC111137.10| Mus musculus chromosome 5, clone RP23-357C4, com... 40 4.3
29emb|AL592223.5| Human DNA sequence from clone RP11-359P12 on chr... 40 4.3
30emb|AL591378.2| Human DNA sequence from clone RP11-64P15 on chro... 40 4.3
31emb|AL590732.7| Human DNA sequence from clone RP11-14I4 on chrom... 40 4.3
32gb|AC022296.34| Homo sapiens 3 BAC RP11-91K8 (Roswell Park Cance... 40 4.3
33gb|AC116645.4| Homo sapiens BAC clone RP11-685C12 from 4, comple... 40 4.3
34gb|AC090660.3| Homo sapiens chromosome 18, clone RP11-869O1, com... 40 4.3
35emb|AL683823.11| Mouse DNA sequence from clone RP23-128G10 on ch... 40 4.3
36gb|AF176025.1|AF176025 Lactococcus phage BK5-T, complete genome 40 4.3
37dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
38dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
39dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
40gb|AC151984.3| Mus musculus BAC clone RP23-388K15 from chromosom... 40 4.3
41gb|AC104069.3| Homo sapiens BAC clone RP11-279B11 from 2, comple... 40 4.3
42dbj|AP005872.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
43dbj|AP004093.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
44dbj|AP005867.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
45emb|AL929167.10| Mouse DNA sequence from clone RP23-5F14 on chro... 40 4.3
46dbj|AK101491.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.3
47dbj|AK064341.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.3
48gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.3
49emb|AL831796.5|CNS08CA9 Oryza sativa chromosome 12, . BAC OSJNBa... 40 4.3
50emb|AL844875.4|CNS08CAY Oryza sativa chromosome 12, . BAC OSJNBb... 40 4.3
51gb|AC132465.3| Mus musculus BAC clone RP23-58D1 from 10, complet... 40 4.3
52gb|AC148014.3| Mus musculus BAC clone RP23-118N15 from 19, compl... 40 4.3
53emb|AL928992.7| Mouse DNA sequence from clone RP23-208O9 on chro... 40 4.3
54emb|AL929497.7| Mouse DNA sequence from clone RP23-341F15 on chr... 40 4.3
55gb|AC153867.3| Mus musculus 6 BAC RP23-400K22 (Roswell Park Canc... 40 4.3 
>gb|AY110229.1| Zea mays CL24135_2 mRNA sequence
          Length = 807

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 52/56 (92%)
 Strand = Plus / Plus

                                                                   
Query: 267 ttgaagttctccacctcctgcactaactcatccttggtcctgctgcaggatgtgat 322
           ||||||||||| ||||||||||| |||||||||||||| |||||||| ||||||||
Sbjct: 81  ttgaagttctctacctcctgcaccaactcatccttggttctgctgcatgatgtgat 136
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>ref|XM_549955.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1309

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                       
Query: 257 ctttctctgattgaagttctccacctcctgcactaactcatccttggtcctgctgcagga 316
           ||||||||| |||||| |||| |||||||| || |||||||||||||| ||||| || ||
Sbjct: 939 ctttctctggttgaagctctctacctcctggaccaactcatccttggttctgctacatga 880

                 
Query: 317 tgtgat 322
           ||||||
Sbjct: 879 tgtgat 874



 Score = 46.1 bits (23), Expect = 0.069
 Identities = 80/99 (80%)
 Strand = Plus / Minus

                                                                        
Query: 140  gaaagcaacggtggcgatgcaaacaccatcgacgtttgggtaagcttgcacatggtcgag 199
            |||||||||||| | ||||||   || ||| ||| | ||||| | ||| |||||||||| 
Sbjct: 1056 gaaagcaacggtcgtgatgcaggaactatccacgatggggtacgtttggacatggtcgat 997

                                                   
Query: 200  gtacttgaacaccacagcatcgctggtcagcgctccttc 238
            ||||||||||||| ||| ||| |||| | |||| |||||
Sbjct: 996  gtacttgaacaccgcagtatcactggcctgcgcaccttc 958
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>ref|XM_549956.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1053

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                       
Query: 257 ctttctctgattgaagttctccacctcctgcactaactcatccttggtcctgctgcagga 316
           ||||||||| |||||| |||| |||||||| || |||||||||||||| ||||| || ||
Sbjct: 733 ctttctctggttgaagctctctacctcctggaccaactcatccttggttctgctacatga 674

                 
Query: 317 tgtgat 322
           ||||||
Sbjct: 673 tgtgat 668



 Score = 46.1 bits (23), Expect = 0.069
 Identities = 80/99 (80%)
 Strand = Plus / Minus

                                                                       
Query: 140 gaaagcaacggtggcgatgcaaacaccatcgacgtttgggtaagcttgcacatggtcgag 199
           |||||||||||| | ||||||   || ||| ||| | ||||| | ||| |||||||||| 
Sbjct: 850 gaaagcaacggtcgtgatgcaggaactatccacgatggggtacgtttggacatggtcgat 791

                                                  
Query: 200 gtacttgaacaccacagcatcgctggtcagcgctccttc 238
           ||||||||||||| ||| ||| |||| | |||| |||||
Sbjct: 790 gtacttgaacaccgcagtatcactggcctgcgcaccttc 752
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                           
Query: 257     ctttctctgattgaagttctccacctcctgcactaactcatccttggtcctgctgcagga 316
               ||||||||| |||||| |||| |||||||| || |||||||||||||| ||||| || ||
Sbjct: 1185329 ctttctctggttgaagctctctacctcctggaccaactcatccttggttctgctacatga 1185270

                     
Query: 317     tgtgat 322
               ||||||
Sbjct: 1185269 tgtgat 1185264



 Score = 46.1 bits (23), Expect = 0.069
 Identities = 80/99 (80%)
 Strand = Plus / Minus

                                                                           
Query: 140     gaaagcaacggtggcgatgcaaacaccatcgacgtttgggtaagcttgcacatggtcgag 199
               |||||||||||| | ||||||   || ||| ||| | ||||| | ||| |||||||||| 
Sbjct: 1185446 gaaagcaacggtcgtgatgcaggaactatccacgatggggtacgtttggacatggtcgat 1185387

                                                      
Query: 200     gtacttgaacaccacagcatcgctggtcagcgctccttc 238
               ||||||||||||| ||| ||| |||| | |||| |||||
Sbjct: 1185386 gtacttgaacaccgcagtatcactggcctgcgcaccttc 1185348
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>dbj|AP002487.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0684C01
          Length = 78600

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                         
Query: 257   ctttctctgattgaagttctccacctcctgcactaactcatccttggtcctgctgcagga 316
             ||||||||| |||||| |||| |||||||| || |||||||||||||| ||||| || ||
Sbjct: 39632 ctttctctggttgaagctctctacctcctggaccaactcatccttggttctgctacatga 39573

                   
Query: 317   tgtgat 322
             ||||||
Sbjct: 39572 tgtgat 39567



 Score = 46.1 bits (23), Expect = 0.069
 Identities = 80/99 (80%)
 Strand = Plus / Minus

                                                                         
Query: 140   gaaagcaacggtggcgatgcaaacaccatcgacgtttgggtaagcttgcacatggtcgag 199
             |||||||||||| | ||||||   || ||| ||| | ||||| | ||| |||||||||| 
Sbjct: 39749 gaaagcaacggtcgtgatgcaggaactatccacgatggggtacgtttggacatggtcgat 39690

                                                    
Query: 200   gtacttgaacaccacagcatcgctggtcagcgctccttc 238
             ||||||||||||| ||| ||| |||| | |||| |||||
Sbjct: 39689 gtacttgaacaccgcagtatcactggcctgcgcaccttc 39651
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>dbj|AK100063.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013160I04, full
           insert sequence
          Length = 1054

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                       
Query: 257 ctttctctgattgaagttctccacctcctgcactaactcatccttggtcctgctgcagga 316
           ||||||||| |||||| |||| |||||||| || |||||||||||||| ||||| || ||
Sbjct: 734 ctttctctggttgaagctctctacctcctggaccaactcatccttggttctgctacatga 675

                 
Query: 317 tgtgat 322
           ||||||
Sbjct: 674 tgtgat 669



 Score = 46.1 bits (23), Expect = 0.069
 Identities = 80/99 (80%)
 Strand = Plus / Minus

                                                                       
Query: 140 gaaagcaacggtggcgatgcaaacaccatcgacgtttgggtaagcttgcacatggtcgag 199
           |||||||||||| | ||||||   || ||| ||| | ||||| | ||| |||||||||| 
Sbjct: 851 gaaagcaacggtcgtgatgcaggaactatccacgatggggtacgtttggacatggtcgat 792

                                                  
Query: 200 gtacttgaacaccacagcatcgctggtcagcgctccttc 238
           ||||||||||||| ||| ||| |||| | |||| |||||
Sbjct: 791 gtacttgaacaccgcagtatcactggcctgcgcaccttc 753
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>dbj|AK071475.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023091F21, full
           insert sequence
          Length = 1310

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                       
Query: 257 ctttctctgattgaagttctccacctcctgcactaactcatccttggtcctgctgcagga 316
           ||||||||| |||||| |||| |||||||| || |||||||||||||| ||||| || ||
Sbjct: 940 ctttctctggttgaagctctctacctcctggaccaactcatccttggttctgctacatga 881

                 
Query: 317 tgtgat 322
           ||||||
Sbjct: 880 tgtgat 875



 Score = 46.1 bits (23), Expect = 0.069
 Identities = 80/99 (80%)
 Strand = Plus / Minus

                                                                        
Query: 140  gaaagcaacggtggcgatgcaaacaccatcgacgtttgggtaagcttgcacatggtcgag 199
            |||||||||||| | ||||||   || ||| ||| | ||||| | ||| |||||||||| 
Sbjct: 1057 gaaagcaacggtcgtgatgcaggaactatccacgatggggtacgtttggacatggtcgat 998

                                                   
Query: 200  gtacttgaacaccacagcatcgctggtcagcgctccttc 238
            ||||||||||||| ||| ||| |||| | |||| |||||
Sbjct: 997  gtacttgaacaccgcagtatcactggcctgcgcaccttc 959
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>gb|AC169813.2| Rhesus Macaque  BAC CH250-16M3 (Children's Hospital Oakland Research
              Institute Rhesus macaque Adult Male BAC Library) complete
              sequence
          Length = 168861

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 111    atacatatacatatatttcatgtat 135
              ||||||||||||||||| |||||||
Sbjct: 148819 atacatatacatatattacatgtat 148843
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>gb|AC117585.8| Mus musculus chromosome 5, clone RP23-155F13, complete sequence
          Length = 215745

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 112    tacatatacatatatttcatgtatg 136
              ||||||||||||||||| |||||||
Sbjct: 193301 tacatatacatatatttaatgtatg 193325
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>gb|AC159224.6| Mus musculus chromosome 8, clone RP24-180O7, complete sequence
          Length = 171002

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 111   atacatatacatatatttcat 131
             |||||||||||||||||||||
Sbjct: 51020 atacatatacatatatttcat 51040
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>emb|AL138694.18| Human DNA sequence from clone RP11-330C15 on chromosome 13q33.1-34
             Contains a pseudogene similar to part of host cell factor
             2 (HCF-2) and a CpG island, complete sequence
          Length = 157264

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 111   atacatatacatatatttcatgtat 135
             |||||||||||||||| ||||||||
Sbjct: 87569 atacatatacatatatatcatgtat 87545
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>gb|AC093831.3| Homo sapiens BAC clone RP11-401I19 from 4, complete sequence
          Length = 182116

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 115   atatacatatatttcatgtat 135
             |||||||||||||||||||||
Sbjct: 43463 atatacatatatttcatgtat 43443
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>gb|AF241308.1|AF241307S2 Ovis aries T cell receptor constant region Cgamma4, exons
          Length = 1988

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 111  atacatatacatatatttcatgtat 135
            |||||||||||||||| ||||||||
Sbjct: 1698 atacatatacatatatatcatgtat 1722
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>gb|AC154767.2| Mus musculus BAC clone RP23-105P19 from chromosome 13, complete
             sequence
          Length = 189362

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 112   tacatatacatatatttcatgtatg 136
             ||||||||||||||||| |||||||
Sbjct: 85574 tacatatacatatattttatgtatg 85550
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>gb|AC010582.6|AC010582 Homo sapiens chromosome 14 clone CTD-2547F10, complete sequence
          Length = 191549

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 95     aagagagggaggatggataca 115
              |||||||||||||||||||||
Sbjct: 153156 aagagagggaggatggataca 153136
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>gb|AC103387.11| Mus musculus chromosome 3, clone RP24-383D8, complete sequence
          Length = 157053

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 111    atacatatacatatatttcat 131
              |||||||||||||||||||||
Sbjct: 117123 atacatatacatatatttcat 117143
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>emb|AL136040.5|CNS01DVV Human chromosome 14 DNA sequence BAC C-2506P8 of library CalTech-D from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 199420

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 95    aagagagggaggatggataca 115
             |||||||||||||||||||||
Sbjct: 46882 aagagagggaggatggataca 46902
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>gb|AC164412.9| Mus musculus chromosome 3, clone RP24-360M7, complete sequence
          Length = 172583

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 111   atacatatacatatatttcat 131
             |||||||||||||||||||||
Sbjct: 26148 atacatatacatatatttcat 26168
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>gb|AC104098.5| Mus musculus BAC clone RP24-372H3 from 5, complete sequence
          Length = 180886

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 112   tacatatacatatatttcatgtatg 136
             ||||||||||||||||| |||||||
Sbjct: 11069 tacatatacatatatttaatgtatg 11093
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>gb|AC153630.1| Mus musculus 6 BAC RP23-289O16 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 217496

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 48    gctgtcctggggtacattgt 67
             ||||||||||||||||||||
Sbjct: 59522 gctgtcctggggtacattgt 59503
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>gb|AC170187.2| Mus musculus BAC clone RP23-320B10 from chromosome 19, complete
             sequence
          Length = 192550

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    gaacaagagagggaggatgg 110
             ||||||||||||||||||||
Sbjct: 30336 gaacaagagagggaggatgg 30355
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>gb|AC098294.6| Rattus norvegicus 8 BAC CH230-1L23 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 150308

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 300    ttggtcctgctgcaggatgt 319
              ||||||||||||||||||||
Sbjct: 101459 ttggtcctgctgcaggatgt 101478
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>gb|AC131792.4| Mus musculus BAC clone RP24-468O15 from chromosome 19, complete
             sequence
          Length = 162238

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 91    gaacaagagagggaggatgg 110
             ||||||||||||||||||||
Sbjct: 52924 gaacaagagagggaggatgg 52905
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>gb|AC130205.3| Mus musculus BAC clone RP24-430C1 from chromosome 1, complete sequence
          Length = 165927

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 116    tatacatatatttcatgtat 135
              ||||||||||||||||||||
Sbjct: 137267 tatacatatatttcatgtat 137248
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>gb|AC083805.17| Homo sapiens 12 BAC RP11-620J15 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 104816

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 103  gaggatggatacatatacatatat 126
            ||||||||||| ||||||||||||
Sbjct: 7246 gaggatggatatatatacatatat 7223
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>emb|AJ245616.1|LLA245616 Lactococcus lactis phage BK5-T complete genome
          Length = 40003

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 274   tctccacctcctgcactaactcat 297
             ||||||||||||||||||| ||||
Sbjct: 24975 tctccacctcctgcactaaatcat 24952
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>gb|AC095039.3| Homo sapiens BAC clone RP11-12G8 from 7, complete sequence
          Length = 70416

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 111   atacatatacatatatttcatgta 134
             ||||||||||||||||| ||||||
Sbjct: 27647 atacatatacatatattacatgta 27670
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>gb|AC111137.10| Mus musculus chromosome 5, clone RP23-357C4, complete sequence
          Length = 197271

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 116    tatacatatatttcatgtat 135
              ||||||||||||||||||||
Sbjct: 104194 tatacatatatttcatgtat 104175
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>emb|AL592223.5| Human DNA sequence from clone RP11-359P12 on chromosome 1, complete
             sequence
          Length = 76681

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 107   atggatacatatacatatat 126
             ||||||||||||||||||||
Sbjct: 69816 atggatacatatacatatat 69797
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>emb|AL591378.2| Human DNA sequence from clone RP11-64P15 on chromosome X Contains the
             5' end of a novel gene and a CpG island, complete sequence
          Length = 166016

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 106   gatggatacatatacatata 125
             ||||||||||||||||||||
Sbjct: 91346 gatggatacatatacatata 91327
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>emb|AL590732.7| Human DNA sequence from clone RP11-14I4 on chromosome 6 Contains the 5'
             end of a novel gene and a nucleophosmin (NPM1) pseudogene,
             complete sequence
          Length = 71092

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 111   atacatatacatatatttca 130
             ||||||||||||||||||||
Sbjct: 63159 atacatatacatatatttca 63178
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>gb|AC022296.34| Homo sapiens 3 BAC RP11-91K8 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 153650

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 111    atacatatacatatatttca 130
              ||||||||||||||||||||
Sbjct: 107622 atacatatacatatatttca 107641
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>gb|AC116645.4| Homo sapiens BAC clone RP11-685C12 from 4, complete sequence
          Length = 155761

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 107   atggatacatatacatatat 126
             ||||||||||||||||||||
Sbjct: 55668 atggatacatatacatatat 55687
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>gb|AC090660.3| Homo sapiens chromosome 18, clone RP11-869O1, complete sequence
          Length = 195156

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 115    atatacatatatttcatgta 134
              ||||||||||||||||||||
Sbjct: 149550 atatacatatatttcatgta 149531
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>emb|AL683823.11| Mouse DNA sequence from clone RP23-128G10 on chromosome 3, complete
              sequence
          Length = 180483

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 91     gaacaagagagggaggatgg 110
              ||||||||||||||||||||
Sbjct: 177127 gaacaagagagggaggatgg 177108
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>gb|AF176025.1|AF176025 Lactococcus phage BK5-T, complete genome
          Length = 40003

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 274   tctccacctcctgcactaactcat 297
             ||||||||||||||||||| ||||
Sbjct: 24975 tctccacctcctgcactaaatcat 24952
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 99       gagggaggatggatacatatacatatat 126
                |||||||| |||||||||||| ||||||
Sbjct: 11046761 gagggaggttggatacatatatatatat 11046734
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 90       ggaacaagagagggaggatggata 113
                |||||||||||||||||| |||||
Sbjct: 12354770 ggaacaagagagggaggaaggata 12354793
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 99      gagggaggatggatacatatacatatat 126
               |||||||| |||||||||||| ||||||
Sbjct: 3439403 gagggaggttggatacatatatatatat 3439430



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 99      gagggaggatggatacatatacatatat 126
               |||||||| |||||||||||| ||||||
Sbjct: 3434022 gagggaggttggatacatatatatatat 3434049
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>gb|AC151984.3| Mus musculus BAC clone RP23-388K15 from chromosome 10, complete
             sequence
          Length = 201867

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    gaacaagagagggaggatgg 110
             ||||||||||||||||||||
Sbjct: 70784 gaacaagagagggaggatgg 70803
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>gb|AC104069.3| Homo sapiens BAC clone RP11-279B11 from 2, complete sequence
          Length = 155106

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 111   atacatatacatatatttca 130
             ||||||||||||||||||||
Sbjct: 21597 atacatatacatatatttca 21578
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>dbj|AP005872.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:B1168F12
          Length = 141524

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 90     ggaacaagagagggaggatggata 113
              |||||||||||||||||| |||||
Sbjct: 138324 ggaacaagagagggaggaaggata 138347
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>dbj|AP004093.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1661_C12
          Length = 122214

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 99    gagggaggatggatacatatacatatat 126
             |||||||| |||||||||||| ||||||
Sbjct: 52226 gagggaggttggatacatatatatatat 52253



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 99    gagggaggatggatacatatacatatat 126
             |||||||| |||||||||||| ||||||
Sbjct: 46845 gagggaggttggatacatatatatatat 46872
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>dbj|AP005867.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0599F09
          Length = 157415

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 90    ggaacaagagagggaggatggata 113
             |||||||||||||||||| |||||
Sbjct: 20354 ggaacaagagagggaggaaggata 20377
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>emb|AL929167.10| Mouse DNA sequence from clone RP23-5F14 on chromosome 2, complete
             sequence
          Length = 148751

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 111   atacatatacatatatttca 130
             ||||||||||||||||||||
Sbjct: 84443 atacatatacatatatttca 84462
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>dbj|AK101491.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033042L23, full
           insert sequence
          Length = 1607

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 90  ggaacaagagagggaggatggata 113
           |||||||||||||||||| |||||
Sbjct: 394 ggaacaagagagggaggaaggata 417
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>dbj|AK064341.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-107-H04, full
           insert sequence
          Length = 1632

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 90  ggaacaagagagggaggatggata 113
           |||||||||||||||||| |||||
Sbjct: 419 ggaacaagagagggaggaaggata 442
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 99       gagggaggatggatacatatacatatat 126
                |||||||| |||||||||||| ||||||
Sbjct: 11046459 gagggaggttggatacatatatatatat 11046432
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>emb|AL831796.5|CNS08CA9 Oryza sativa chromosome 12, . BAC OSJNBa0012G19 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 157771

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 99     gagggaggatggatacatatacatatat 126
              |||||||| |||||||||||| ||||||
Sbjct: 139415 gagggaggttggatacatatatatatat 139442
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>emb|AL844875.4|CNS08CAY Oryza sativa chromosome 12, . BAC OSJNBb0032I14 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 134082

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 99    gagggaggatggatacatatacatatat 126
             |||||||| |||||||||||| ||||||
Sbjct: 58814 gagggaggttggatacatatatatatat 58841
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>gb|AC132465.3| Mus musculus BAC clone RP23-58D1 from 10, complete sequence
          Length = 218313

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 91     gaacaagagagggaggatgg 110
              ||||||||||||||||||||
Sbjct: 185439 gaacaagagagggaggatgg 185458
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>gb|AC148014.3| Mus musculus BAC clone RP23-118N15 from 19, complete sequence
          Length = 222061

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 91     gaacaagagagggaggatgg 110
              ||||||||||||||||||||
Sbjct: 202501 gaacaagagagggaggatgg 202520
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>emb|AL928992.7| Mouse DNA sequence from clone RP23-208O9 on chromosome 2, complete
            sequence
          Length = 136064

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 107  atggatacatatacatatat 126
            ||||||||||||||||||||
Sbjct: 6382 atggatacatatacatatat 6363
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>emb|AL929497.7| Mouse DNA sequence from clone RP23-341F15 on chromosome 4, complete
             sequence
          Length = 38346

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 112   tacatatacatatatttcatgtat 135
             ||||||| ||||||||||||||||
Sbjct: 29750 tacatattcatatatttcatgtat 29727
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>gb|AC153867.3| Mus musculus 6 BAC RP23-400K22 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse6 BAC Library) complete sequence
          Length = 196838

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 48     gctgtcctggggtacattgt 67
              ||||||||||||||||||||
Sbjct: 113214 gctgtcctggggtacattgt 113195


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,585,503
Number of Sequences: 3902068
Number of extensions: 3585503
Number of successful extensions: 133917
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 133510
Number of HSP's gapped (non-prelim): 407
length of query: 324
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 302
effective length of database: 17,147,199,772
effective search space: 5178454331144
effective search space used: 5178454331144
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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