ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart36a05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GL21_ARATH (P94014) Germin-like protein subfamily 2 member 1 pre... 33 0.48
2OXO2_HORVU (P45851) Oxalate oxidase 2 precursor (EC 1.2.3.4) (Ge... 31 1.8
3GLT1_ARATH (P92995) Germin-like protein subfamily T member 1 pre... 30 5.3
4DPOLQ_HUMAN (O75417) DNA polymerase theta (EC 2.7.7.7) (DNA poly... 30 5.3
5CAC1B_HUMAN (Q00975) Voltage-dependent N-type calcium channel al... 29 7.0
6GER2_WHEAT (P15290) Oxalate oxidase GF-2.8 precursor (EC 1.2.3.4... 29 7.0
7HTRA1_HUMAN (Q92743) Serine protease HTRA1 precursor (EC 3.4.21.... 29 9.1
8TRPC_DEIRA (Q9RUG0) Indole-3-glycerol phosphate synthase (EC 4.1... 29 9.1
9GLT2_ARATH (Q9LMC9) Germin-like protein subfamily T member 2 pre... 29 9.1
10GL111_ARATH (Q9FMA8) Germin-like protein subfamily 1 member 11 p... 29 9.1
11GER3_WHEAT (P26759) Oxalate oxidase GF-3.8 precursor (EC 1.2.3.4... 29 9.1

>GL21_ARATH (P94014) Germin-like protein subfamily 2 member 1 precursor|
          Length = 207

 Score = 33.1 bits (74), Expect = 0.48
 Identities = 17/37 (45%), Positives = 23/37 (62%)
 Frame = +1

Query: 229 MPLPISRAILSLVTIIFFSAVCSSDPDLLVDYCVADM 339
           M  P    +L L T+ FF +  S+DPD+L D CVAD+
Sbjct: 1   MASPTLTLLLLLTTVSFFIS-SSADPDMLQDLCVADL 36



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>OXO2_HORVU (P45851) Oxalate oxidase 2 precursor (EC 1.2.3.4) (Germin)|
          Length = 224

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 250 AILSLVTIIFFSAVCSSDPDLLVDYCVADMRAAA 351
           A+     ++   AV +SDPD L D+CVAD+   A
Sbjct: 8   AVSLFAVLLLAPAVLASDPDPLQDFCVADLDGKA 41



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>GLT1_ARATH (P92995) Germin-like protein subfamily T member 1 precursor|
          Length = 220

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +1

Query: 229 MPLPISRAILSLVTIIFFSAVCSSDPDLLVDYCVADMRAAA 351
           +P  + R+ L L+  +F     SSD D L D+CV D++A+A
Sbjct: 6   IPSALLRSFL-LMFCLFVIPSLSSDSDPLQDFCVGDLKASA 45



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>DPOLQ_HUMAN (O75417) DNA polymerase theta (EC 2.7.7.7) (DNA polymerase eta)|
          Length = 1762

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -2

Query: 336 VGDAVVDEEVRVGAADGGEEDDRHERKDGSRDGKRHGWLW 217
           + D V+DE  + G  DGG++D+R E+   +   + H ++W
Sbjct: 765 LSDPVLDEHHQ-GDQDGGDQDERAEKSKLTGTRQNHSFIW 803



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>CAC1B_HUMAN (Q00975) Voltage-dependent N-type calcium channel alpha-1B subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.2)
            (Calcium channel, L type, alpha-1 polypeptide isoform 5)
            (Brain calcium channel III) (BIII)
          Length = 2339

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 22/84 (26%), Positives = 35/84 (41%)
 Frame = +1

Query: 238  PISRAILSLVTIIFFSAVCSSDPDLLVDYCVADMRAAAGAHRHSYRCHPPPFYFVPLRQA 417
            P+ R+I +L      + +CS+ PD           + A +H H +RCH          + 
Sbjct: 2017 PMKRSISTLAQRPRGTHLCSTTPD-------RPPPSQASSHHHHHRCHR------RRDRK 2063

Query: 418  QRGRREGNSLALRCSSEPRAAANP 489
            QR   +G SL+      P +A  P
Sbjct: 2064 QRSLEKGPSLSADMDGAPSSAVGP 2087



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>GER2_WHEAT (P15290) Oxalate oxidase GF-2.8 precursor (EC 1.2.3.4) (Germin|
           GF-2.8)
          Length = 224

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 271 IIFFSAVCSSDPDLLVDYCVADMRAAAGAHRHSYRCHP 384
           ++   AV ++DPD L D+CVAD+   A    + + C P
Sbjct: 15  LLLAPAVLATDPDPLQDFCVADLDGKA-VSVNGHTCKP 51



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>HTRA1_HUMAN (Q92743) Serine protease HTRA1 precursor (EC 3.4.21.-) (L56)|
          Length = 480

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 21/67 (31%), Positives = 29/67 (43%)
 Frame = +1

Query: 247 RAILSLVTIIFFSAVCSSDPDLLVDYCVADMRAAAGAHRHSYRCHPPPFYFVPLRQAQRG 426
           RA   L        VC SD +   + C   +RAA+   R S R H PP   +      +G
Sbjct: 104 RAQAGLCVCASSEPVCGSDANTYANLC--QLRAAS---RRSERLHRPPVIVLQRGACGQG 158

Query: 427 RREGNSL 447
           + + NSL
Sbjct: 159 QEDPNSL 165



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>TRPC_DEIRA (Q9RUG0) Indole-3-glycerol phosphate synthase (EC 4.1.1.48) (IGPS)|
          Length = 267

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +1

Query: 412 QAQRGRREGNSLALRCSSEPRAAANPIDGLRCGVAA 519
           QA R   EG + A+ C +EPR      + LR  VAA
Sbjct: 81  QAARAYAEGGAAAISCLTEPRHFGGSPEALRAVVAA 116



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>GLT2_ARATH (Q9LMC9) Germin-like protein subfamily T member 2 precursor|
          Length = 220

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 262 LVTIIFFSAVCSSDPDLLVDYCVADMRAA 348
           LV  +F     SSD D L D+CV D++A+
Sbjct: 16  LVICVFVIPSLSSDSDPLQDFCVGDLKAS 44



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>GL111_ARATH (Q9FMA8) Germin-like protein subfamily 1 member 11 precursor|
          Length = 223

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
 Frame = +1

Query: 250 AILSLVTIIFFSAVCSSDPDLLVDYCVADMRAAAGAHRHSYRCHPP------PFYFVPLR 411
           A+LSL+ +    A+ +SDP  L D+CV+   +A G   +   C  P       F+F  L+
Sbjct: 10  AVLSLLALTLPLAI-ASDPSQLQDFCVSANTSANGVFVNGKFCKDPKLVTADDFFFSGLQ 68

Query: 412 QAQ 420
            A+
Sbjct: 69  TAR 71



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>GER3_WHEAT (P26759) Oxalate oxidase GF-3.8 precursor (EC 1.2.3.4) (Germin|
           GF-3.8)
          Length = 224

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 271 IIFFSAVCSSDPDLLVDYCVADMRAAAGAHRHSYRCHP 384
           ++  SAV SS+P  L D+CVAD+   A    + + C P
Sbjct: 15  LLLASAVLSSNPHPLQDFCVADLDGKA-VSVNGHMCKP 51


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,879,471
Number of Sequences: 219361
Number of extensions: 1300320
Number of successful extensions: 3992
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3986
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4027872870
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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