ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart35h12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MYCN_HUMAN (P04198) N-myc proto-oncogene protein 28 8.1
2DHX33_HUMAN (Q9H6R0) Putative ATP-dependent RNA helicase DHX33 (... 28 8.1

>MYCN_HUMAN (P04198) N-myc proto-oncogene protein|
          Length = 464

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 14/25 (56%), Positives = 14/25 (56%)
 Frame = -1

Query: 426 ASAPRHGPRAAEGRG*PASAAVPGV 352
           ASAP  GP  A G G  A A  PGV
Sbjct: 210 ASAPAAGPAVASGAGIAAPAGAPGV 234



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>DHX33_HUMAN (Q9H6R0) Putative ATP-dependent RNA helicase DHX33 (EC 3.6.1.-)|
           (DEAH box protein 33)
          Length = 707

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
 Frame = +1

Query: 322 PPLRDSVTQEDAGDGGAG-----RSSPPLRRPRAVPWRAGV 429
           PP R  V    AG GG G     R  PPL +P A P+   V
Sbjct: 27  PPGRQVVMLLTAGSGGRGGGGGRRQQPPLAQPSASPYPEAV 67


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,573,312
Number of Sequences: 219361
Number of extensions: 693265
Number of successful extensions: 1651
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1651
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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