ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart35h10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1APX2_ORYSA (Q9FE01) L-ascorbate peroxidase 2, cytosolic (EC 1.11... 38 0.012
2APX1_ORYSA (P93404) L-ascorbate peroxidase 1, cytosolic (EC 1.11... 37 0.016
3APX1_ARATH (Q05431) L-ascorbate peroxidase, cytosolic (EC 1.11.1... 36 0.046
4APX1_PEA (P48534) L-ascorbate peroxidase, cytosolic (EC 1.11.1.1... 35 0.10
5THA11_MOUSE (Q9JJD0) THAP domain-containing protein 11 28 7.4
6THA11_HUMAN (Q96EK4) THAP domain-containing protein 11 28 7.4

>APX2_ORYSA (Q9FE01) L-ascorbate peroxidase 2, cytosolic (EC 1.11.1.11) (APXb)|
          Length = 251

 Score = 37.7 bits (86), Expect = 0.012
 Identities = 19/35 (54%), Positives = 20/35 (57%)
 Frame = -2

Query: 433 PAFRPLVDKXXXXXXXXXXXXXXAHLKLSELGFGE 329
           PAFRPLV+K              AHLKLSELGF E
Sbjct: 216 PAFRPLVEKYAADEDAFFADYAEAHLKLSELGFAE 250



to top

>APX1_ORYSA (P93404) L-ascorbate peroxidase 1, cytosolic (EC 1.11.1.11) (APXa)|
          Length = 249

 Score = 37.4 bits (85), Expect = 0.016
 Identities = 19/36 (52%), Positives = 21/36 (58%)
 Frame = -2

Query: 433 PAFRPLVDKXXXXXXXXXXXXXXAHLKLSELGFGEA 326
           PAFRPLV+K              AHLKLSELGF +A
Sbjct: 214 PAFRPLVEKYAADEKAFFEDYKEAHLKLSELGFADA 249



to top

>APX1_ARATH (Q05431) L-ascorbate peroxidase, cytosolic (EC 1.11.1.11) (AP)|
          Length = 249

 Score = 35.8 bits (81), Expect = 0.046
 Identities = 17/36 (47%), Positives = 20/36 (55%)
 Frame = -2

Query: 433 PAFRPLVDKXXXXXXXXXXXXXXAHLKLSELGFGEA 326
           P FRPLV+K              AH+KLSELGF +A
Sbjct: 214 PVFRPLVEKYAADEDAFFADYAEAHMKLSELGFADA 249



to top

>APX1_PEA (P48534) L-ascorbate peroxidase, cytosolic (EC 1.11.1.11) (AP)|
          Length = 249

 Score = 34.7 bits (78), Expect = 0.10
 Identities = 18/34 (52%), Positives = 19/34 (55%)
 Frame = -2

Query: 427 FRPLVDKXXXXXXXXXXXXXXAHLKLSELGFGEA 326
           FRPLV+K              AHLKLSELGF EA
Sbjct: 216 FRPLVEKYAADEDVFFADYAEAHLKLSELGFAEA 249



to top

>THA11_MOUSE (Q9JJD0) THAP domain-containing protein 11|
          Length = 305

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = -2

Query: 166 IWIRSVGRWGVALFCF*RLVSCDGPA-CSVN----R*VLCSSFPVVFPCRGRNEKK 14
           +W+++V R GV+  CF       G   CSV+    R       P +FP RG NE+K
Sbjct: 35  LWLKNVSRAGVS-GCFSTFQPTTGHRLCSVHFQGGRKTYTVRVPTIFPLRGVNERK 89



to top

>THA11_HUMAN (Q96EK4) THAP domain-containing protein 11|
          Length = 313

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = -2

Query: 166 IWIRSVGRWGVALFCF*RLVSCDGPA-CSVN----R*VLCSSFPVVFPCRGRNEKK 14
           +W+++V R GV+  CF       G   CSV+    R       P +FP RG NE+K
Sbjct: 35  LWLKNVSRAGVS-GCFSTFQPTTGHRLCSVHFQGGRKTYTVRVPTIFPLRGVNERK 89


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,197,257
Number of Sequences: 219361
Number of extensions: 787752
Number of successful extensions: 1999
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1997
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2511994855
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top