ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbart35h08 |
|---|---|
| Clone Library Name | barley_pub |
>MUC1_YEAST (P08640) Mucin-like protein 1 precursor| Length = 1367 Score = 34.7 bits (78), Expect = 0.11 Identities = 36/139 (25%), Positives = 48/139 (34%) Frame = +1 Query: 1 EIYSSPVP*DCRGGTDRSKLPMFLXXXXXXXXXXXXXXXXXXAADALASDVPAXXXXXXI 180 E S+PVP T+ S P ++ ++ VP Sbjct: 506 ESSSAPVPTPSSSTTESSSAPA--PTPSSSTTESSSAPVTSSTTESSSAPVPTPSSSTTE 563 Query: 181 *VQTSETSSTTGPQSEPLPSAMVW*PEL*STTRVRFPSAVNASSPRACPPLPLEWYSTVA 360 T TSSTT S P+P+ E S+ V PS+ S A P P ST Sbjct: 564 SSSTPVTSSTTESSSAPVPTPSSSTTES-SSAPVPTPSSSTTESSSAPAPTPSS--STTE 620 Query: 361 GPCAPVAAATTRMGCCSGP 417 APV ++TT P Sbjct: 621 SSSAPVTSSTTESSSAPVP 639 Score = 33.9 bits (76), Expect = 0.18 Identities = 31/139 (22%), Positives = 47/139 (33%) Frame = +1 Query: 1 EIYSSPVP*DCRGGTDRSKLPMFLXXXXXXXXXXXXXXXXXXAADALASDVPAXXXXXXI 180 E S+PVP T+ S P+ +A +S + Sbjct: 389 ESSSAPVPTPSSSTTESSSAPVTSSTTESSSAPVTSSTTESSSAPVTSSTTESSSAPV-- 446 Query: 181 *VQTSETSSTTGPQSEPLPSAMVW*PEL*STTRVRFPSAVNASSPRACPPLPLEWYSTVA 360 TSSTT S P+P+ STT ++++ + P+P ST Sbjct: 447 ------TSSTTESSSAPVPTPSS------STTESSSAPVTSSTTESSSAPVPTPSSSTTE 494 Query: 361 GPCAPVAAATTRMGCCSGP 417 APV ++TT P Sbjct: 495 SSSAPVTSSTTESSSAPVP 513 Score = 30.4 bits (67), Expect = 2.0 Identities = 31/145 (21%), Positives = 48/145 (33%) Frame = +1 Query: 1 EIYSSPVP*DCRGGTDRSKLPMFLXXXXXXXXXXXXXXXXXXAADALASDVPAXXXXXXI 180 E S+PVP T+ S P+ + + + P+ Sbjct: 479 ESSSAPVPTPSSSTTESSSAPVTSSTTESSSAPVPTPSSSTTESSSAPAPTPSSSTTESS 538 Query: 181 *VQTSETSSTTGPQSEPLPSAMVW*PEL*STTRVRFPSAVNASSPRACPPLPLEWYSTVA 360 TSSTT S P+P+ STT ++++ + P+P ST Sbjct: 539 --SAPVTSSTTESSSAPVPTPSS------STTESSSTPVTSSTTESSSAPVPTPSSSTTE 590 Query: 361 GPCAPVAAATTRMGCCSGPHATHPS 435 APV ++ S A PS Sbjct: 591 SSSAPVPTPSSSTTESSSAPAPTPS 615 Score = 30.0 bits (66), Expect = 2.7 Identities = 25/73 (34%), Positives = 32/73 (43%) Frame = +1 Query: 199 TSSTTGPQSEPLPSAMVW*PEL*STTRVRFPSAVNASSPRACPPLPLEWYSTVAGPCAPV 378 TSSTT S P+P+ E S+ V PS+ S A P+P ST APV Sbjct: 696 TSSTTESSSAPVPTPSSSTTES-SSAPVPTPSSSTTESSSA--PVPTPSSSTTESSSAPV 752 Query: 379 AAATTRMGCCSGP 417 ++TT P Sbjct: 753 TSSTTESSSAPVP 765 Score = 29.6 bits (65), Expect = 3.5 Identities = 24/65 (36%), Positives = 31/65 (47%) Frame = +1 Query: 199 TSSTTGPQSEPLPSAMVW*PEL*STTRVRFPSAVNASSPRACPPLPLEWYSTVAGPCAPV 378 TSSTT S P+P+ E S+ V PS+ S A P+P ST APV Sbjct: 627 TSSTTESSSAPVPTPSSSTTES-SSAPVPTPSSSTTESSSA--PVPTPSSSTTESSSAPV 683 Query: 379 AAATT 393 ++TT Sbjct: 684 TSSTT 688 Score = 28.9 bits (63), Expect = 5.9 Identities = 34/153 (22%), Positives = 53/153 (34%), Gaps = 14/153 (9%) Frame = +1 Query: 1 EIYSSPVP*DCRGGTDRSKLPMFLXXXXXXXXXXXXXXXXXXAADALASDVPAXXXXXXI 180 E S+PVP T+ S P+ + + P+ Sbjct: 716 ESSSAPVPTPSSSTTESSSAPVPTPSSSTTESSSAPVTSSTTESSSAPVPTPSSSTTESS 775 Query: 181 *VQT-SETSSTTGPQSEPLPSAMVW*PEL*STTRVRFPSA---VNASSPRACP------- 327 + +SSTT S P+P+ E S V PS+ + +S+P + P Sbjct: 776 SAPVPTPSSSTTESSSAPVPTPSSSTTES-SVAPVPTPSSSSNITSSAPSSTPFSSSTES 834 Query: 328 ---PLPLEWYSTVAGPCAPVAAATTRMGCCSGP 417 P+P ST APV+++TT P Sbjct: 835 SSVPVPTPSSSTTESSSAPVSSSTTESSVAPVP 867 Score = 28.9 bits (63), Expect = 5.9 Identities = 19/65 (29%), Positives = 30/65 (46%) Frame = +1 Query: 199 TSSTTGPQSEPLPSAMVW*PEL*STTRVRFPSAVNASSPRACPPLPLEWYSTVAGPCAPV 378 +SSTT S P+P+ STT ++++ + P+P ST APV Sbjct: 318 SSSTTESSSAPVPTPSS------STTESSSAPVTSSTTESSSAPVPTPSSSTTESSSAPV 371 Query: 379 AAATT 393 ++TT Sbjct: 372 TSSTT 376
>PO121_HUMAN (Q9Y2N3) Nuclear envelope pore membrane protein POM 121 (Pore| membrane protein of 121 kDa) (P145) Length = 1229 Score = 30.0 bits (66), Expect = 2.7 Identities = 22/77 (28%), Positives = 28/77 (36%), Gaps = 1/77 (1%) Frame = +1 Query: 205 STTGPQSEPLPSAMVW*PEL*STTRVRFPSAVNASSPRACPPLPLEWYSTVAGPC-APVA 381 + T P S LP+ STT F ++ P A PLP ++ P AP Sbjct: 728 TATAPSSSSLPTTT-------STTAPTFQPVFSSMGPPASVPLPAPFFKQTTTPATAPTT 780 Query: 382 AATTRMGCCSGPHATHP 432 A G S A P Sbjct: 781 TAPLFTGLASATSAVAP 797
>MUC5A_HUMAN (P98088) Mucin-5AC (Mucin 5 subtype AC, tracheobronchial)| (Tracheobronchial mucin) (TBM) (Major airway glycoprotein) (Fragment) Length = 1233 Score = 29.3 bits (64), Expect = 4.5 Identities = 24/80 (30%), Positives = 32/80 (40%) Frame = +1 Query: 199 TSSTTGPQSEPLPSAMVW*PEL*STTRVRFPSAVNASSPRACPPLPLEWYSTVAGPCAPV 378 T+STT +PS P TT + +S P P+ ST + P Sbjct: 17 TTSTTSAPITSMPSGPGTTPSPVPTTSTTSAPTTSTTSGPGTTPSPVPTTSTTSAPTTST 76 Query: 379 AAATTRMGCCSGPHATHPSP 438 +A+T SGP T PSP Sbjct: 77 TSAST-ASTTSGP-GTTPSP 94
>YPJA_ECOLI (P52143) Hypothetical outer membrane protein ypjA| Length = 1569 Score = 29.3 bits (64), Expect = 4.5 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = -1 Query: 389 VAAATGAQGPATVEYHSSGKGGHARGELAFTAEGN 285 VA + G A YHS+G GGH + FT +GN Sbjct: 1404 VAGKMSSGGAANGSYHSNGLGGHIETGMRFT-DGN 1437
>US32_HCMVA (P09708) Hypothetical protein HHRF7| Length = 183 Score = 28.9 bits (63), Expect = 5.9 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = -2 Query: 340 PVARAGTRAASWRSRRRGTARGWC 269 P RA RAA+WR + R R WC Sbjct: 45 PTTRAERRAANWRRQMRRLHRLWC 68
>PERT_BORBR (Q03035) Pertactin precursor (P.94) [Contains: Outer membrane| protein P.68] Length = 916 Score = 28.9 bits (63), Expect = 5.9 Identities = 13/40 (32%), Positives = 19/40 (47%) Frame = -1 Query: 347 YHSSGKGGHARGELAFTAEGNRTRVVLYSSGYHTMADGSG 228 +H G G+ RG+ FT +G ++ GY T SG Sbjct: 696 WHLGGLAGYTRGDRGFTGDGGGHTDSVHVGGYATYIANSG 735
>BORG5_HUMAN (Q00587) Cdc42 effector protein 1 (Binder of Rho GTPases 5) (Serum| protein MSE55) Length = 391 Score = 28.9 bits (63), Expect = 5.9 Identities = 17/47 (36%), Positives = 22/47 (46%) Frame = +1 Query: 301 NASSPRACPPLPLEWYSTVAGPCAPVAAATTRMGCCSGPHATHPSPA 441 N + P A PP +T A P AP A + +GP A P+PA Sbjct: 237 NPTGPAANPP------ATTANPPAPAANPSAPAATPTGPAANPPAPA 277
>PERT_BORPA (P24328) Pertactin precursor (P.95) [Contains: Outer membrane| protein P.70] Length = 922 Score = 28.9 bits (63), Expect = 5.9 Identities = 13/40 (32%), Positives = 19/40 (47%) Frame = -1 Query: 347 YHSSGKGGHARGELAFTAEGNRTRVVLYSSGYHTMADGSG 228 +H G G+ RG+ FT +G ++ GY T SG Sbjct: 702 WHLGGLAGYTRGDRGFTGDGGGHTDSVHVGGYATYIANSG 741
>CABP4_BOVIN (Q8HZJ4) Calcium-binding protein 4 (CaBP4)| Length = 279 Score = 28.9 bits (63), Expect = 5.9 Identities = 12/34 (35%), Positives = 22/34 (64%) Frame = -1 Query: 413 PEQQPMRVVAAATGAQGPATVEYHSSGKGGHARG 312 P++ P+ V+A+++GA+GP + SS + RG Sbjct: 18 PQKPPVEVLASSSGAEGPPLMRKRSSKREKGLRG 51
>PRGR_CANFA (Q9GLW0) Progesterone receptor (PR)| Length = 939 Score = 28.9 bits (63), Expect = 5.9 Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 3/53 (5%) Frame = +1 Query: 292 SAVNASSPRACP---PLPLEWYSTVAGPCAPVAAATTRMGCCSGPHATHPSPA 441 S V A +P A P PLP S+ G AP AAA CS A+ P PA Sbjct: 415 SCVFADAPPALPALPPLPPRAPSSRPGEGAPAAAAAAG---CSASSASSPGPA 464
>PERT_BORPE (P14283) Pertactin precursor (P.93) [Contains: Outer membrane| protein P.69] Length = 910 Score = 28.5 bits (62), Expect = 7.7 Identities = 13/40 (32%), Positives = 19/40 (47%) Frame = -1 Query: 347 YHSSGKGGHARGELAFTAEGNRTRVVLYSSGYHTMADGSG 228 +H G G+ RG+ FT +G ++ GY T SG Sbjct: 690 WHLGGLAGYTRGDRGFTGDGGGHTDSVHVGGYATYIADSG 729 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,111,687 Number of Sequences: 219361 Number of extensions: 671041 Number of successful extensions: 2430 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 2342 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2425 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2618960580 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
