ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart35h08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_473015.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1134 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Minus Query: 190 acgagcgagacgtcgtcgacgacggggccgcagagcg 226 ||||||||| |||||||||||||||| ||||| |||| Sbjct: 1085 acgagcgaggcgtcgtcgacgacgggcccgcacagcg 1049
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Minus Query: 190 acgagcgagacgtcgtcgacgacggggccgcagagcg 226 ||||||||| |||||||||||||||| ||||| |||| Sbjct: 24703662 acgagcgaggcgtcgtcgacgacgggcccgcacagcg 24703626 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 366 ctgcgcccccgtggccgccgccacc 390 |||||||||| |||||||||||||| Sbjct: 7514801 ctgcgcccccttggccgccgccacc 7514825 Score = 40.1 bits (20), Expect = 6.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 200 cgtcgtcgacgacggggccgcagagcgagccg 231 |||||||||||||||| || ||||||| |||| Sbjct: 24721396 cgtcgtcgacgacgggcccacagagcgtgccg 24721365
>dbj|AK110895.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-173-A05, full insert sequence Length = 1499 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Minus Query: 190 acgagcgagacgtcgtcgacgacggggccgcagagcg 226 ||||||||| |||||||||||||||| ||||| |||| Sbjct: 1216 acgagcgaggcgtcgtcgacgacgggcccgcacagcg 1180
>emb|AL606629.3|OSJN00061 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0091E11, complete sequence Length = 133856 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Minus Query: 190 acgagcgagacgtcgtcgacgacggggccgcagagcg 226 ||||||||| |||||||||||||||| ||||| |||| Sbjct: 93185 acgagcgaggcgtcgtcgacgacgggcccgcacagcg 93149 Score = 40.1 bits (20), Expect = 6.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 200 cgtcgtcgacgacggggccgcagagcgagccg 231 |||||||||||||||| || ||||||| |||| Sbjct: 110919 cgtcgtcgacgacgggcccacagagcgtgccg 110888
>ref|NM_192744.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1122 Score = 46.1 bits (23), Expect = 0.097 Identities = 38/43 (88%) Strand = Plus / Minus Query: 189 gacgagcgagacgtcgtcgacgacggggccgcagagcgagccg 231 |||||| ||| ||||||||| ||| || ||||||||||||||| Sbjct: 1080 gacgagggaggcgtcgtcgatgaccggcccgcagagcgagccg 1038
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 46.1 bits (23), Expect = 0.097 Identities = 38/43 (88%) Strand = Plus / Minus Query: 189 gacgagcgagacgtcgtcgacgacggggccgcagagcgagccg 231 |||||| ||| ||||||||| ||| || ||||||||||||||| Sbjct: 24179599 gacgagggaggcgtcgtcgatgaccggcccgcagagcgagccg 24179557
>dbj|AP002844.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0410E03 Length = 164839 Score = 46.1 bits (23), Expect = 0.097 Identities = 38/43 (88%) Strand = Plus / Minus Query: 189 gacgagcgagacgtcgtcgacgacggggccgcagagcgagccg 231 |||||| ||| ||||||||| ||| || ||||||||||||||| Sbjct: 155421 gacgagggaggcgtcgtcgatgaccggcccgcagagcgagccg 155379
>dbj|AP003314.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0046B10 Length = 142596 Score = 46.1 bits (23), Expect = 0.097 Identities = 38/43 (88%) Strand = Plus / Minus Query: 189 gacgagcgagacgtcgtcgacgacggggccgcagagcgagccg 231 |||||| ||| ||||||||| ||| || ||||||||||||||| Sbjct: 4163 gacgagggaggcgtcgtcgatgaccggcccgcagagcgagccg 4121
>dbj|AK105921.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-A04, full insert sequence Length = 1474 Score = 46.1 bits (23), Expect = 0.097 Identities = 38/43 (88%) Strand = Plus / Minus Query: 189 gacgagcgagacgtcgtcgacgacggggccgcagagcgagccg 231 |||||| ||| ||||||||| ||| || ||||||||||||||| Sbjct: 1068 gacgagggaggcgtcgtcgatgaccggcccgcagagcgagccg 1026
>dbj|AK072500.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023127H12, full insert sequence Length = 1690 Score = 46.1 bits (23), Expect = 0.097 Identities = 38/43 (88%) Strand = Plus / Minus Query: 189 gacgagcgagacgtcgtcgacgacggggccgcagagcgagccg 231 |||||| ||| ||||||||| ||| || ||||||||||||||| Sbjct: 1197 gacgagggaggcgtcgtcgatgaccggcccgcagagcgagccg 1155
>dbj|AK060682.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-E10, full insert sequence Length = 1597 Score = 46.1 bits (23), Expect = 0.097 Identities = 38/43 (88%) Strand = Plus / Minus Query: 189 gacgagcgagacgtcgtcgacgacggggccgcagagcgagccg 231 |||||| ||| ||||||||| ||| || ||||||||||||||| Sbjct: 1193 gacgagggaggcgtcgtcgatgaccggcccgcagagcgagccg 1151
>gb|AC135564.4| Oryza sativa chromosome 3 BAC OSJNBb0056O10 genomic sequence, complete sequence Length = 139771 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 192 gagcgagacgtcgtcgacgacg 213 |||||||||||||||||||||| Sbjct: 30404 gagcgagacgtcgtcgacgacg 30383
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 192 gagcgagacgtcgtcgacgacg 213 |||||||||||||||||||||| Sbjct: 21857412 gagcgagacgtcgtcgacgacg 21857433 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 373 cccgtggccgccgccaccac 392 |||||||||||||||||||| Sbjct: 35012951 cccgtggccgccgccaccac 35012932
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 192 gagcgagacgtcgtcgacgacg 213 |||||||||||||||||||||| Sbjct: 21850441 gagcgagacgtcgtcgacgacg 21850462 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 373 cccgtggccgccgccaccac 392 |||||||||||||||||||| Sbjct: 35103023 cccgtggccgccgccaccac 35103004
>emb|AL954317.8| Zebrafish DNA sequence from clone DKEY-251I8 in linkage group 1, complete sequence Length = 97165 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 74 gaagagaagaaaacgaaagaaa 95 |||||||||||||||||||||| Sbjct: 94739 gaagagaagaaaacgaaagaaa 94760
>gb|AC165155.2| Mus musculus BAC clone RP23-293N22 from chromosome 14, complete sequence Length = 226292 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 70 ctcagaagagaagaaaacgaa 90 ||||||||||||||||||||| Sbjct: 94995 ctcagaagagaagaaaacgaa 95015
>gb|AC165272.2| Mus musculus BAC clone RP24-296O4 from chromosome 14, complete sequence Length = 178348 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 70 ctcagaagagaagaaaacgaa 90 ||||||||||||||||||||| Sbjct: 2606 ctcagaagagaagaaaacgaa 2586
>gb|AE011708.1| Xanthomonas axonopodis pv. citri str. 306, section 86 of 469 of the complete genome Length = 13079 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 305 ccagctcgccgcgcgcgtgcccgcc 329 ||||| ||||||||||||||||||| Sbjct: 813 ccagcacgccgcgcgcgtgcccgcc 789
>dbj|AB020752.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MTH16 Length = 68098 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 75 aagagaagaaaacgaaagaaa 95 ||||||||||||||||||||| Sbjct: 67282 aagagaagaaaacgaaagaaa 67262
>emb|AL662960.3|OSJN00162 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0021F22, complete sequence Length = 181498 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 366 ctgcgcccccgtggccgccgccacc 390 |||||||||| |||||||||||||| Sbjct: 37274 ctgcgcccccttggccgccgccacc 37298
>emb|AL353994.1|ATF17I14 Arabidopsis thaliana DNA chromosome 5, BAC clone F17I14 (ESSA project) Length = 92491 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 75 aagagaagaaaacgaaagaaa 95 ||||||||||||||||||||| Sbjct: 2301 aagagaagaaaacgaaagaaa 2321
>ref|XM_525966.1| PREDICTED: Pan troglodytes similar to Homeobox even-skipped homolog protein 2 (EVX-2) (LOC470585), mRNA Length = 2250 Score = 40.1 bits (20), Expect = 6.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 361 ggcccctgcgcccccgtggccgccgccaccac 392 |||||||||||||||| ||||||||| |||| Sbjct: 2112 ggcccctgcgcccccgccgccgccgccgccac 2081
>ref|XM_470372.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3053 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 373 cccgtggccgccgccaccac 392 |||||||||||||||||||| Sbjct: 250 cccgtggccgccgccaccac 269
>ref|XM_473019.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1116 Score = 40.1 bits (20), Expect = 6.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 200 cgtcgtcgacgacggggccgcagagcgagccg 231 |||||||||||||||| || ||||||| |||| Sbjct: 1072 cgtcgtcgacgacgggcccacagagcgtgccg 1041
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 308 gctcgccgcgcgcgtgcccgccct 331 ||||||||||||| |||||||||| Sbjct: 3323694 gctcgccgcgcgcctgcccgccct 3323717
>gb|AC186367.2| Gallus gallus BAC clone TAM31-55N19 from chromosome 17, complete sequence Length = 181509 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 373 cccgtggccgccgccaccac 392 |||||||||||||||||||| Sbjct: 164640 cccgtggccgccgccaccac 164659
>ref|XM_415487.1| PREDICTED: Gallus gallus similar to TBC1 domain family, member 13 (LOC417204), mRNA Length = 3932 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 373 cccgtggccgccgccaccac 392 |||||||||||||||||||| Sbjct: 2786 cccgtggccgccgccaccac 2767
>gb|AC096856.7| Oryza sativa chromosome 3 BAC OSJNBa0075M12 genomic sequence, complete sequence Length = 130272 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 373 cccgtggccgccgccaccac 392 |||||||||||||||||||| Sbjct: 13852 cccgtggccgccgccaccac 13833
>ref|XM_583872.2| PREDICTED: Bos taurus similar to RIKEN cDNA E130201N16, transcript variant 1 (LOC538952), mRNA Length = 1221 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 228 gccgctgccgtcggccatgg 247 |||||||||||||||||||| Sbjct: 254 gccgctgccgtcggccatgg 235
>ref|XM_865233.1| PREDICTED: Bos taurus similar to RIKEN cDNA E130201N16, transcript variant 2 (LOC538952), mRNA Length = 1466 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 228 gccgctgccgtcggccatgg 247 |||||||||||||||||||| Sbjct: 499 gccgctgccgtcggccatgg 480
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 308 gctcgccgcgcgcgtgcccgccct 331 ||||||||||||| |||||||||| Sbjct: 663335 gctcgccgcgcgcctgcccgccct 663312
>emb|AJ007313.1|SCO007313 Streptomyces coelicolor sigT, trxB and trxA genes, and ORF1 and ORF2 Length = 4026 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 189 gacgagcgagacgtcgtcgacgac 212 |||||||| ||||||||||||||| Sbjct: 1576 gacgagcgtgacgtcgtcgacgac 1599
>gb|AY027656.1| Bos taurus peri-attachment factor (P-AF) mRNA, partial sequence Length = 1673 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 228 gccgctgccgtcggccatgg 247 |||||||||||||||||||| Sbjct: 687 gccgctgccgtcggccatgg 668
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 296 ccgtgaacgccagctcgccgcgcg 319 ||||| |||||||||||||||||| Sbjct: 1855351 ccgtgcacgccagctcgccgcgcg 1855374
>emb|AL356214.20| Human DNA sequence from clone RP11-30E16 on chromosome 10 Contains the C10orf3 gene for chromosome 10 open reading frame 3, the RBP4 gene for retinol binding protein 4 (plasma), the 5' end of the PDE6C gene for phosphodiesterase 6C (cGMP-specific, cone, alpha prime), the GPR120 gene for G protein-coupled receptor 120 and three CpG islands, complete sequence Length = 163964 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 76 agagaagaaaacgaaagaaatgtgaaat 103 ||||||||||| |||||||| ||||||| Sbjct: 68200 agagaagaaaaagaaagaaaagtgaaat 68173
>emb|AL163534.9| Human DNA sequence from clone RP11-207D10 on chromosome 13, complete sequence Length = 15302 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 agagaagaaaacgaaagaaa 95 |||||||||||||||||||| Sbjct: 12574 agagaagaaaacgaaagaaa 12593
>ref|XM_967215.1| PREDICTED: Tribolium castaneum similar to CG17816-PB, isoform B (LOC661025), mRNA Length = 2232 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 372 ccccgtggccgccgccaccacgcg 395 |||||||||||||||| ||||||| Sbjct: 574 ccccgtggccgccgccgccacgcg 551
>gb|AC011596.27| Homo sapiens 12 BAC RP11-117B7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 102500 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 64 atgtttctcagaagagaagaaaac 87 ||||||||||||| |||||||||| Sbjct: 64876 atgtttctcagaacagaagaaaac 64853
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 308 gctcgccgcgcgcgtgcccgccct 331 ||||||||||||| |||||||||| Sbjct: 471950 gctcgccgcgcgcctgcccgccct 471927
>emb|BX294152.1| Pirellula sp. strain 1 complete genome; segment 20/24 Length = 304250 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 199 acgtcgtcgacgacggggccgcag 222 ||||||||||||||| |||||||| Sbjct: 181315 acgtcgtcgacgacgaggccgcag 181292
>emb|AL939118.1|SCO939118 Streptomyces coelicolor A3(2) complete genome; segment 15/29 Length = 303550 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 189 gacgagcgagacgtcgtcgacgac 212 |||||||| ||||||||||||||| Sbjct: 55637 gacgagcgtgacgtcgtcgacgac 55614
>gb|AC025575.21| Homo sapiens 12 BAC RP11-934P3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 158531 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 aagagaagaaaacgaaagaa 94 |||||||||||||||||||| Sbjct: 75413 aagagaagaaaacgaaagaa 75432
>gb|AC116665.1| Papio hamadryas chromosome , clone RP41-119J13, complete sequence Length = 176602 Score = 40.1 bits (20), Expect = 6.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 361 ggcccctgcgcccccgtggccgccgccaccac 392 |||||||||||||||| ||||||||| |||| Sbjct: 20987 ggcccctgcgcccccgccgccgccgccgccac 21018
>ref|XM_939705.1| PREDICTED: Homo sapiens similar to Homeobox even-skipped homolog protein 2 (EVX-2) (LOC650617), mRNA Length = 1611 Score = 40.1 bits (20), Expect = 6.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 361 ggcccctgcgcccccgtggccgccgccaccac 392 |||||| ||||||||| |||||||||||||| Sbjct: 1473 ggccccggcgcccccgccgccgccgccaccac 1442
>ref|XM_292968.5| PREDICTED: Homo sapiens similar to Homeobox even-skipped homolog protein 2 (EVX-2) (LOC344191), mRNA Length = 1611 Score = 40.1 bits (20), Expect = 6.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 361 ggcccctgcgcccccgtggccgccgccaccac 392 |||||| ||||||||| |||||||||||||| Sbjct: 1473 ggccccggcgcccccgccgccgccgccaccac 1442
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 363 cccctgcgcccccgtggccgccgc 386 |||| ||||||||||||||||||| Sbjct: 3147294 ccccggcgcccccgtggccgccgc 3147317
>gb|AC016643.6|AC016643 Homo sapiens chromosome 5 clone RP11-480H11, complete sequence Length = 179969 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 72 cagaagagaagaaaacgaaagaaa 95 |||||||||||||||| ||||||| Sbjct: 170396 cagaagagaagaaaacaaaagaaa 170419
>gb|AC079468.3|AC079468 Homo sapiens chromosome 5 clone RP11-403A7, complete sequence Length = 167656 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 cagaagagaagaaaacgaaagaaa 95 |||||||||||||||| ||||||| Sbjct: 4559 cagaagagaagaaaacaaaagaaa 4536
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 365 cctgcgcccccgtggccgccgcca 388 |||||| ||||||||||||||||| Sbjct: 11855906 cctgcggccccgtggccgccgcca 11855929
>gb|AC010359.5|AC010359 Homo sapiens chromosome 5 clone CTD-2033C11, complete sequence Length = 204843 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 cagaagagaagaaaacgaaagaaa 95 |||||||||||||||| ||||||| Sbjct: 181655 cagaagagaagaaaacaaaagaaa 181632
>gb|AC022509.21|AC022509 Homo sapiens 12 BAC RP11-283G6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 204228 Score = 40.1 bits (20), Expect = 6.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 75 aagagaagaaaacgaaagaaatgtgaaatgtt 106 |||||||||||| ||| || |||||||||||| Sbjct: 106813 aagagaagaaaaggaaggatatgtgaaatgtt 106782
>gb|AC009336.13|AC009336 Homo sapiens chromosome 2, clone RP11-387A1, complete sequence Length = 175667 Score = 40.1 bits (20), Expect = 6.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 361 ggcccctgcgcccccgtggccgccgccaccac 392 |||||| ||||||||| |||||||||||||| Sbjct: 64234 ggccccggcgcccccgccgccgccgccaccac 64265
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 ccagctcgccgcgcgcgtgc 324 |||||||||||||||||||| Sbjct: 3841673 ccagctcgccgcgcgcgtgc 3841654
>gb|AC104487.3| Oryza sativa chromosome 3 BAC OSJNBa0042I09 genomic sequence, complete sequence Length = 171376 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 373 cccgtggccgccgccaccac 392 |||||||||||||||||||| Sbjct: 2529 cccgtggccgccgccaccac 2548
>dbj|AP005931.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0545E05 Length = 163229 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 cgagacgtcgtcgacgacgg 214 |||||||||||||||||||| Sbjct: 133774 cgagacgtcgtcgacgacgg 133755
>dbj|AB124586.1| Pan troglodytes RBP4 gene for retinol binding protein4, complete cds Length = 173042 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 76 agagaagaaaacgaaagaaatgtgaaat 103 ||||||||||| |||||||| ||||||| Sbjct: 162057 agagaagaaaaagaaagaaaagtgaaat 162084
>dbj|AK105781.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-G04, full insert sequence Length = 1415 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 cgagacgtcgtcgacgacgg 214 |||||||||||||||||||| Sbjct: 233 cgagacgtcgtcgacgacgg 214
>dbj|AK100361.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083M02, full insert sequence Length = 1652 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 cgagacgtcgtcgacgacgg 214 |||||||||||||||||||| Sbjct: 223 cgagacgtcgtcgacgacgg 204
>dbj|AK073892.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076M24, full insert sequence Length = 1599 Score = 40.1 bits (20), Expect = 6.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 200 cgtcgtcgacgacggggccgcagagcgagccg 231 |||||||||||||||| || ||||||| |||| Sbjct: 1193 cgtcgtcgacgacgggcccacagagcgtgccg 1162
>dbj|AK070810.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023069M14, full insert sequence Length = 692 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cgagacgtcgtcgacgacgg 214 |||||||||||||||||||| Sbjct: 260 cgagacgtcgtcgacgacgg 279
>dbj|AK067347.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106E16, full insert sequence Length = 3325 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 373 cccgtggccgccgccaccac 392 |||||||||||||||||||| Sbjct: 523 cccgtggccgccgccaccac 542
>dbj|AK066614.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074N01, full insert sequence Length = 3250 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 cgagacgtcgtcgacgacgg 214 |||||||||||||||||||| Sbjct: 35 cgagacgtcgtcgacgacgg 16
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 ccagctcgccgcgcgcgtgc 324 |||||||||||||||||||| Sbjct: 965408 ccagctcgccgcgcgcgtgc 965389
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 365 cctgcgcccccgtggccgccgcca 388 |||||| ||||||||||||||||| Sbjct: 11855577 cctgcggccccgtggccgccgcca 11855600
>emb|CR762419.14| Zebrafish DNA sequence from clone CH211-247A18 in linkage group 12, complete sequence Length = 152153 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 75 aagagaagaaaacgaaagaaatgt 98 |||||||||||| ||||||||||| Sbjct: 17097 aagagaagaaaaagaaagaaatgt 17074
>emb|AL591469.9| Mouse DNA sequence from clone RP23-390D17 on chromosome 11, complete sequence Length = 168981 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 agaagagaagaaaacgaaag 92 |||||||||||||||||||| Sbjct: 137011 agaagagaagaaaacgaaag 136992 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,272,222 Number of Sequences: 3902068 Number of extensions: 3272222 Number of successful extensions: 80536 Number of sequences better than 10.0: 66 Number of HSP's better than 10.0 without gapping: 69 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 78807 Number of HSP's gapped (non-prelim): 1729 length of query: 443 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 421 effective length of database: 17,147,199,772 effective search space: 7218971104012 effective search space used: 7218971104012 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
