Clone Name | rbart35h06 |
---|---|
Clone Library Name | barley_pub |
>gb|BT009239.1| Triticum aestivum clone wlk1.pk0004.e7:fis, full insert mRNA sequence Length = 1415 Score = 920 bits (464), Expect = 0.0 Identities = 538/561 (95%), Gaps = 5/561 (0%) Strand = Plus / Minus Query: 11 gcttcgataaattcaagcagcgattcctggtatggcaaaacaaatctttacaagtcatta 70 |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 1386 gcttcgataaattcgagcagcgattcctggtatggcaaagcaaatctttacaagtcatta 1327 Query: 71 caaagtagagaaagaaggaagtc----cacagttctcaccacacaatactcctgaagctc 126 ||||||||||||||||||||| |||||||||| |||||||| | ||||||||||| Sbjct: 1326 caaagtagagaaagaaggaagaaagctcacagttctcgccacacaaaattcctgaagctc 1267 Query: 127 ttaccgaggacaacaaggacatactagattttgacccatggagcctgtgtctacatatat 186 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 1266 ttaccgaggacaacaaggacatactagattt-gacccatggagcctgtgtctacatatat 1208 Query: 187 tctgaacataataaattggcagttcccctatagactgaatttcacacgggctatcaatcc 246 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 1207 tctgaacataataaattggcagttcccctatagactgaatttcacacgagctatcaatcc 1148 Query: 247 ctcttcactcggtcccttgctgctttagcagagcttgagcgctcggcctgcgagaacatg 306 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 1147 ttcttcactcggtcccttgctgctttcgcagagcttgagcgctcggcctgcgagaacatg 1088 Query: 307 atgaatacatgcataacggcggtcaccattgccaatccagtagcaaagaggatcactcct 366 ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| Sbjct: 1087 atgaatacatgcataacggcggttaccattgccaatccagaagcaaagaggatcactcct 1028 Query: 367 ttccacgttgacaagagctgggtccactgtaagaatctatgagcgccatataggaggaga 426 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 1027 ttccacgtcgacaagagctgggtccactgtaagaatctatgagcaccatataggaggaga 968 Query: 427 catgaccaagacagaaccaccatcaaagatttcactggacgaccaattggtataatttcc 486 |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 967 catgaccaagacaggaccaccatcaaagatttcactggacggccaattggtataatttcc 908 Query: 487 tcatcaaaagtaccagttgttatatgtctgtccaataacgcgtcctttgctacaaatata 546 ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| Sbjct: 907 tcatcaaaagtaccagttgctatatgtttgtccaataacgcgtcctttgctacaaatata 848 Query: 547 tctttgcaccattttgaaaca 567 ||||||||||||||||||||| Sbjct: 847 tctttgcaccattttgaaaca 827
>gb|AF479037.1| Triticum aestivum 1-acy1-glycerol-3-phosphate acyltransferase mRNA, partial cds Length = 714 Score = 113 bits (57), Expect = 6e-22 Identities = 139/166 (83%), Gaps = 3/166 (1%) Strand = Plus / Minus Query: 404 tatgagcgccatataggaggagacatgaccaagacagaaccaccatcaaa-gatttcact 462 ||||||| | ||||||||||||||||| ||| | | | || | |||||| | || || | Sbjct: 713 tatgagcccnatataggaggagacatgnccangccnggnccncnatcaaaagtttncatt 654 Query: 463 ggacgaccaattggtataatttcctcatcaaaagtaccagttgttatatgtctgtcc-aa 521 ||||| | ||| || ||| |||| |||||||||| |||||||| ||||||| ||||| || Sbjct: 653 ggacgccnaatgggaatattttcntcatcaaaag-accagttgctatatgtttgtcccaa 595 Query: 522 taacgcgtcctttgctacaaatatatctttgcaccattttgaaaca 567 ||| ||||| |||||||||||||| ||||||||||||||||||||| Sbjct: 594 taaggcgtcntttgctacaaatatgtctttgcaccattttgaaaca 549
>emb|Z29518.1|ZM1AG3PAT Z.mays (Black Mexican Sweet) mRNA for 1-acyl-glycerol-3-phosphate acyltransferase (putative) Length = 1518 Score = 79.8 bits (40), Expect = 9e-12 Identities = 103/124 (83%) Strand = Plus / Minus Query: 444 caccatcaaagatttcactggacgaccaattggtataatttcctcatcaaaagtaccagt 503 ||||| ||| |||||||||||||| ||||| ||| |||| |||||||| ||||| || || Sbjct: 1053 caccagcaatgatttcactggacggccaataggtctaatctcctcatcgaaagtgcctgt 994 Query: 504 tgttatatgtctgtccaataacgcgtcctttgctacaaatatatctttgcaccattttga 563 || | ||| |||||| ||| || |||||||| ||||| || ||||| ||||||||||| Sbjct: 993 tgccaaatgcttgtccagtaaggcatcctttgccacaaaaatgtctttacaccattttga 934 Query: 564 aaca 567 |||| Sbjct: 933 aaca 930 Score = 48.1 bits (24), Expect = 0.032 Identities = 39/44 (88%) Strand = Plus / Minus Query: 277 gagcttgagcgctcggcctgcgagaacatgatgaatacatgcat 320 ||||| || ||||| ||||| |||||||||||||| |||||||| Sbjct: 1220 gagctcgaccgctcagcctgggagaacatgatgaagacatgcat 1177
>gb|BT016275.1| Zea mays clone Contig108 mRNA sequence Length = 1026 Score = 69.9 bits (35), Expect = 9e-09 Identities = 101/123 (82%) Strand = Plus / Minus Query: 444 caccatcaaagatttcactggacgaccaattggtataatttcctcatcaaaagtaccagt 503 ||||| ||| ||||||||||| || || || ||| |||| |||||||| ||||| || || Sbjct: 488 caccagcaatgatttcactgggcggccgataggtctaatctcctcatcgaaagtgcctgt 429 Query: 504 tgttatatgtctgtccaataacgcgtcctttgctacaaatatatctttgcaccattttga 563 || | |||| |||||| ||| || |||||||| ||||| || ||||| ||||||||||| Sbjct: 428 tgccaaatgtttgtccagtaaggcatcctttgccacaaaaatgtctttacaccattttga 369 Query: 564 aac 566 ||| Sbjct: 368 aac 366 Score = 40.1 bits (20), Expect = 7.7 Identities = 38/44 (86%) Strand = Plus / Minus Query: 277 gagcttgagcgctcggcctgcgagaacatgatgaatacatgcat 320 ||||| || ||||| ||||| |||||||||||||| || ||||| Sbjct: 655 gagctcgaccgctcagcctgggagaacatgatgaagacgtgcat 612
>gb|AC125782.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0095P22, complete sequence Length = 162766 Score = 60.0 bits (30), Expect = 8e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 530 cctttgctacaaatatatctttgcaccattttgaaaca 567 ||||||||||||| || ||||||||||||||||||||| Sbjct: 146631 cctttgctacaaagatgtctttgcaccattttgaaaca 146668 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 277 gagcttgagcgctcggcctgcgagaacatgatgaatacatgcataacggcggtcacca 334 ||||| || ||||| | |||||||||||||||||| |||||||| || || ||||||| Sbjct: 145600 gagctcgatcgctctgactgcgagaacatgatgaagacatgcatgaccgccgtcacca 145657 Score = 50.1 bits (25), Expect = 0.008 Identities = 46/53 (86%) Strand = Plus / Plus Query: 445 accatcaaagatttcactggacgaccaattggtataatttcctcatcaaaagt 497 |||| ||| ||||| ||||| || ||||||||| |||| |||||||||||||| Sbjct: 146431 accagcaatgattttactgggcggccaattggtctaatctcctcatcaaaagt 146483
>gb|AC145349.1| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0096I10, complete sequence Length = 171946 Score = 60.0 bits (30), Expect = 8e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 530 cctttgctacaaatatatctttgcaccattttgaaaca 567 ||||||||||||| || ||||||||||||||||||||| Sbjct: 63467 cctttgctacaaagatgtctttgcaccattttgaaaca 63430 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Minus Query: 277 gagcttgagcgctcggcctgcgagaacatgatgaatacatgcataacggcggtcacca 334 ||||| || ||||| | |||||||||||||||||| |||||||| || || ||||||| Sbjct: 64498 gagctcgatcgctctgactgcgagaacatgatgaagacatgcatgaccgccgtcacca 64441 Score = 50.1 bits (25), Expect = 0.008 Identities = 46/53 (86%) Strand = Plus / Minus Query: 445 accatcaaagatttcactggacgaccaattggtataatttcctcatcaaaagt 497 |||| ||| ||||| ||||| || ||||||||| |||| |||||||||||||| Sbjct: 63667 accagcaatgattttactgggcggccaattggtctaatctcctcatcaaaagt 63615
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 60.0 bits (30), Expect = 8e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 530 cctttgctacaaatatatctttgcaccattttgaaaca 567 ||||||||||||| || ||||||||||||||||||||| Sbjct: 24345522 cctttgctacaaagatgtctttgcaccattttgaaaca 24345559 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 277 gagcttgagcgctcggcctgcgagaacatgatgaatacatgcataacggcggtcacca 334 ||||| || ||||| | |||||||||||||||||| |||||||| || || ||||||| Sbjct: 24344491 gagctcgatcgctctgactgcgagaacatgatgaagacatgcatgaccgccgtcacca 24344548 Score = 50.1 bits (25), Expect = 0.008 Identities = 46/53 (86%) Strand = Plus / Plus Query: 445 accatcaaagatttcactggacgaccaattggtataatttcctcatcaaaagt 497 |||| ||| ||||| ||||| || ||||||||| |||| |||||||||||||| Sbjct: 24345322 accagcaatgattttactgggcggccaattggtctaatctcctcatcaaaagt 24345374
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 60.0 bits (30), Expect = 8e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 530 cctttgctacaaatatatctttgcaccattttgaaaca 567 ||||||||||||| || ||||||||||||||||||||| Sbjct: 24657191 cctttgctacaaagatgtctttgcaccattttgaaaca 24657228 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 277 gagcttgagcgctcggcctgcgagaacatgatgaatacatgcataacggcggtcacca 334 ||||| || ||||| | |||||||||||||||||| |||||||| || || ||||||| Sbjct: 24656160 gagctcgatcgctctgactgcgagaacatgatgaagacatgcatgaccgccgtcacca 24656217 Score = 50.1 bits (25), Expect = 0.008 Identities = 46/53 (86%) Strand = Plus / Plus Query: 445 accatcaaagatttcactggacgaccaattggtataatttcctcatcaaaagt 497 |||| ||| ||||| ||||| || ||||||||| |||| |||||||||||||| Sbjct: 24656991 accagcaatgattttactgggcggccaattggtctaatctcctcatcaaaagt 24657043
>gb|AY109624.1| Zea mays CL2286_1 mRNA sequence Length = 1592 Score = 56.0 bits (28), Expect = 1e-04 Identities = 99/124 (79%) Strand = Plus / Minus Query: 444 caccatcaaagatttcactggacgaccaattggtataatttcctcatcaaaagtaccagt 503 ||||| ||| |||||||||||||| ||||| ||| |||| |||||||| ||||| || || Sbjct: 1132 caccagcaatgatttcactggacggccaataggtctaatctcctcatcgaaagtgcctgt 1073 Query: 504 tgttatatgtctgtccaataacgcgtcctttgctacaaatatatctttgcaccattttga 563 || | ||| |||||| ||| || |||||||| || | ||||| ||||||||||| Sbjct: 1072 tgccaaatgcttgtccagtaaggcatcctttgccacnntnntgtctttacaccattttga 1013 Query: 564 aaca 567 |||| Sbjct: 1012 aaca 1009
>dbj|AB218780.1| Prunus mume Pm22 mRNA for 1-acyl-sn-glycerol-3-phosphate acyltransferase, complete cds Length = 1741 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Minus Query: 515 tgtccaataacgcgtcctttgctacaaatatatctttgcaccatt 559 ||||||| || || ||||| ||||||||||||||||| ||||||| Sbjct: 1047 tgtccaacaatgcatccttggctacaaatatatctttacaccatt 1003
>gb|AF213937.1|AF213937 Prunus dulcis 1-acyl-sn-glycerol-3-phosphate acyltransferase mRNA, complete cds Length = 1396 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Minus Query: 515 tgtccaataacgcgtcctttgctacaaatatatctttgcaccatt 559 ||||||| || || ||||| ||||||||||||||||| ||||||| Sbjct: 794 tgtccaacaatgcatccttggctacaaatatatctttacaccatt 750
>ref|XM_660146.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.20376) partial mRNA Length = 1587 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 181 atatattctgaacataataaat 202 |||||||||||||||||||||| Sbjct: 183 atatattctgaacataataaat 204
>ref|XM_626541.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd2_3540), partial mRNA Length = 7338 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 181 atatattctgaacataataaat 202 |||||||||||||||||||||| Sbjct: 186 atatattctgaacataataaat 207
>emb|AL669974.6| Mouse DNA sequence from clone RP23-229E11 on chromosome X, complete sequence Length = 188048 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 490 tcaaaagtaccagttgttatat 511 |||||||||||||||||||||| Sbjct: 148274 tcaaaagtaccagttgttatat 148253
>gb|AC121847.2| Mus musculus BAC clone RP24-86M13 from 3, complete sequence Length = 190165 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 375 tgacaagagctgggtccactg 395 ||||||||||||||||||||| Sbjct: 28201 tgacaagagctgggtccactg 28181
>gb|AC121897.2| Mus musculus BAC clone RP24-160L24 from 3, complete sequence Length = 143234 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 375 tgacaagagctgggtccactg 395 ||||||||||||||||||||| Sbjct: 66867 tgacaagagctgggtccactg 66847
>gb|AC102786.7| Mus musculus chromosome 1, clone RP23-241G23, complete sequence Length = 160574 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 80 gaaagaaggaagtccacagtt 100 ||||||||||||||||||||| Sbjct: 29739 gaaagaaggaagtccacagtt 29719
>gb|AC164008.2| Mus musculus chromosome 1, clone RP23-311L17, complete sequence Length = 171582 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 80 gaaagaaggaagtccacagtt 100 ||||||||||||||||||||| Sbjct: 55433 gaaagaaggaagtccacagtt 55453
>gb|AC093851.5| Homo sapiens chromosome 4 clone RP11-499N1, complete sequence Length = 200968 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 269 ctttagcagagcttgagcgct 289 ||||||||||||||||||||| Sbjct: 22487 ctttagcagagcttgagcgct 22507
>gb|AE008858.1| Salmonella typhimurium LT2, section 162 of 220 of the complete genome Length = 20646 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 68 ttacaaagtagagaaagaagg 88 ||||||||||||||||||||| Sbjct: 13775 ttacaaagtagagaaagaagg 13755
>emb|AL627281.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18, complete chromosome; segment 17/20 Length = 265050 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 68 ttacaaagtagagaaagaagg 88 ||||||||||||||||||||| Sbjct: 251260 ttacaaagtagagaaagaagg 251280
>gb|AC119566.11| Homo sapiens 12 BAC RP11-41H6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 70009 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 269 ctttagcagagcttgagcgct 289 ||||||||||||||||||||| Sbjct: 26479 ctttagcagagcttgagcgct 26459
>gb|AC073866.16| Homo sapiens 12q BAC RP11-120B18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 153756 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 269 ctttagcagagcttgagcgct 289 ||||||||||||||||||||| Sbjct: 35679 ctttagcagagcttgagcgct 35659
>dbj|AK155807.1| Mus musculus B6-derived CD11 +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F730224K17 product:adenosine A3 receptor, full insert sequence Length = 1664 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 375 tgacaagagctgggtccactg 395 ||||||||||||||||||||| Sbjct: 25 tgacaagagctgggtccactg 45
>dbj|AK154312.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630018K21 product:adenosine A3 receptor, full insert sequence Length = 1799 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 375 tgacaagagctgggtccactg 395 ||||||||||||||||||||| Sbjct: 300 tgacaagagctgggtccactg 320
>ref|NM_009631.1| Mus musculus adenosine A3 receptor (Adora3), mRNA Length = 1733 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 375 tgacaagagctgggtccactg 395 ||||||||||||||||||||| Sbjct: 234 tgacaagagctgggtccactg 254
>dbj|AK013534.1| Mus musculus adult male hippocampus cDNA, RIKEN full-length enriched library, clone:2900016D13 product:A3 ADENOSINE RECEPTOR, full insert sequence Length = 2372 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 375 tgacaagagctgggtccactg 395 ||||||||||||||||||||| Sbjct: 297 tgacaagagctgggtccactg 317
>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 Length = 4585229 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 68 ttacaaagtagagaaagaagg 88 ||||||||||||||||||||| Sbjct: 3411630 ttacaaagtagagaaagaagg 3411610
>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome Length = 4791961 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 68 ttacaaagtagagaaagaagg 88 ||||||||||||||||||||| Sbjct: 4208907 ttacaaagtagagaaagaagg 4208927
>gb|AF069778.1|AF069778 Mus musculus A3 adenosine receptor gene, complete cds Length = 5886 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 375 tgacaagagctgggtccactg 395 ||||||||||||||||||||| Sbjct: 2238 tgacaagagctgggtccactg 2258
>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, complete genome Length = 4755700 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 68 ttacaaagtagagaaagaagg 88 ||||||||||||||||||||| Sbjct: 3559686 ttacaaagtagagaaagaagg 3559666
>gb|AC025786.16| Mus musculus chromosome 3, clone RP23-169H9, complete sequence Length = 181293 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 375 tgacaagagctgggtccactg 395 ||||||||||||||||||||| Sbjct: 162258 tgacaagagctgggtccactg 162238
>gb|AC002070.1|HSAC002070 Human BAC clone 7E17 from 12q, complete sequence Length = 165197 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 269 ctttagcagagcttgagcgct 289 ||||||||||||||||||||| Sbjct: 78224 ctttagcagagcttgagcgct 78244
>gb|AC163015.4| Mus musculus chromosome 3, clone RP23-149I5, complete sequence Length = 200423 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 ccttgctgctttagcagagc 280 |||||||||||||||||||| Sbjct: 70201 ccttgctgctttagcagagc 70220
>gb|AC008334.8| Drosophila melanogaster clone BACR08K05, complete sequence Length = 154336 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 atatattctgaacataataa 200 |||||||||||||||||||| Sbjct: 84150 atatattctgaacataataa 84131
>gb|AC124535.4| Mus musculus BAC clone RP23-331C24 from chromosome 18, complete sequence Length = 206191 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 atggcaaaacaaatctttac 61 |||||||||||||||||||| Sbjct: 201606 atggcaaaacaaatctttac 201625
>gb|AC135115.5| Mus musculus BAC clone RP24-251K13 from chromosome 10, complete sequence Length = 178241 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 tcattacaaagtagagaaag 84 |||||||||||||||||||| Sbjct: 160924 tcattacaaagtagagaaag 160943
>gb|AC112258.4| Mus musculus BAC clone RP23-169M10 from 8, complete sequence Length = 203519 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 tcactcctttccacgttgac 378 |||||||||||||||||||| Sbjct: 1226 tcactcctttccacgttgac 1207
>gb|AC123814.3| Mus musculus BAC clone RP24-235M22 from 10, complete sequence Length = 159486 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 tcattacaaagtagagaaag 84 |||||||||||||||||||| Sbjct: 115855 tcattacaaagtagagaaag 115836
>emb|Z93403.1|HS308O1 Human DNA sequence from clone RP1-308O1 on chromosome Xp11.3-11.4 Contains part of a novel gene, complete sequence Length = 166715 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 ttagcagagcttgagcgctc 290 |||||||||||||||||||| Sbjct: 20824 ttagcagagcttgagcgctc 20843
>emb|AL450313.9| Human DNA sequence from clone RP13-259N13 on chromosome 10 Contains a novel gene, complete sequence Length = 43981 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 ttagcagagcttgagcgctc 290 |||||||||||||||||||| Sbjct: 12580 ttagcagagcttgagcgctc 12599
>emb|CR550304.13| Zebrafish DNA sequence from clone CH211-150I13 in linkage group 13, complete sequence Length = 118999 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 cattacaaagtagagaaaga 85 |||||||||||||||||||| Sbjct: 108411 cattacaaagtagagaaaga 108392
>emb|AL845317.7| Mouse DNA sequence from clone RP23-222K9 on chromosome 4 Contains a ribosomal protein L7 (Rpl7) pseudogene, the gene for a novel protein similar to stathmin 1 Stmn1 and a eukaryotic translation initiation factor 3 subunit 8 (Eif3s8) pseudogene, complete sequence Length = 181889 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 tagagaaagaaggaagtcca 95 |||||||||||||||||||| Sbjct: 19784 tagagaaagaaggaagtcca 19803
>dbj|AK140684.1| Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:B930089B07 product:unclassifiable, full insert sequence Length = 1754 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 tgtctacatatattctgaac 193 |||||||||||||||||||| Sbjct: 1459 tgtctacatatattctgaac 1440
>dbj|AK138093.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130090I24 product:protein-L-isoaspartate (D-aspartate) O-methyltransferase 1, full insert sequence Length = 4596 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 tgtctacatatattctgaac 193 |||||||||||||||||||| Sbjct: 3842 tgtctacatatattctgaac 3823
>dbj|AK148789.1| Mus musculus 2 days neonate sympathetic ganglion cDNA, RIKEN full-length enriched library, clone:7120446L02 product:protein-L-isoaspartate (D-aspartate) O-methyltransferase 1, full insert sequence Length = 1370 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 tgtctacatatattctgaac 193 |||||||||||||||||||| Sbjct: 1098 tgtctacatatattctgaac 1079
>gb|AC156391.6| Mus musculus 10 BAC RP24-258P4 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 186703 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 tgtctacatatattctgaac 193 |||||||||||||||||||| Sbjct: 136459 tgtctacatatattctgaac 136440
>gb|AC012489.8| Homo sapiens BAC clone RP11-93I3 from 2, complete sequence Length = 120776 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 421 aggagacatgaccaagacag 440 |||||||||||||||||||| Sbjct: 89279 aggagacatgaccaagacag 89298
>ref|XM_221028.3| PREDICTED: Rattus norvegicus similar to KIAA1636 protein (predicted) (LOC303599), mRNA Length = 6882 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 aagaaggaagtccacagttc 101 |||||||||||||||||||| Sbjct: 4263 aagaaggaagtccacagttc 4244
>gb|AC139868.4| Mus musculus BAC clone RP23-366P1 from chromosome 18, complete sequence Length = 154607 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 atggcaaaacaaatctttac 61 |||||||||||||||||||| Sbjct: 107203 atggcaaaacaaatctttac 107184
>gb|AC002072.1|AC002072 Human PAC clone RP1-218B13 from Xq23, complete sequence Length = 114956 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 aaagtagagaaagaaggaag 91 |||||||||||||||||||| Sbjct: 54618 aaagtagagaaagaaggaag 54637
>gb|AE003496.4| Drosophila melanogaster chromosome X, section 48 of 74 of the complete sequence Length = 299868 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 atatattctgaacataataa 200 |||||||||||||||||||| Sbjct: 268699 atatattctgaacataataa 268680
>emb|AL929332.15| Mouse DNA sequence from clone RP23-476I19 on chromosome 2, complete sequence Length = 112785 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 agttctcaccacacaatact 116 |||||||||||||||||||| Sbjct: 97700 agttctcaccacacaatact 97681
>gb|AC155170.3| Mus musculus BAC clone RP23-116K3 from chromosome 8, complete sequence Length = 228121 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 tcactcctttccacgttgac 378 |||||||||||||||||||| Sbjct: 81029 tcactcctttccacgttgac 81010 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,143,905 Number of Sequences: 3902068 Number of extensions: 5143905 Number of successful extensions: 104564 Number of sequences better than 10.0: 54 Number of HSP's better than 10.0 without gapping: 54 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 104347 Number of HSP's gapped (non-prelim): 213 length of query: 567 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 544 effective length of database: 17,143,297,704 effective search space: 9325953950976 effective search space used: 9325953950976 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)