ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart35h04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EXB1A_MAIZE (P58738) Beta-expansin 1a precursor (Pollen allergen... 46 4e-05
2EXB1B_MAIZE (Q07154) Beta-expansin 1b (Pollen allergen Zea m 1) ... 46 5e-05
3EXPB4_ARATH (Q9SHD1) Putative beta-expansin 4 precursor (AtEXPB4... 40 0.002
4EXPB2_ARATH (Q9SHY6) Putative beta-expansin 2 precursor (AtEXPB2... 40 0.002
5MPAC1_CYNDA (O04701) Major pollen allergen Cyn d 1 40 0.004
6EXPB5_ARATH (Q9M203) Putative beta-expansin 5 precursor (AtEXPB5... 33 0.28
7EXPB3_ARATH (Q9M0I2) Beta-expansin 3 precursor (AtEXPB3) (At-EXP... 33 0.36
8NPYR_DROME (P25931) Neuropeptide Y receptor (NPY-R) (PR4 receptor) 32 0.81
9EXPB1_ARATH (Q9SKU2) Beta-expansin 1 precursor (AtEXPB1) (At-EXP... 31 1.4
10MPAP1_PHLPR (P43213) Pollen allergen Phl p 1 precursor (Phl p I) 29 6.8
11FADL_SHIFL (P59741) Long-chain fatty acid transport protein prec... 28 8.9
12FADL_ECOLI (P10384) Long-chain fatty acid transport protein prec... 28 8.9
13FADL_ECO57 (Q8XCN6) Long-chain fatty acid transport protein prec... 28 8.9
14NPY5R_HUMAN (Q15761) Neuropeptide Y receptor type 5 (NPY5-R) (NP... 28 8.9

>EXB1A_MAIZE (P58738) Beta-expansin 1a precursor (Pollen allergen Zea m 1) (Zea|
           m I)
          Length = 269

 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 20/30 (66%), Positives = 25/30 (83%)
 Frame = -1

Query: 464 TSDSGKKLVANNVIPANWRPNTDYRSFVQF 375
           TS+SGKK++A +VIPANWRP+  Y S VQF
Sbjct: 239 TSESGKKVIAKDVIPANWRPDAVYTSNVQF 268



to top

>EXB1B_MAIZE (Q07154) Beta-expansin 1b (Pollen allergen Zea m 1) (Zea m I)|
           (Fragment)
          Length = 191

 Score = 45.8 bits (107), Expect = 5e-05
 Identities = 19/30 (63%), Positives = 25/30 (83%)
 Frame = -1

Query: 464 TSDSGKKLVANNVIPANWRPNTDYRSFVQF 375
           TS+SGKK++A ++IPANWRP+  Y S VQF
Sbjct: 161 TSESGKKVIAKDIIPANWRPDAVYTSNVQF 190



to top

>EXPB4_ARATH (Q9SHD1) Putative beta-expansin 4 precursor (AtEXPB4) (At-EXPB4)|
           (Ath-ExpBeta-1.1)
          Length = 259

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = -1

Query: 464 TSDSGKKLVANNVIPANWRPNTDYRSFVQF 375
           + +S K +VA NVIPANW+P+  YRS V F
Sbjct: 230 SGESHKVIVAYNVIPANWKPDESYRSIVNF 259



to top

>EXPB2_ARATH (Q9SHY6) Putative beta-expansin 2 precursor (AtEXPB2) (At-EXPB2)|
           (Ath-ExpBeta-1.4)
          Length = 273

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 17/28 (60%), Positives = 22/28 (78%)
 Frame = -1

Query: 458 DSGKKLVANNVIPANWRPNTDYRSFVQF 375
           +SGK +VA+NVIPANW+P   Y+S V F
Sbjct: 246 ESGKTVVASNVIPANWQPGAIYKSNVNF 273



to top

>MPAC1_CYNDA (O04701) Major pollen allergen Cyn d 1|
          Length = 246

 Score = 39.7 bits (91), Expect = 0.004
 Identities = 17/30 (56%), Positives = 23/30 (76%)
 Frame = -1

Query: 464 TSDSGKKLVANNVIPANWRPNTDYRSFVQF 375
           TS+ G  LV ++VIPANW+P+T Y S +QF
Sbjct: 215 TSEGGAHLVQDDVIPANWKPDTVYTSKLQF 244



to top

>EXPB5_ARATH (Q9M203) Putative beta-expansin 5 precursor (AtEXPB5) (At-EXPB5)|
           (Ath-ExpBeta-1.3)
          Length = 264

 Score = 33.5 bits (75), Expect = 0.28
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -1

Query: 455 SGKKLVANNVIPANWRPNTDYRSFVQF 375
           SGKK++A  VIP  W P   Y S V F
Sbjct: 231 SGKKIIAKGVIPEKWSPGAIYHSKVNF 257



to top

>EXPB3_ARATH (Q9M0I2) Beta-expansin 3 precursor (AtEXPB3) (At-EXPB3)|
           (Ath-ExpBeta-1.6)
          Length = 264

 Score = 33.1 bits (74), Expect = 0.36
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 464 TSDSGKKLVANNVIPANWRPNTDYRSFVQFS 372
           T  +GK L A +V+P NW P   Y S + FS
Sbjct: 231 TLSAGKTLSATDVVPRNWAPKATYSSRLNFS 261



to top

>NPYR_DROME (P25931) Neuropeptide Y receptor (NPY-R) (PR4 receptor)|
          Length = 464

 Score = 32.0 bits (71), Expect = 0.81
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 9/51 (17%)
 Frame = -2

Query: 130 WF---ACALP-PTDSVYGVPCITWH-----YLCVTKIPNQSYKLYYTYSLF 5
           WF   A ALP P  S   +P   WH     Y+C    P+++ + YYT SLF
Sbjct: 229 WFIALATALPIPIVSGLDIPMSPWHTKCEKYICREMWPSRTQEYYYTLSLF 279



to top

>EXPB1_ARATH (Q9SKU2) Beta-expansin 1 precursor (AtEXPB1) (At-EXPB1)|
           (Ath-ExpBeta-1.5)
          Length = 271

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 464 TSDSGKKLVANNVIPANWRPNTDYRSFVQFS 372
           T  + K L A +VIP+NW P   Y S + FS
Sbjct: 238 TLSNNKTLSATDVIPSNWVPKATYTSRLNFS 268



to top

>MPAP1_PHLPR (P43213) Pollen allergen Phl p 1 precursor (Phl p I)|
          Length = 263

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 464 TSDSGKKLVANNVIPANWRPNTDYRS 387
           T++ G K  A +VIP  W+ +T Y S
Sbjct: 237 TTEGGTKTEAEDVIPEGWKADTSYES 262



to top

>FADL_SHIFL (P59741) Long-chain fatty acid transport protein precursor (Outer|
           membrane fadL protein) (Outer membrane flp protein)
          Length = 448

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 464 TSDSGKKLVANNVIPANWRPNTDY 393
           TS SG+ L A+N+ P  W PN  +
Sbjct: 88  TSPSGRSLKADNIAPTAWVPNMHF 111



to top

>FADL_ECOLI (P10384) Long-chain fatty acid transport protein precursor (Outer|
           membrane fadL protein) (Outer membrane flp protein)
          Length = 448

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 464 TSDSGKKLVANNVIPANWRPNTDY 393
           TS SG+ L A+N+ P  W PN  +
Sbjct: 88  TSPSGRSLKADNIAPTAWVPNMHF 111



to top

>FADL_ECO57 (Q8XCN6) Long-chain fatty acid transport protein precursor (Outer|
           membrane fadL protein) (Outer membrane flp protein)
          Length = 448

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 464 TSDSGKKLVANNVIPANWRPNTDY 393
           TS SG+ L A+N+ P  W PN  +
Sbjct: 88  TSPSGRSLKADNIAPTAWVPNMHF 111



to top

>NPY5R_HUMAN (Q15761) Neuropeptide Y receptor type 5 (NPY5-R) (NPY-Y5 receptor)|
           (Y5 receptor) (NPYY5)
          Length = 455

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 118 ALPPTDSVYGVPCITWHYLCVTKIPNQSYKLYYTYSL 8
           +L      +G   ++  YLCV   P+ SY++ +T SL
Sbjct: 189 SLVELQETFGSALLSSRYLCVESWPSDSYRIAFTISL 225


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,375,646
Number of Sequences: 219361
Number of extensions: 1295310
Number of successful extensions: 3692
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3691
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top