ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart35h03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC025353.9| Mus musculus chromosome 9, clone RP23-93E19, comp... 36 5.5
2gb|AC093512.2| Homo sapiens chromosome 16 clone CTD-2515O10, com... 36 5.5
3gb|AC152718.6| Mus musculus BAC clone RP24-432B3 from chromosome... 36 5.5
4gb|AC145303.4| Mus musculus BAC clone RP23-411P20 from 14, compl... 36 5.5
5emb|AL731806.13| Mouse DNA sequence from clone RP23-329N12 on ch... 36 5.5

>gb|AC025353.9| Mus musculus chromosome 9, clone RP23-93E19, complete sequence
          Length = 274853

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 14    accccccatggtcccttg 31
             ||||||||||||||||||
Sbjct: 29629 accccccatggtcccttg 29612



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>gb|AC093512.2| Homo sapiens chromosome 16 clone CTD-2515O10, complete sequence
          Length = 157481

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 13    aaccccccatggtccctt 30
             ||||||||||||||||||
Sbjct: 39957 aaccccccatggtccctt 39974



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>gb|AC152718.6| Mus musculus BAC clone RP24-432B3 from chromosome 9, complete sequence
          Length = 174264

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 14     accccccatggtcccttg 31
              ||||||||||||||||||
Sbjct: 119632 accccccatggtcccttg 119615



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>gb|AC145303.4| Mus musculus BAC clone RP23-411P20 from 14, complete sequence
          Length = 190168

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 7    accgggaaccccccatgg 24
            ||||||||||||||||||
Sbjct: 5279 accgggaaccccccatgg 5262



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>emb|AL731806.13| Mouse DNA sequence from clone RP23-329N12 on chromosome 9, complete
             sequence
          Length = 89170

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 14    accccccatggtcccttg 31
             ||||||||||||||||||
Sbjct: 77793 accccccatggtcccttg 77810


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 270,338
Number of Sequences: 3902068
Number of extensions: 270338
Number of successful extensions: 63778
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63766
Number of HSP's gapped (non-prelim): 12
length of query: 45
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 25
effective length of database: 17,155,003,908
effective search space: 428875097700
effective search space used: 428875097700
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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