>PO3F3_RAT (Q63262) POU domain, class 3, transcription factor 3|
           (Brain-specific homeobox/POU domain protein 1) (Brain-1)
           (Brn-1 protein)
          Length = 497

 Score = 32.0 bits (71), Expect = 0.46
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -1

Query: 166 HDGGGVGPALQGQEPGRGPCTPTRQDLNE 80
           H GGG GP L   +P     TPT  DL +
Sbjct: 293 HGGGGAGPGLNSHDPHSDEDTPTSDDLEQ 321

>PO3F3_MOUSE (P31361) POU domain, class 3, transcription factor 3|
           (Brain-specific homeobox/POU domain protein 1) (Brain-1)
           (Brn-1 protein)
          Length = 495

 Score = 32.0 bits (71), Expect = 0.46
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -1

Query: 166 HDGGGVGPALQGQEPGRGPCTPTRQDLNE 80
           H GGG GP L   +P     TPT  DL +
Sbjct: 291 HGGGGAGPGLNSHDPHSDEDTPTSDDLEQ 319

>PO3F3_HUMAN (P20264) POU domain, class 3, transcription factor 3|
           (Brain-specific homeobox/POU domain protein 1) (Brain-1)
           (Brn-1 protein)
          Length = 500

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 160 GGGVGPALQGQEPGRGPCTPTRQDLNE 80
           GGG GP L   +P     TPT  DL +
Sbjct: 298 GGGAGPGLNSHDPHSDEDTPTSDDLEQ 324

>HN_SV41 (P25180) Hemagglutinin-neuraminidase (EC 3.2.1.18)|
          Length = 568

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 114 PRPGSWPCSAGPTPPPSC 167
           PRPG+ PCSAG   P +C
Sbjct: 442 PRPGAQPCSAGNFCPANC 459

>UB2Q1_MOUSE (Q7TSS2) Ubiquitin-conjugating enzyme E2 Q1 (EC 6.3.2.19)|
           (Ubiquitin-protein ligase Q1) (Ubiquitin carrier protein
           Q1)
          Length = 422

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -1

Query: 160 GGGVGPALQGQEPGRGPCTPTRQDLNESRFHLLYEQVQVCN 38
           G G GP   G  PG GPC      L ES FH  +E+ ++ +
Sbjct: 26  GAGGGP---GGGPGPGPCLRRELKLLESIFHRGHERFRIAS 63

>UB2Q1_HUMAN (Q7Z7E8) Ubiquitin-conjugating enzyme E2 Q1 (EC 6.3.2.19)|
           (Ubiquitin-protein ligase Q1) (Ubiquitin carrier protein
           Q1) (Protein NICE-5)
          Length = 422

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -1

Query: 160 GGGVGPALQGQEPGRGPCTPTRQDLNESRFHLLYEQVQVCN 38
           G G GP   G  PG GPC      L ES FH  +E+ ++ +
Sbjct: 26  GAGGGP---GGGPGPGPCLRRELKLLESIFHRGHERFRIAS 63

>HDAC7_MOUSE (Q8C2B3) Histone deacetylase 7a (HD7a)|
          Length = 938

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 4/24 (16%)
 Frame = -1

Query: 169 EHDGGGVGP----ALQGQEPGRGP 110
           E DGGGVGP     L+ +E GRGP
Sbjct: 403 ETDGGGVGPMANDGLEHRESGRGP 426

>POLS2_RAT (Q5K2P9) Polyserase-2 precursor (EC 3.4.21.-) (Polyserine protease|
           2)
          Length = 875

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 108 QGPRPGSWPCSAGPTPPPSCSC 173
           + PRPG+WP  A  T P S  C
Sbjct: 351 KAPRPGTWPWEAQVTVPGSTPC 372

>TFB2_YEAST (Q02939) RNA polymerase II transcription factor B subunit 2 (RNA|
           polymerase II transcription factor B p52 subunit) (RNA
           polymerase II transcription factor B 52 kDa subunit)
           (General transcription and DNA repair factor IIH subunit
           TFB2) (TFIIH
          Length = 513

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 70  ESEIHSDPDVLECRDPVQALGPVVPDQLR 156
           E ++  DP+   C++P+Q L P V DQ+R
Sbjct: 417 EKKLELDPN---CKEPLQVLPPTVVDQIR 442

>XLRS1_FUGRU (Q9W6R5) Retinoschisin precursor (X-linked juvenile retinoschisis|
           protein homolog)
          Length = 280

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -2

Query: 171 RSTTVAELVRH-YRAKSLDGVPALQHVRI*MNLAFICCMNKC 49
           RS++V  L+R    A+ +  +P   H RI + L  + CMNKC
Sbjct: 238 RSSSVQNLLRPPIVARYIRILPLGWHTRIALRLELLLCMNKC 279

>ASCL2_HUMAN (Q99929) Achaete-scute homolog 2 (HASH2)|
          Length = 193

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +3

Query: 123 GSWPCSAGPTPPPSCSCTARRR 188
           G+ P SA P PP    C ARRR
Sbjct: 4   GTLPRSAPPAPPVPVGCAARRR 25

>HCRA_THAAR (O33819) 4-hydroxybenzoyl-CoA reductase alpha subunit (EC|
           1.3.99.20)
          Length = 769

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 188 PAARGTGARRWRSWSGTTGPRAWTGSLHSNTS 93
           P  RG G       SGT+ P+ WTG  H+  +
Sbjct: 432 PKGRGLGIALSHFVSGTSTPKHWTGEPHATVN 463

>KLEG1_ECOLI (Q52282) Putative protein kleG|
          Length = 87

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 7/32 (21%)
 Frame = +3

Query: 114 PRPGSWPCSAGPTPPP----SC---SCTARRR 188
           PR  SWPCSA P P      +C    C +RRR
Sbjct: 8   PRGKSWPCSAPPWPSSRTGWACLPRRCASRRR 39


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,977,668
Number of Sequences: 219361
Number of extensions: 543292
Number of successful extensions: 2665
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2662
length of database: 80,573,946
effective HSP length: 39
effective length of database: 72,018,867
effective search space used: 1728452808
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)