ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart35g10 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 270 bits (136), Expect = 4e-69 Identities = 226/256 (88%) Strand = Plus / Minus Query: 142 cgtagcacttcttcctaatctctccctcagctccggtgagcacgccgacgtcgcccatct 201 |||||||||||||||| ||||| || || ||||||||||||||| |||||| |||||||| Sbjct: 16679506 cgtagcacttcttcctgatctcgccgtcggctccggtgagcacggcgacgttgcccatct 16679447 Query: 202 tgatcatggacgcgctgaagtccttaaagaactcgtcgtcgaacttgccggtggcgatgc 261 || |||||||| ||| ||||||| | |||||||||||||||||||||||||||||||| | Sbjct: 16679446 tggtcatggactcgccgaagtccctgaagaactcgtcgtcgaacttgccggtggcgatac 16679387 Query: 262 gctggacgtagtctttggtggtgtcgtcgaagaggagagccgcgtcggagcggaagaggc 321 |||| |||||| | |||||||| ||||| |||||| | ||||||||| |||||| | Sbjct: 16679386 gctgcacgtagcccctggtggtggcgtcggtgaggagcgaggcgtcggaggagaagagcc 16679327 Query: 322 ccctccgcttggcgacgtggcggtagtagctggtgtcgaaggtcttgaagctcccggggt 381 |||||||||||||||| ||||||||||||||||||||||| |||||| |||| ||||||| Sbjct: 16679326 ccctccgcttggcgacatggcggtagtagctggtgtcgaacgtcttgtagctgccggggt 16679267 Query: 382 ccatctccgacagcat 397 ||||||||||| |||| Sbjct: 16679266 ccatctccgacggcat 16679251 Score = 204 bits (103), Expect = 2e-49 Identities = 211/247 (85%) Strand = Plus / Minus Query: 142 cgtagcacttcttcctaatctctccctcagctccggtgagcacgccgacgtcgcccatct 201 |||||||||||||||| |||||||| || | ||||||||||| ||||| |||||||| Sbjct: 11403508 cgtagcacttcttcctgatctctccttcctccccggtgagcacctggacgttgcccatct 11403449 Query: 202 tgatcatggacgcgctgaagtccttaaagaactcgtcgtcgaacttgccggtggcgatgc 261 || |||||||| ||| |||||| | ||||||||| |||||||||||||||||||||| | Sbjct: 11403448 tggtcatggactcgccgaagtcgctgaagaactcggcgtcgaacttgccggtggcgatcc 11403389 Query: 262 gctggacgtagtctttggtggtgtcgtcgaagaggagagccgcgtcggagcggaagaggc 321 || | |||||||| |||||||| ||||| ||| || | |||||||||| |||||| | Sbjct: 11403388 gccgcacgtagtccctggtggtggcgtcggtgagcagcgacgcgtcggaggagaagagcc 11403329 Query: 322 ccctccgcttggcgacgtggcggtagtagctggtgtcgaaggtcttgaagctcccggggt 381 |||||||||| ||||| ||||||||||||||||||||||| |||||| |||| || |||| Sbjct: 11403328 ccctccgcttcgcgacatggcggtagtagctggtgtcgaacgtcttgtagctgcccgggt 11403269 Query: 382 ccatctc 388 ||||||| Sbjct: 11403268 ccatctc 11403262
>dbj|AP003577.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0664F03 Length = 184242 Score = 270 bits (136), Expect = 4e-69 Identities = 226/256 (88%) Strand = Plus / Minus Query: 142 cgtagcacttcttcctaatctctccctcagctccggtgagcacgccgacgtcgcccatct 201 |||||||||||||||| ||||| || || ||||||||||||||| |||||| |||||||| Sbjct: 30993 cgtagcacttcttcctgatctcgccgtcggctccggtgagcacggcgacgttgcccatct 30934 Query: 202 tgatcatggacgcgctgaagtccttaaagaactcgtcgtcgaacttgccggtggcgatgc 261 || |||||||| ||| ||||||| | |||||||||||||||||||||||||||||||| | Sbjct: 30933 tggtcatggactcgccgaagtccctgaagaactcgtcgtcgaacttgccggtggcgatac 30874 Query: 262 gctggacgtagtctttggtggtgtcgtcgaagaggagagccgcgtcggagcggaagaggc 321 |||| |||||| | |||||||| ||||| |||||| | ||||||||| |||||| | Sbjct: 30873 gctgcacgtagcccctggtggtggcgtcggtgaggagcgaggcgtcggaggagaagagcc 30814 Query: 322 ccctccgcttggcgacgtggcggtagtagctggtgtcgaaggtcttgaagctcccggggt 381 |||||||||||||||| ||||||||||||||||||||||| |||||| |||| ||||||| Sbjct: 30813 ccctccgcttggcgacatggcggtagtagctggtgtcgaacgtcttgtagctgccggggt 30754 Query: 382 ccatctccgacagcat 397 ||||||||||| |||| Sbjct: 30753 ccatctccgacggcat 30738
>tpe|BN000609.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx80 gene for class III peroxidase 80 precursor, exons 1-2 Length = 1149 Score = 270 bits (136), Expect = 4e-69 Identities = 226/256 (88%) Strand = Plus / Minus Query: 142 cgtagcacttcttcctaatctctccctcagctccggtgagcacgccgacgtcgcccatct 201 |||||||||||||||| ||||| || || ||||||||||||||| |||||| |||||||| Sbjct: 1138 cgtagcacttcttcctgatctcgccgtcggctccggtgagcacggcgacgttgcccatct 1079 Query: 202 tgatcatggacgcgctgaagtccttaaagaactcgtcgtcgaacttgccggtggcgatgc 261 || |||||||| ||| ||||||| | |||||||||||||||||||||||||||||||| | Sbjct: 1078 tggtcatggactcgccgaagtccctgaagaactcgtcgtcgaacttgccggtggcgatac 1019 Query: 262 gctggacgtagtctttggtggtgtcgtcgaagaggagagccgcgtcggagcggaagaggc 321 |||| |||||| | |||||||| ||||| |||||| | ||||||||| |||||| | Sbjct: 1018 gctgcacgtagcccctggtggtggcgtcggtgaggagcgaggcgtcggaggagaagagcc 959 Query: 322 ccctccgcttggcgacgtggcggtagtagctggtgtcgaaggtcttgaagctcccggggt 381 |||||||||||||||| ||||||||||||||||||||||| |||||| |||| ||||||| Sbjct: 958 ccctccgcttggcgacatggcggtagtagctggtgtcgaacgtcttgtagctgccggggt 899 Query: 382 ccatctccgacagcat 397 ||||||||||| |||| Sbjct: 898 ccatctccgacggcat 883
>dbj|AP006164.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1386G10 Length = 121827 Score = 204 bits (103), Expect = 2e-49 Identities = 211/247 (85%) Strand = Plus / Minus Query: 142 cgtagcacttcttcctaatctctccctcagctccggtgagcacgccgacgtcgcccatct 201 |||||||||||||||| |||||||| || | ||||||||||| ||||| |||||||| Sbjct: 91217 cgtagcacttcttcctgatctctccttcctccccggtgagcacctggacgttgcccatct 91158 Query: 202 tgatcatggacgcgctgaagtccttaaagaactcgtcgtcgaacttgccggtggcgatgc 261 || |||||||| ||| |||||| | ||||||||| |||||||||||||||||||||| | Sbjct: 91157 tggtcatggactcgccgaagtcgctgaagaactcggcgtcgaacttgccggtggcgatcc 91098 Query: 262 gctggacgtagtctttggtggtgtcgtcgaagaggagagccgcgtcggagcggaagaggc 321 || | |||||||| |||||||| ||||| ||| || | |||||||||| |||||| | Sbjct: 91097 gccgcacgtagtccctggtggtggcgtcggtgagcagcgacgcgtcggaggagaagagcc 91038 Query: 322 ccctccgcttggcgacgtggcggtagtagctggtgtcgaaggtcttgaagctcccggggt 381 |||||||||| ||||| ||||||||||||||||||||||| |||||| |||| || |||| Sbjct: 91037 ccctccgcttcgcgacatggcggtagtagctggtgtcgaacgtcttgtagctgcccgggt 90978 Query: 382 ccatctc 388 ||||||| Sbjct: 90977 ccatctc 90971
>tpe|BN000607.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx78 gene for class III peroxidase 78 precursor, exons 1-2 Length = 1093 Score = 204 bits (103), Expect = 2e-49 Identities = 211/247 (85%) Strand = Plus / Minus Query: 142 cgtagcacttcttcctaatctctccctcagctccggtgagcacgccgacgtcgcccatct 201 |||||||||||||||| |||||||| || | ||||||||||| ||||| |||||||| Sbjct: 1079 cgtagcacttcttcctgatctctccttcctccccggtgagcacctggacgttgcccatct 1020 Query: 202 tgatcatggacgcgctgaagtccttaaagaactcgtcgtcgaacttgccggtggcgatgc 261 || |||||||| ||| |||||| | ||||||||| |||||||||||||||||||||| | Sbjct: 1019 tggtcatggactcgccgaagtcgctgaagaactcggcgtcgaacttgccggtggcgatcc 960 Query: 262 gctggacgtagtctttggtggtgtcgtcgaagaggagagccgcgtcggagcggaagaggc 321 || | |||||||| |||||||| ||||| ||| || | |||||||||| |||||| | Sbjct: 959 gccgcacgtagtccctggtggtggcgtcggtgagcagcgacgcgtcggaggagaagagcc 900 Query: 322 ccctccgcttggcgacgtggcggtagtagctggtgtcgaaggtcttgaagctcccggggt 381 |||||||||| ||||| ||||||||||||||||||||||| |||||| |||| || |||| Sbjct: 899 ccctccgcttcgcgacatggcggtagtagctggtgtcgaacgtcttgtagctgcccgggt 840 Query: 382 ccatctc 388 ||||||| Sbjct: 839 ccatctc 833
>gb|AY751451.1| Panicum virgatum cultivar Nebraska-28 genomic sequence Length = 382 Score = 91.7 bits (46), Expect = 2e-15 Identities = 76/86 (88%) Strand = Plus / Minus Query: 304 cgtcggagcggaagaggcccctccgcttggcgacgtggcggtagtagctggtgtcgaagg 363 |||| ||| ||||||||||||| ||| |||| ||||||| |||||||||| |||||||| Sbjct: 258 cgtccgagtggaagaggcccctgcgcctggccacgtggccgtagtagctgaggtcgaagg 199 Query: 364 tcttgaagctcccggggtccatctcc 389 |||||||||| || |||||||||||| Sbjct: 198 tcttgaagctgcccgggtccatctcc 173
>gb|AY751450.1| Cynodon dactylon var. aridus cultivar Midlawn genomic sequence Length = 498 Score = 91.7 bits (46), Expect = 2e-15 Identities = 76/86 (88%) Strand = Plus / Minus Query: 304 cgtcggagcggaagaggcccctccgcttggcgacgtggcggtagtagctggtgtcgaagg 363 |||| ||| |||| ||||||||||||||||||||||||| ||||||| | |||||||| Sbjct: 387 cgtccgagtggaacaggcccctccgcttggcgacgtggccgtagtagttcaggtcgaagg 328 Query: 364 tcttgaagctcccggggtccatctcc 389 |||||||||| || |||||||||||| Sbjct: 327 tcttgaagctgcccgggtccatctcc 302
>ref|XM_473984.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 987 Score = 69.9 bits (35), Expect = 7e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 331 tggcgacgtggcggtagtagctggtgtcgaaggtcttgaagctcccggggtccatctcc 389 |||||| ||| | |||||||||||||||||| ||| |||||||||| |||||||||||| Sbjct: 784 tggcgatgtgcctgtagtagctggtgtcgaacgtcctgaagctccccgggtccatctcc 726
>gb|AC125783.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0039K08, complete sequence Length = 122163 Score = 69.9 bits (35), Expect = 7e-09 Identities = 56/63 (88%) Strand = Plus / Minus Query: 142 cgtagcacttcttcctaatctctccctcagctccggtgagcacgccgacgtcgcccatct 201 |||||||||||||||| ||||| || || | |||||||||||||||||| ||||||||| Sbjct: 17988 cgtagcacttcttcctgatctcgccttcgccgccggtgagcacgccgacgccgcccatct 17929 Query: 202 tga 204 ||| Sbjct: 17928 tga 17926 Score = 61.9 bits (31), Expect = 2e-06 Identities = 76/91 (83%) Strand = Plus / Minus Query: 305 gtcggagcggaagaggcccctccgcttggcgacgtggcggtagtagctggtgtcgaaggt 364 ||||||| ||||||| |||| |||| | || || | |||||||||| || ||||||||| Sbjct: 17825 gtcggagtggaagagcccccgccgcctcgccaccagccggtagtagccggcgtcgaaggt 17766 Query: 365 cttgaagctcccggggtccatctccgacagc 395 ||||||||||||||||||||||| |||| Sbjct: 17765 gaggaagctcccggggtccatctccgccagc 17735
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 69.9 bits (35), Expect = 7e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 331 tggcgacgtggcggtagtagctggtgtcgaaggtcttgaagctcccggggtccatctcc 389 |||||| ||| | |||||||||||||||||| ||| |||||||||| |||||||||||| Sbjct: 32006537 tggcgatgtgcctgtagtagctggtgtcgaacgtcctgaagctccccgggtccatctcc 32006479
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 69.9 bits (35), Expect = 7e-09 Identities = 56/63 (88%) Strand = Plus / Minus Query: 142 cgtagcacttcttcctaatctctccctcagctccggtgagcacgccgacgtcgcccatct 201 |||||||||||||||| ||||| || || | |||||||||||||||||| ||||||||| Sbjct: 25705645 cgtagcacttcttcctgatctcgccttcgccgccggtgagcacgccgacgccgcccatct 25705586 Query: 202 tga 204 ||| Sbjct: 25705585 tga 25705583 Score = 61.9 bits (31), Expect = 2e-06 Identities = 76/91 (83%) Strand = Plus / Minus Query: 305 gtcggagcggaagaggcccctccgcttggcgacgtggcggtagtagctggtgtcgaaggt 364 ||||||| ||||||| |||| |||| | || || | |||||||||| || ||||||||| Sbjct: 25705482 gtcggagtggaagagcccccgccgcctcgccaccagccggtagtagccggcgtcgaaggt 25705423 Query: 365 cttgaagctcccggggtccatctccgacagc 395 ||||||||||||||||||||||| |||| Sbjct: 25705422 gaggaagctcccggggtccatctccgccagc 25705392 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Plus Query: 174 ccggtgagcacgccgacgtcgcccatcttgatcatgg 210 |||||||||||||||||| |||||||||| ||||| Sbjct: 5622771 ccggtgagcacgccgacgctccccatcttgaccatgg 5622807
>dbj|AK108713.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-150-B05, full insert sequence Length = 1346 Score = 69.9 bits (35), Expect = 7e-09 Identities = 56/63 (88%) Strand = Plus / Minus Query: 142 cgtagcacttcttcctaatctctccctcagctccggtgagcacgccgacgtcgcccatct 201 |||||||||||||||| ||||| || || | |||||||||||||||||| ||||||||| Sbjct: 1092 cgtagcacttcttcctgatctcgccttcgccgccggtgagcacgccgacgccgcccatct 1033 Query: 202 tga 204 ||| Sbjct: 1032 tga 1030 Score = 61.9 bits (31), Expect = 2e-06 Identities = 76/91 (83%) Strand = Plus / Minus Query: 305 gtcggagcggaagaggcccctccgcttggcgacgtggcggtagtagctggtgtcgaaggt 364 ||||||| ||||||| |||| |||| | || || | |||||||||| || ||||||||| Sbjct: 929 gtcggagtggaagagcccccgccgcctcgccaccagccggtagtagccggcgtcgaaggt 870 Query: 365 cttgaagctcccggggtccatctccgacagc 395 ||||||||||||||||||||||| |||| Sbjct: 869 gaggaagctcccggggtccatctccgccagc 839
>dbj|AK068148.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134G11, full insert sequence Length = 3544 Score = 69.9 bits (35), Expect = 7e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 331 tggcgacgtggcggtagtagctggtgtcgaaggtcttgaagctcccggggtccatctcc 389 |||||| ||| | |||||||||||||||||| ||| |||||||||| |||||||||||| Sbjct: 3155 tggcgatgtgcctgtagtagctggtgtcgaacgtcctgaagctccccgggtccatctcc 3097
>tpe|BN000663.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx134 gene for class III peroxidase 134 precursor, exons 1-2 Length = 1524 Score = 69.9 bits (35), Expect = 7e-09 Identities = 56/63 (88%) Strand = Plus / Minus Query: 142 cgtagcacttcttcctaatctctccctcagctccggtgagcacgccgacgtcgcccatct 201 |||||||||||||||| ||||| || || | |||||||||||||||||| ||||||||| Sbjct: 1513 cgtagcacttcttcctgatctcgccttcgccgccggtgagcacgccgacgccgcccatct 1454 Query: 202 tga 204 ||| Sbjct: 1453 tga 1451 Score = 61.9 bits (31), Expect = 2e-06 Identities = 76/91 (83%) Strand = Plus / Minus Query: 305 gtcggagcggaagaggcccctccgcttggcgacgtggcggtagtagctggtgtcgaaggt 364 ||||||| ||||||| |||| |||| | || || | |||||||||| || ||||||||| Sbjct: 1350 gtcggagtggaagagcccccgccgcctcgccaccagccggtagtagccggcgtcgaaggt 1291 Query: 365 cttgaagctcccggggtccatctccgacagc 395 ||||||||||||||||||||||| |||| Sbjct: 1290 gaggaagctcccggggtccatctccgccagc 1260
>tpe|BN000585.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx56 gene for class III peroxidase 56 precursor, exons 1-4 Length = 1918 Score = 69.9 bits (35), Expect = 7e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 331 tggcgacgtggcggtagtagctggtgtcgaaggtcttgaagctcccggggtccatctcc 389 |||||| ||| | |||||||||||||||||| ||| |||||||||| |||||||||||| Sbjct: 1715 tggcgatgtgcctgtagtagctggtgtcgaacgtcctgaagctccccgggtccatctcc 1657
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 69.9 bits (35), Expect = 7e-09 Identities = 56/63 (88%) Strand = Plus / Minus Query: 142 cgtagcacttcttcctaatctctccctcagctccggtgagcacgccgacgtcgcccatct 201 |||||||||||||||| ||||| || || | |||||||||||||||||| ||||||||| Sbjct: 26024315 cgtagcacttcttcctgatctcgccttcgccgccggtgagcacgccgacgccgcccatct 26024256 Query: 202 tga 204 ||| Sbjct: 26024255 tga 26024253 Score = 61.9 bits (31), Expect = 2e-06 Identities = 76/91 (83%) Strand = Plus / Minus Query: 305 gtcggagcggaagaggcccctccgcttggcgacgtggcggtagtagctggtgtcgaaggt 364 ||||||| ||||||| |||| |||| | || || | |||||||||| || ||||||||| Sbjct: 26024152 gtcggagtggaagagcccccgccgcctcgccaccagccggtagtagccggcgtcgaaggt 26024093 Query: 365 cttgaagctcccggggtccatctccgacagc 395 ||||||||||||||||||||||| |||| Sbjct: 26024092 gaggaagctcccggggtccatctccgccagc 26024062 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Plus Query: 174 ccggtgagcacgccgacgtcgcccatcttgatcatgg 210 |||||||||||||||||| |||||||||| ||||| Sbjct: 5689248 ccggtgagcacgccgacgctccccatcttgaccatgg 5689284
>emb|AL662988.4|OSJN00186 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0089N06, complete sequence Length = 141752 Score = 69.9 bits (35), Expect = 7e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 331 tggcgacgtggcggtagtagctggtgtcgaaggtcttgaagctcccggggtccatctcc 389 |||||| ||| | |||||||||||||||||| ||| |||||||||| |||||||||||| Sbjct: 27244 tggcgatgtgcctgtagtagctggtgtcgaacgtcctgaagctccccgggtccatctcc 27186
>ref|XM_476365.1| Oryza sativa (japonica cultivar-group), mRNA Length = 744 Score = 67.9 bits (34), Expect = 3e-08 Identities = 76/90 (84%) Strand = Plus / Minus Query: 305 gtcggagcggaagaggcccctccgcttggcgacgtggcggtagtagctggtgtcgaaggt 364 ||||||| |||||| ||| | |||||||| || | ||||||||||||| ||||||||| Sbjct: 342 gtcggagtggaagatgccgcggcgcttggccaccagccggtagtagctggcgtcgaaggt 283 Query: 365 cttgaagctcccggggtccatctccgacag 394 |||||| |||||||||||||||||||| Sbjct: 282 gaggaagctgccggggtccatctccgacag 253 Score = 44.1 bits (22), Expect = 0.39 Identities = 40/46 (86%) Strand = Plus / Minus Query: 140 ggcgtagcacttcttcctaatctctccctcagctccggtgagcacg 185 |||||||||||| ||||| ||||| |||| || |||||||||||| Sbjct: 507 ggcgtagcacttgttcctgatctcgccctgcgccccggtgagcacg 462
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 67.9 bits (34), Expect = 3e-08 Identities = 76/90 (84%) Strand = Plus / Minus Query: 305 gtcggagcggaagaggcccctccgcttggcgacgtggcggtagtagctggtgtcgaaggt 364 ||||||| |||||| ||| | |||||||| || | ||||||||||||| ||||||||| Sbjct: 235927 gtcggagtggaagatgccgcggcgcttggccaccagccggtagtagctggcgtcgaaggt 235868 Query: 365 cttgaagctcccggggtccatctccgacag 394 |||||| |||||||||||||||||||| Sbjct: 235867 gaggaagctgccggggtccatctccgacag 235838 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 346 agtagctggtgtcgaaggtcttgaagctcccggggtccatctccg 390 |||||||| ||||||| || |||||||||||||||||||||||| Sbjct: 252646 agtagctgctgtcgaacctcgtgaagctcccggggtccatctccg 252602 Score = 44.1 bits (22), Expect = 0.39 Identities = 40/46 (86%) Strand = Plus / Minus Query: 140 ggcgtagcacttcttcctaatctctccctcagctccggtgagcacg 185 |||||||||||| ||||| ||||| |||| || |||||||||||| Sbjct: 236092 ggcgtagcacttgttcctgatctcgccctgcgccccggtgagcacg 236047 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 305 gtcggagcggaagaggcccctccg 328 ||||||| |||||||||||||||| Sbjct: 20751495 gtcggagtggaagaggcccctccg 20751472 Score = 40.1 bits (20), Expect = 6.0 Identities = 35/40 (87%) Strand = Plus / Minus Query: 172 ctccggtgagcacgccgacgtcgcccatcttgatcatgga 211 |||| ||||||||||||| | |||||||||| | |||||| Sbjct: 252820 ctcccgtgagcacgccgatggcgcccatcttcaccatgga 252781
>dbj|AP005187.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0446F04 Length = 175390 Score = 67.9 bits (34), Expect = 3e-08 Identities = 76/90 (84%) Strand = Plus / Minus Query: 305 gtcggagcggaagaggcccctccgcttggcgacgtggcggtagtagctggtgtcgaaggt 364 ||||||| |||||| ||| | |||||||| || | ||||||||||||| ||||||||| Sbjct: 70791 gtcggagtggaagatgccgcggcgcttggccaccagccggtagtagctggcgtcgaaggt 70732 Query: 365 cttgaagctcccggggtccatctccgacag 394 |||||| |||||||||||||||||||| Sbjct: 70731 gaggaagctgccggggtccatctccgacag 70702 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 346 agtagctggtgtcgaaggtcttgaagctcccggggtccatctccg 390 |||||||| ||||||| || |||||||||||||||||||||||| Sbjct: 87510 agtagctgctgtcgaacctcgtgaagctcccggggtccatctccg 87466 Score = 44.1 bits (22), Expect = 0.39 Identities = 40/46 (86%) Strand = Plus / Minus Query: 140 ggcgtagcacttcttcctaatctctccctcagctccggtgagcacg 185 |||||||||||| ||||| ||||| |||| || |||||||||||| Sbjct: 70956 ggcgtagcacttgttcctgatctcgccctgcgccccggtgagcacg 70911 Score = 40.1 bits (20), Expect = 6.0 Identities = 35/40 (87%) Strand = Plus / Minus Query: 172 ctccggtgagcacgccgacgtcgcccatcttgatcatgga 211 |||| ||||||||||||| | |||||||||| | |||||| Sbjct: 87684 ctcccgtgagcacgccgatggcgcccatcttcaccatgga 87645
>dbj|AK107894.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-134-E12, full insert sequence Length = 744 Score = 67.9 bits (34), Expect = 3e-08 Identities = 76/90 (84%) Strand = Plus / Minus Query: 305 gtcggagcggaagaggcccctccgcttggcgacgtggcggtagtagctggtgtcgaaggt 364 ||||||| |||||| ||| | |||||||| || | ||||||||||||| ||||||||| Sbjct: 342 gtcggagtggaagatgccgcggcgcttggccaccagccggtagtagctggcgtcgaaggt 283 Query: 365 cttgaagctcccggggtccatctccgacag 394 |||||| |||||||||||||||||||| Sbjct: 282 gaggaagctgccggggtccatctccgacag 253 Score = 44.1 bits (22), Expect = 0.39 Identities = 40/46 (86%) Strand = Plus / Minus Query: 140 ggcgtagcacttcttcctaatctctccctcagctccggtgagcacg 185 |||||||||||| ||||| ||||| |||| || |||||||||||| Sbjct: 507 ggcgtagcacttgttcctgatctcgccctgcgccccggtgagcacg 462
>tpe|BN000626.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx97 gene for class III peroxidase 97 precursor, exons 1-2 Length = 1107 Score = 67.9 bits (34), Expect = 3e-08 Identities = 76/90 (84%) Strand = Plus / Minus Query: 305 gtcggagcggaagaggcccctccgcttggcgacgtggcggtagtagctggtgtcgaaggt 364 ||||||| |||||| ||| | |||||||| || | ||||||||||||| ||||||||| Sbjct: 930 gtcggagtggaagatgccgcggcgcttggccaccagccggtagtagctggcgtcgaaggt 871 Query: 365 cttgaagctcccggggtccatctccgacag 394 |||||| |||||||||||||||||||| Sbjct: 870 gaggaagctgccggggtccatctccgacag 841 Score = 44.1 bits (22), Expect = 0.39 Identities = 40/46 (86%) Strand = Plus / Minus Query: 140 ggcgtagcacttcttcctaatctctccctcagctccggtgagcacg 185 |||||||||||| ||||| ||||| |||| || |||||||||||| Sbjct: 1095 ggcgtagcacttgttcctgatctcgccctgcgccccggtgagcacg 1050
>ref|NM_197545.1| Oryza sativa (japonica cultivar-group) putative peroxidase (OSJNBa0040D23.2), mRNA Length = 1204 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 174 ccggtgagcacgccgacgtcgcccatcttgatcatgg 210 |||||||||||||||||| |||||||||||| ||||| Sbjct: 1028 ccggtgagcacgccgacggcgcccatcttgaccatgg 992
>ref|XM_476366.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1050 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 346 agtagctggtgtcgaaggtcttgaagctcccggggtccatctccg 390 |||||||| ||||||| || |||||||||||||||||||||||| Sbjct: 829 agtagctgctgtcgaacctcgtgaagctcccggggtccatctccg 785 Score = 40.1 bits (20), Expect = 6.0 Identities = 35/40 (87%) Strand = Plus / Minus Query: 172 ctccggtgagcacgccgacgtcgcccatcttgatcatgga 211 |||| ||||||||||||| | |||||||||| | |||||| Sbjct: 1003 ctcccgtgagcacgccgatggcgcccatcttcaccatgga 964
>gb|AC092697.6| Oryza sativa chromosome 10 BAC OSJNBb0060I05 genomic sequence, complete sequence Length = 105841 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 174 ccggtgagcacgccgacgtcgcccatcttgatcatgg 210 |||||||||||||||||| |||||||||||| ||||| Sbjct: 98372 ccggtgagcacgccgacggcgcccatcttgaccatgg 98336
>gb|AC074196.14| Oryza sativa chromosome 10 BAC OSJNBa0040D23 genomic sequence, complete sequence Length = 134102 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 174 ccggtgagcacgccgacgtcgcccatcttgatcatgg 210 |||||||||||||||||| |||||||||||| ||||| Sbjct: 23018 ccggtgagcacgccgacggcgcccatcttgaccatgg 22982
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 174 ccggtgagcacgccgacgtcgcccatcttgatcatgg 210 |||||||||||||||||| |||||||||||| ||||| Sbjct: 20382870 ccggtgagcacgccgacggcgcccatcttgaccatgg 20382834
>dbj|AP004673.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0617C02 Length = 135605 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 346 agtagctggtgtcgaaggtcttgaagctcccggggtccatctccg 390 |||||||| ||||||| || |||||||||||||||||||||||| Sbjct: 4645 agtagctgctgtcgaacctcgtgaagctcccggggtccatctccg 4601 Score = 40.1 bits (20), Expect = 6.0 Identities = 35/40 (87%) Strand = Plus / Minus Query: 172 ctccggtgagcacgccgacgtcgcccatcttgatcatgga 211 |||| ||||||||||||| | |||||||||| | |||||| Sbjct: 4819 ctcccgtgagcacgccgatggcgcccatcttcaccatgga 4780
>dbj|AK105708.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-E05, full insert sequence Length = 1422 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 174 ccggtgagcacgccgacgtcgcccatcttgatcatgg 210 |||||||||||||||||| |||||||||||| ||||| Sbjct: 1137 ccggtgagcacgccgacggcgcccatcttgaccatgg 1101
>tpe|BN000657.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx128 gene for class III peroxidase 128 precursor, exons 1-3 Length = 1794 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 174 ccggtgagcacgccgacgtcgcccatcttgatcatgg 210 |||||||||||||||||| |||||||||||| ||||| Sbjct: 1754 ccggtgagcacgccgacggcgcccatcttgaccatgg 1718
>tpe|BN000623.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx94 gene for class III peroxidase 94 precursor, exon 1 Length = 1050 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 346 agtagctggtgtcgaaggtcttgaagctcccggggtccatctccg 390 |||||||| ||||||| || |||||||||||||||||||||||| Sbjct: 829 agtagctgctgtcgaacctcgtgaagctcccggggtccatctccg 785 Score = 40.1 bits (20), Expect = 6.0 Identities = 35/40 (87%) Strand = Plus / Minus Query: 172 ctccggtgagcacgccgacgtcgcccatcttgatcatgga 211 |||| ||||||||||||| | |||||||||| | |||||| Sbjct: 1003 ctcccgtgagcacgccgatggcgcccatcttcaccatgga 964
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 174 ccggtgagcacgccgacgtcgcccatcttgatcatgg 210 |||||||||||||||||| |||||||||||| ||||| Sbjct: 20394142 ccggtgagcacgccgacggcgcccatcttgaccatgg 20394106
>gb|AC113332.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1057_B02, complete sequence Length = 99795 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 356 gtcgaaggtcttgaagctcccggggtccatctcc 389 |||||| |||||||||||||| |||||||||||| Sbjct: 41913 gtcgaacgtcttgaagctccccgggtccatctcc 41880 Score = 46.1 bits (23), Expect = 0.097 Identities = 58/67 (86%), Gaps = 2/67 (2%) Strand = Plus / Minus Query: 146 gcacttcttcctaatctctccctcagct-ccggtgagcacgccgacgtcgcccatcttga 204 |||||||||||| ||||| |||| ||| ||||||||||| ||||| |||||||||||| Sbjct: 42123 gcacttcttcctgatctcgccctg-gctgccggtgagcacttcgacgccgcccatcttga 42065 Query: 205 tcatgga 211 |||||| Sbjct: 42064 ccatgga 42058
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 356 gtcgaaggtcttgaagctcccggggtccatctcc 389 |||||| |||||||||||||| |||||||||||| Sbjct: 24439240 gtcgaacgtcttgaagctccccgggtccatctcc 24439207 Score = 46.1 bits (23), Expect = 0.097 Identities = 58/67 (86%), Gaps = 2/67 (2%) Strand = Plus / Minus Query: 146 gcacttcttcctaatctctccctcagct-ccggtgagcacgccgacgtcgcccatcttga 204 |||||||||||| ||||| |||| ||| ||||||||||| ||||| |||||||||||| Sbjct: 24439450 gcacttcttcctgatctcgccctg-gctgccggtgagcacttcgacgccgcccatcttga 24439392 Query: 205 tcatgga 211 |||||| Sbjct: 24439391 ccatgga 24439385 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Minus Query: 174 ccggtgagcacgccgacgtcgcccatcttgatcatgg 210 |||||||||||| ||| || ||||||||||| ||||| Sbjct: 2002576 ccggtgagcacgtcgaggttgcccatcttgaccatgg 2002540 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 161 ctctccctcagctccggtgag 181 ||||||||||||||||||||| Sbjct: 1071734 ctctccctcagctccggtgag 1071714
>dbj|D14997.1|RICPEROX Oryza sativa (japonica cultivar-group) mRNA for peroxidase, complete cds Length = 1325 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 356 gtcgaaggtcttgaagctcccggggtccatctcc 389 |||||| |||||||||||||| |||||||||||| Sbjct: 821 gtcgaacgtcttgaagctccccgggtccatctcc 788 Score = 46.1 bits (23), Expect = 0.097 Identities = 58/67 (86%), Gaps = 2/67 (2%) Strand = Plus / Minus Query: 146 gcacttcttcctaatctctccctcagct-ccggtgagcacgccgacgtcgcccatcttga 204 |||||||||||| ||||| |||| ||| ||||||||||| ||||| |||||||||||| Sbjct: 1031 gcacttcttcctgatctcgccctg-gctgccggtgagcacttcgacgccgcccatcttga 973 Query: 205 tcatgga 211 |||||| Sbjct: 972 ccatgga 966
>dbj|AK104950.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-110-A02, full insert sequence Length = 1347 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 356 gtcgaaggtcttgaagctcccggggtccatctcc 389 |||||| |||||||||||||| |||||||||||| Sbjct: 850 gtcgaacgtcttgaagctccccgggtccatctcc 817 Score = 46.1 bits (23), Expect = 0.097 Identities = 58/67 (86%), Gaps = 2/67 (2%) Strand = Plus / Minus Query: 146 gcacttcttcctaatctctccctcagct-ccggtgagcacgccgacgtcgcccatcttga 204 |||||||||||| ||||| |||| ||| ||||||||||| ||||| |||||||||||| Sbjct: 1060 gcacttcttcctgatctcgccctg-gctgccggtgagcacttcgacgccgcccatcttga 1002 Query: 205 tcatgga 211 |||||| Sbjct: 1001 ccatgga 995
>dbj|AK066855.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013082J20, full insert sequence Length = 1348 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 356 gtcgaaggtcttgaagctcccggggtccatctcc 389 |||||| |||||||||||||| |||||||||||| Sbjct: 851 gtcgaacgtcttgaagctccccgggtccatctcc 818 Score = 46.1 bits (23), Expect = 0.097 Identities = 58/67 (86%), Gaps = 2/67 (2%) Strand = Plus / Minus Query: 146 gcacttcttcctaatctctccctcagct-ccggtgagcacgccgacgtcgcccatcttga 204 |||||||||||| ||||| |||| ||| ||||||||||| ||||| |||||||||||| Sbjct: 1061 gcacttcttcctgatctcgccctg-gctgccggtgagcacttcgacgccgcccatcttga 1003 Query: 205 tcatgga 211 |||||| Sbjct: 1002 ccatgga 996
>tpe|BN000603.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx74 gene for class III peroxidase 74 precursor, exons 1-4 Length = 1311 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 356 gtcgaaggtcttgaagctcccggggtccatctcc 389 |||||| |||||||||||||| |||||||||||| Sbjct: 1086 gtcgaacgtcttgaagctccccgggtccatctcc 1053 Score = 46.1 bits (23), Expect = 0.097 Identities = 58/67 (86%), Gaps = 2/67 (2%) Strand = Plus / Minus Query: 146 gcacttcttcctaatctctccctcagct-ccggtgagcacgccgacgtcgcccatcttga 204 |||||||||||| ||||| |||| ||| ||||||||||| ||||| |||||||||||| Sbjct: 1296 gcacttcttcctgatctcgccctg-gctgccggtgagcacttcgacgccgcccatcttga 1238 Query: 205 tcatgga 211 |||||| Sbjct: 1237 ccatgga 1231
>ref|NM_183816.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1062 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Minus Query: 174 ccggtgagcacgccgacgtcgcccatcttgatcatgg 210 |||||||||||| ||| || ||||||||||||||||| Sbjct: 935 ccggtgagcacgtcgatgttgcccatcttgatcatgg 899
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Minus Query: 174 ccggtgagcacgccgacgtcgcccatcttgatcatgg 210 |||||||||||| ||| || ||||||||||||||||| Sbjct: 12552429 ccggtgagcacgtcgatgttgcccatcttgatcatgg 12552393
>dbj|AP002971.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0537A05 Length = 152396 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Minus Query: 174 ccggtgagcacgccgacgtcgcccatcttgatcatgg 210 |||||||||||| ||| || ||||||||||||||||| Sbjct: 64039 ccggtgagcacgtcgatgttgcccatcttgatcatgg 64003
>dbj|AP004358.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1135C02 Length = 152306 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Minus Query: 174 ccggtgagcacgccgacgtcgcccatcttgatcatgg 210 |||||||||||| ||| || ||||||||||||||||| Sbjct: 138044 ccggtgagcacgtcgatgttgcccatcttgatcatgg 138008
>dbj|AK070715.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023058L02, full insert sequence Length = 1492 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Minus Query: 174 ccggtgagcacgccgacgtcgcccatcttgatcatgg 210 |||||||||||| ||| || ||||||||||||||||| Sbjct: 1010 ccggtgagcacgtcgatgttgcccatcttgatcatgg 974
>dbj|AK059977.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-B01, full insert sequence Length = 1015 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Minus Query: 174 ccggtgagcacgccgacgtcgcccatcttgatcatgg 210 |||||||||||| ||| || ||||||||||||||||| Sbjct: 699 ccggtgagcacgtcgatgttgcccatcttgatcatgg 663
>gb|AY108615.1| Zea mays PCO132912 mRNA sequence Length = 1231 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Minus Query: 174 ccggtgagcacgccgacgtcgcccatcttgatcatgg 210 |||||||||||||||||| ||||||||||| ||||| Sbjct: 929 ccggtgagcacgccgacggagcccatcttgaccatgg 893
>tpe|BN000544.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx15 gene for class III peroxidase 15 precursor, exons 1-3 Length = 5322 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Minus Query: 174 ccggtgagcacgccgacgtcgcccatcttgatcatgg 210 |||||||||||| ||| || ||||||||||||||||| Sbjct: 5195 ccggtgagcacgtcgatgttgcccatcttgatcatgg 5159
>ref|XM_450517.1| Oryza sativa (japonica cultivar-group), mRNA Length = 987 Score = 46.1 bits (23), Expect = 0.097 Identities = 26/27 (96%) Strand = Plus / Minus Query: 159 atctctccctcagctccggtgagcacg 185 |||||||||| |||||||||||||||| Sbjct: 959 atctctccctgagctccggtgagcacg 933
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 46.1 bits (23), Expect = 0.097 Identities = 26/27 (96%) Strand = Plus / Minus Query: 159 atctctccctcagctccggtgagcacg 185 |||||||||| |||||||||||||||| Sbjct: 9434245 atctctccctgagctccggtgagcacg 9434219
>dbj|AP005879.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0024J13 Length = 127614 Score = 46.1 bits (23), Expect = 0.097 Identities = 26/27 (96%) Strand = Plus / Minus Query: 159 atctctccctcagctccggtgagcacg 185 |||||||||| |||||||||||||||| Sbjct: 117659 atctctccctgagctccggtgagcacg 117633
>gb|AY106450.1| Zea mays PCO105015 mRNA sequence Length = 1470 Score = 46.1 bits (23), Expect = 0.097 Identities = 71/87 (81%) Strand = Plus / Minus Query: 303 gcgtcggagcggaagaggcccctccgcttggcgacgtggcggtagtagctggtgtcgaag 362 |||||||| |||| ||||||| ||||||| ||| |||||||||||| ||||||| Sbjct: 922 gcgtcggactggaacaggccccgccgcttgagcacgccgcggtagtagctcaggtcgaag 863 Query: 363 gtcttgaagctcccggggtccatctcc 389 || |||||| ||||||||||||||| Sbjct: 862 gtgcggaagctgccggggtccatctcc 836
>tpe|BN000650.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx121 gene for class III peroxidase 121 precursor, exons 1-2 Length = 1070 Score = 46.1 bits (23), Expect = 0.097 Identities = 26/27 (96%) Strand = Plus / Minus Query: 159 atctctccctcagctccggtgagcacg 185 |||||||||| |||||||||||||||| Sbjct: 1042 atctctccctgagctccggtgagcacg 1016
>gb|AC154605.2| Mus musculus BAC clone RP23-348G3 from chromosome 16, complete sequence Length = 191050 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 104 attacagcaactaagaatcaac 125 |||||||||||||||||||||| Sbjct: 190140 attacagcaactaagaatcaac 190161
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Plus Query: 174 ccggtgagcacgccgacgtcgcccatcttg 203 |||||||||||||||||| |||||||||| Sbjct: 20926228 ccggtgagcacgccgacgcggcccatcttg 20926257
>dbj|AK109551.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-124-A03, full insert sequence Length = 1325 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Minus Query: 174 ccggtgagcacgccgacgtcgcccatcttg 203 |||||||||||||||||| |||||||||| Sbjct: 1082 ccggtgagcacgccgacgcggcccatcttg 1053
>tpe|BN000667.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx138 gene for class III peroxidase 138 precursor, exons 1-4 Length = 9140 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Minus Query: 174 ccggtgagcacgccgacgtcgcccatcttg 203 |||||||||||||||||| |||||||||| Sbjct: 9091 ccggtgagcacgccgacgcggcccatcttg 9062
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Plus Query: 174 ccggtgagcacgccgacgtcgcccatcttg 203 |||||||||||||||||| |||||||||| Sbjct: 20852442 ccggtgagcacgccgacgcggcccatcttg 20852471
>emb|AL713943.3|CNS07YPC Oryza sativa chromosome 12, . BAC OSJNBa0030G16 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 182172 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Plus Query: 174 ccggtgagcacgccgacgtcgcccatcttg 203 |||||||||||||||||| |||||||||| Sbjct: 11718 ccggtgagcacgccgacgcggcccatcttg 11747
>emb|AL731880.3|CNS08C8J Oryza sativa chromosome 12, . BAC OSJNBa0035E02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 107819 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Minus Query: 174 ccggtgagcacgccgacgtcgcccatcttg 203 |||||||||||||||||| |||||||||| Sbjct: 32767 ccggtgagcacgccgacgcggcccatcttg 32738
>emb|CT009627.9| Mouse DNA sequence from clone RP23-71E4 on chromosome 16, complete sequence Length = 257276 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 104 attacagcaactaagaatcaac 125 |||||||||||||||||||||| Sbjct: 247633 attacagcaactaagaatcaac 247612
>ref|NM_187572.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 936 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Minus Query: 174 ccggtgagcacgccgacgtcgcccatcttgatcatgg 210 |||||||||||||||| | ||||||||||| ||||| Sbjct: 893 ccggtgagcacgccgatggagcccatcttgaccatgg 857
>gb|AF172282.1| Oryza sativa adh1-adh2 region Length = 339485 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Minus Query: 174 ccggtgagcacgccgacgtcgcccatcttgatcatgg 210 |||||||||||||||||| |||||||||| ||||| Sbjct: 53194 ccggtgagcacgccgacgctccccatcttgaccatgg 53158
>gb|AC093088.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1001_G01, complete sequence Length = 122768 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 161 ctctccctcagctccggtgag 181 ||||||||||||||||||||| Sbjct: 27345 ctctccctcagctccggtgag 27325
>gb|AC087552.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0519E07, complete sequence Length = 151399 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Minus Query: 174 ccggtgagcacgccgacgtcgcccatcttgatcatgg 210 |||||||||||| ||| || ||||||||||| ||||| Sbjct: 95453 ccggtgagcacgtcgaggttgcccatcttgaccatgg 95417
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Plus Query: 174 ccggtgagcacgccgacgtcgcccatcttgatcatgg 210 |||||||||||||||| | ||||||||||| ||||| Sbjct: 1152325 ccggtgagcacgccgatggagcccatcttgaccatgg 1152361
>gb|AC123522.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0051B13, complete sequence Length = 178000 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Plus Query: 174 ccggtgagcacgccgacgtcgcccatcttgatcatgg 210 |||||||||||||||||| |||||||||| ||||| Sbjct: 167889 ccggtgagcacgccgacgctccccatcttgaccatgg 167925
>gb|AC123521.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0037P04, complete sequence Length = 139693 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Plus Query: 174 ccggtgagcacgccgacgtcgcccatcttgatcatgg 210 |||||||||||||||||| |||||||||| ||||| Sbjct: 95331 ccggtgagcacgccgacgctccccatcttgaccatgg 95367
>gb|AC105363.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1705B08, complete sequence Length = 100986 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Plus Query: 174 ccggtgagcacgccgacgtcgcccatcttgatcatgg 210 |||||||||||||||| | ||||||||||| ||||| Sbjct: 56029 ccggtgagcacgccgatggagcccatcttgaccatgg 56065
>gb|AC091154.3| Homo sapiens chromosome 17, clone RP11-750B16, complete sequence Length = 175783 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 16 tctatagcagtgagaataatacatc 40 ||||||||||||||||||| ||||| Sbjct: 56685 tctatagcagtgagaataaaacatc 56661
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Plus Query: 174 ccggtgagcacgccgacgtcgcccatcttgatcatgg 210 |||||||||||||||| | ||||||||||| ||||| Sbjct: 1152323 ccggtgagcacgccgatggagcccatcttgaccatgg 1152359
>dbj|AK103660.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033135H09, full insert sequence Length = 1506 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Minus Query: 174 ccggtgagcacgccgacgtcgcccatcttgatcatgg 210 |||||||||||||||| | ||||||||||| ||||| Sbjct: 1115 ccggtgagcacgccgatggagcccatcttgaccatgg 1079
>dbj|AK099187.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023107P11, full insert sequence Length = 1271 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Minus Query: 174 ccggtgagcacgccgacgtcgcccatcttgatcatgg 210 |||||||||||| || || ||||||||||||||||| Sbjct: 1005 ccggtgagcacgttgatgttgcccatcttgatcatgg 969
>dbj|AK073847.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069F06, full insert sequence Length = 1491 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Minus Query: 174 ccggtgagcacgccgacgtcgcccatcttgatcatgg 210 |||||||||||||||| | ||||||||||| ||||| Sbjct: 1115 ccggtgagcacgccgatggagcccatcttgaccatgg 1079
>dbj|AK060028.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-F06, full insert sequence Length = 1147 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Minus Query: 174 ccggtgagcacgccgacgtcgcccatcttgatcatgg 210 |||||||||||||||| | ||||||||||| ||||| Sbjct: 819 ccggtgagcacgccgatggagcccatcttgaccatgg 783
>tpe|BN000662.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx133 gene for class III peroxidase 133 precursor, exons 1-4 Length = 1438 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Minus Query: 174 ccggtgagcacgccgacgtcgcccatcttgatcatgg 210 |||||||||||||||||| |||||||||| ||||| Sbjct: 1395 ccggtgagcacgccgacgctccccatcttgaccatgg 1359
>tpe|BN000661.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx132 gene for class III peroxidase 132 precursor, exons 1-4 Length = 1438 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Minus Query: 174 ccggtgagcacgccgacgtcgcccatcttgatcatgg 210 |||||||||||||||||| |||||||||| ||||| Sbjct: 1395 ccggtgagcacgccgacgctccccatcttgaccatgg 1359
>tpe|BN000598.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx69 gene for class III peroxidase 69 precursor, exons 1-2 Length = 1108 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Minus Query: 174 ccggtgagcacgccgacgtcgcccatcttgatcatgg 210 |||||||||||| ||| || ||||||||||| ||||| Sbjct: 1065 ccggtgagcacgtcgaggttgcccatcttgaccatgg 1029
>tpe|BN000562.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx33 gene for class III peroxidase 33 precursor, exons 1-3 Length = 3361 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Minus Query: 174 ccggtgagcacgccgacgtcgcccatcttgatcatgg 210 |||||||||||||||| | ||||||||||| ||||| Sbjct: 3318 ccggtgagcacgccgatggagcccatcttgaccatgg 3282
>dbj|AP001111.1| Oryza sativa genomic DNA, chromosome 5, clone:P0699E04 Length = 175439 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 161 ctctccctcagctccggtgag 181 ||||||||||||||||||||| Sbjct: 162131 ctctccctcagctccggtgag 162111
>gb|AC135358.3| Mus musculus BAC clone RP24-107J13 from 9, complete sequence Length = 182075 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 62 gatggcgcatgcacacacacc 82 ||||||||||||||||||||| Sbjct: 67832 gatggcgcatgcacacacacc 67852
>emb|AL683805.8| Mouse DNA sequence from clone RP23-183M16 on chromosome 2, complete sequence Length = 216508 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 32 taatacatcgcactacagtgcataa 56 |||||||| |||||||||||||||| Sbjct: 134891 taatacatagcactacagtgcataa 134915
>emb|AL731811.24| Mouse DNA sequence from clone RP23-60A1 on chromosome X, complete sequence Length = 167102 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 77 cacaccatctcgtgcattcacaact 101 |||||||||||||||| |||||||| Sbjct: 122159 cacaccatctcgtgcaatcacaact 122135
>gb|AC165260.2| Mus musculus BAC clone RP23-123E17 from chromosome 13, complete sequence Length = 209914 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 cgcatgcacacacaccatct 86 |||||||||||||||||||| Sbjct: 1997 cgcatgcacacacaccatct 1978
>ref|XM_478531.1| Oryza sativa (japonica cultivar-group), mRNA Length = 971 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 305 gtcggagcggaagaggcccctccg 328 ||||||| |||||||||||||||| Sbjct: 685 gtcggagtggaagaggcccctccg 662
>ref|XM_478530.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1225 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 305 gtcggagcggaagaggcccctccg 328 ||||||| |||||||||||||||| Sbjct: 939 gtcggagtggaagaggcccctccg 916
>emb|Z93096.1|HS390B3 Human DNA sequence from clone CTA-390B3 on chromosome 22q12-13, complete sequence Length = 92510 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 59 tcagatggcgcatgcacacacacc 82 ||||||||||| |||||||||||| Sbjct: 65075 tcagatggcgcgtgcacacacacc 65098
>emb|AL354896.16| Human DNA sequence from clone RP11-512M17 on chromosome 13, complete sequence Length = 209743 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 agcacttcttcctaatctct 164 |||||||||||||||||||| Sbjct: 208787 agcacttcttcctaatctct 208768
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 179 gagcacgccgacgtcgcccatctt 202 ||||||||||| |||||||||||| Sbjct: 1587252 gagcacgccgaggtcgcccatctt 1587275 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 179 gagcacgccgacgtcgcccatctt 202 ||||||||||| |||||||||||| Sbjct: 160869 gagcacgccgaggtcgcccatctt 160846
>emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete genome; segment 23/29 Length = 295150 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 cgtcgtcgaacttgccggtg 254 |||||||||||||||||||| Sbjct: 220561 cgtcgtcgaacttgccggtg 220542
>gb|AC154755.2| Mus musculus BAC clone RP24-406B22 from chromosome 13, complete sequence Length = 180363 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 cgcatgcacacacaccatct 86 |||||||||||||||||||| Sbjct: 159635 cgcatgcacacacaccatct 159616
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 gaacttgccggtggcgatgc 261 |||||||||||||||||||| Sbjct: 178045 gaacttgccggtggcgatgc 178026
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 agcacgccgacgtcgcccat 199 |||||||||||||||||||| Sbjct: 1783917 agcacgccgacgtcgcccat 1783936 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 gaacttgccggtggcgatgc 261 |||||||||||||||||||| Sbjct: 287609 gaacttgccggtggcgatgc 287590
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 gccggtggcgatgcgctgga 267 |||||||||||||||||||| Sbjct: 290635 gccggtggcgatgcgctgga 290616
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 cgtcgaacttgccggtggcg 257 |||||||||||||||||||| Sbjct: 2499067 cgtcgaacttgccggtggcg 2499048
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 gtgagcacgccgacgtcgcc 196 |||||||||||||||||||| Sbjct: 1373013 gtgagcacgccgacgtcgcc 1372994
>dbj|AP004674.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0681F05 Length = 144741 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 305 gtcggagcggaagaggcccctccg 328 ||||||| |||||||||||||||| Sbjct: 104245 gtcggagtggaagaggcccctccg 104222
>emb|BX072582.6| Zebrafish DNA sequence from clone DKEY-222O19 in linkage group 11, complete sequence Length = 194918 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 tcacaacttaattacagcaa 113 |||||||||||||||||||| Sbjct: 94090 tcacaacttaattacagcaa 94071
>dbj|AK103641.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033134M02, full insert sequence Length = 1224 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 305 gtcggagcggaagaggcccctccg 328 ||||||| |||||||||||||||| Sbjct: 938 gtcggagtggaagaggcccctccg 915
>dbj|AK071111.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078B01, full insert sequence Length = 971 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 305 gtcggagcggaagaggcccctccg 328 ||||||| |||||||||||||||| Sbjct: 685 gtcggagtggaagaggcccctccg 662
>tpe|BN000633.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx104 gene for class III peroxidase 104 precursor, exons 1-4 Length = 1853 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 305 gtcggagcggaagaggcccctccg 328 ||||||| |||||||||||||||| Sbjct: 1682 gtcggagtggaagaggcccctccg 1659
>emb|AL772149.4| Mouse DNA sequence from clone RP23-108H7 on chromosome 2, complete sequence Length = 196676 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 acaacttaattacagcaact 115 |||||||||||||||||||| Sbjct: 164911 acaacttaattacagcaact 164930 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,119,782 Number of Sequences: 3902068 Number of extensions: 3119782 Number of successful extensions: 92714 Number of sequences better than 10.0: 100 Number of HSP's better than 10.0 without gapping: 104 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 91557 Number of HSP's gapped (non-prelim): 1152 length of query: 447 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 425 effective length of database: 17,147,199,772 effective search space: 7287559903100 effective search space used: 7287559903100 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
