ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart35g09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_189772.1| Oryza sativa (japonica cultivar-group), predic... 228 1e-56
2dbj|AK070047.1| Oryza sativa (japonica cultivar-group) cDNA clon... 228 1e-56
3dbj|AK067525.1| Oryza sativa (japonica cultivar-group) cDNA clon... 228 1e-56
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 157 4e-35
5dbj|AP003683.3| Oryza sativa (japonica cultivar-group) genomic D... 157 4e-35
6gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 50 0.007
7emb|CR555306.1| Azoarcus sp. EbN1 complete genome 46 0.11
8emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 42 1.7
9ref|XM_470606.1| Oryza sativa (japonica cultivar-group), predic... 40 6.6
10gb|AC163338.5| Mus musculus BAC clone RP24-574A13 from chromosom... 40 6.6
11gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome 40 6.6
12gb|AC104645.8| Homo sapiens chromosome 3 clone CTD-2011M13, comp... 40 6.6
13gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.6
14ref|XM_755998.1| Ustilago maydis 521 hypothetical protein (UM049... 40 6.6
15gb|AC164426.5| Mus musculus BAC clone RP24-320I19 from chromosom... 40 6.6
16emb|AL157788.16| Human DNA sequence from clone RP11-498J9 on chr... 40 6.6
17gb|AC011558.6| Homo sapiens chromosome 19 clone LLNLR-291F12, co... 40 6.6
18dbj|AK052044.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN ... 40 6.6
19dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
20gb|AC134235.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.6
21gb|AC105927.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.6
22gb|AC135157.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.6
23gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 40 6.6
24gb|AC004528.1|AC004528 Homo sapiens chromosome 19, cosmid R32184... 40 6.6
25emb|AL669913.15| Mouse DNA sequence from clone RP23-479C2 on chr... 40 6.6 
>ref|NM_189772.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3348

 Score =  228 bits (115), Expect = 1e-56
 Identities = 226/263 (85%)
 Strand = Plus / Minus

                                                                        
Query: 226  gggtagctgggagatgtagatgtcgtggcacgacgacgacggcagcaggggccgcagccg 285
            ||||||||| |||  ||||||||| ||||||||||||||||||||||  || | ||||| 
Sbjct: 3342 gggtagctgagagtggtagatgtcatggcacgacgacgacggcagcaacgggcacagcct 3283

                                                                        
Query: 286  cagcgagaacctgtagctcgccggcggcagcaggtactcctcatgcacgcacggcgtcca 345
            || ||||||   ||| |||||||||||||||| ||||| ||| ||||||||||||| |||
Sbjct: 3282 caccgagaaggcgtatctcgccggcggcagcaagtactgctcgtgcacgcacggcgacca 3223

                                                                        
Query: 346  gctgtcgtccccgcccacccccatgtgcctatgatcaagatgcacctcgatgtcatctcc 405
            |||||||||||| |||| |||||||||| | ||||||||||||||||||||||| |||||
Sbjct: 3222 gctgtcgtcccctcccagccccatgtgcttgtgatcaagatgcacctcgatgtcgtctcc 3163

                                                                        
Query: 406  cttggtcagcttgtgctgatgggtcgcccggtcgagctccacggagctgtaatagctggc 465
            ||||   |||||||| | ||| ||||| |||||||||||| ||| ||  || ||||||||
Sbjct: 3162 cttgacgagcttgtggttatgcgtcgcgcggtcgagctccgcggcgccatagtagctggc 3103

                                   
Query: 466  gctcgcctgcatcggcggggact 488
            |||| ||||||||||||| ||||
Sbjct: 3102 gctcacctgcatcggcggcgact 3080
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>dbj|AK070047.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038J20, full
            insert sequence
          Length = 3913

 Score =  228 bits (115), Expect = 1e-56
 Identities = 226/263 (85%)
 Strand = Plus / Minus

                                                                        
Query: 226  gggtagctgggagatgtagatgtcgtggcacgacgacgacggcagcaggggccgcagccg 285
            ||||||||| |||  ||||||||| ||||||||||||||||||||||  || | ||||| 
Sbjct: 3516 gggtagctgagagtggtagatgtcatggcacgacgacgacggcagcaacgggcacagcct 3457

                                                                        
Query: 286  cagcgagaacctgtagctcgccggcggcagcaggtactcctcatgcacgcacggcgtcca 345
            || ||||||   ||| |||||||||||||||| ||||| ||| ||||||||||||| |||
Sbjct: 3456 caccgagaaggcgtatctcgccggcggcagcaagtactgctcgtgcacgcacggcgacca 3397

                                                                        
Query: 346  gctgtcgtccccgcccacccccatgtgcctatgatcaagatgcacctcgatgtcatctcc 405
            |||||||||||| |||| |||||||||| | ||||||||||||||||||||||| |||||
Sbjct: 3396 gctgtcgtcccctcccagccccatgtgcttgtgatcaagatgcacctcgatgtcgtctcc 3337

                                                                        
Query: 406  cttggtcagcttgtgctgatgggtcgcccggtcgagctccacggagctgtaatagctggc 465
            ||||   |||||||| | ||| ||||| |||||||||||| ||| ||  || ||||||||
Sbjct: 3336 cttgacgagcttgtggttatgcgtcgcgcggtcgagctccgcggcgccatagtagctggc 3277

                                   
Query: 466  gctcgcctgcatcggcggggact 488
            |||| ||||||||||||| ||||
Sbjct: 3276 gctcacctgcatcggcggcgact 3254
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>dbj|AK067525.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108P17, full
            insert sequence
          Length = 3268

 Score =  228 bits (115), Expect = 1e-56
 Identities = 226/263 (85%)
 Strand = Plus / Minus

                                                                        
Query: 226  gggtagctgggagatgtagatgtcgtggcacgacgacgacggcagcaggggccgcagccg 285
            ||||||||| |||  ||||||||| ||||||||||||||||||||||  || | ||||| 
Sbjct: 3079 gggtagctgagagtggtagatgtcatggcacgacgacgacggcagcaacgggcacagcct 3020

                                                                        
Query: 286  cagcgagaacctgtagctcgccggcggcagcaggtactcctcatgcacgcacggcgtcca 345
            || ||||||   ||| |||||||||||||||| ||||| ||| ||||||||||||| |||
Sbjct: 3019 caccgagaaggcgtatctcgccggcggcagcaagtactgctcgtgcacgcacggcgacca 2960

                                                                        
Query: 346  gctgtcgtccccgcccacccccatgtgcctatgatcaagatgcacctcgatgtcatctcc 405
            |||||||||||| |||| |||||||||| | ||||||||||||||||||||||| |||||
Sbjct: 2959 gctgtcgtcccctcccagccccatgtgcttgtgatcaagatgcacctcgatgtcgtctcc 2900

                                                                        
Query: 406  cttggtcagcttgtgctgatgggtcgcccggtcgagctccacggagctgtaatagctggc 465
            ||||   |||||||| | ||| ||||| |||||||||||| ||| ||  || ||||||||
Sbjct: 2899 cttgacgagcttgtggttatgcgtcgcgcggtcgagctccgcggcgccatagtagctggc 2840

                                   
Query: 466  gctcgcctgcatcggcggggact 488
            |||| ||||||||||||| ||||
Sbjct: 2839 gctcacctgcatcggcggcgact 2817
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  157 bits (79), Expect = 4e-35
 Identities = 145/167 (86%)
 Strand = Plus / Minus

                                                                            
Query: 226      gggtagctgggagatgtagatgtcgtggcacgacgacgacggcagcaggggccgcagccg 285
                ||||||||| |||  ||||||||| ||||||||||||||||||||||  || | ||||| 
Sbjct: 41954747 gggtagctgagagtggtagatgtcatggcacgacgacgacggcagcaacgggcacagcct 41954688

                                                                            
Query: 286      cagcgagaacctgtagctcgccggcggcagcaggtactcctcatgcacgcacggcgtcca 345
                || ||||||   ||| |||||||||||||||| ||||| ||| ||||||||||||| |||
Sbjct: 41954687 caccgagaaggcgtatctcgccggcggcagcaagtactgctcgtgcacgcacggcgacca 41954628

                                                               
Query: 346      gctgtcgtccccgcccacccccatgtgcctatgatcaagatgcacct 392
                |||||||||||| |||| |||||||||| | ||||||||||||||||
Sbjct: 41954627 gctgtcgtcccctcccagccccatgtgcttgtgatcaagatgcacct 41954581



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 86/101 (85%)
 Strand = Plus / Minus

                                                                            
Query: 388      cacctcgatgtcatctcccttggtcagcttgtgctgatgggtcgcccggtcgagctccac 447
                |||||||||||| |||||||||   |||||||| | ||| ||||| |||||||||||| |
Sbjct: 41954437 cacctcgatgtcgtctcccttgacgagcttgtggttatgcgtcgcgcggtcgagctccgc 41954378

                                                         
Query: 448      ggagctgtaatagctggcgctcgcctgcatcggcggggact 488
                || ||  || |||||||||||| ||||||||||||| ||||
Sbjct: 41954377 ggcgccatagtagctggcgctcacctgcatcggcggcgact 41954337
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>dbj|AP003683.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0431G06
          Length = 140466

 Score =  157 bits (79), Expect = 4e-35
 Identities = 145/167 (86%)
 Strand = Plus / Minus

                                                                         
Query: 226   gggtagctgggagatgtagatgtcgtggcacgacgacgacggcagcaggggccgcagccg 285
             ||||||||| |||  ||||||||| ||||||||||||||||||||||  || | ||||| 
Sbjct: 56824 gggtagctgagagtggtagatgtcatggcacgacgacgacggcagcaacgggcacagcct 56765

                                                                         
Query: 286   cagcgagaacctgtagctcgccggcggcagcaggtactcctcatgcacgcacggcgtcca 345
             || ||||||   ||| |||||||||||||||| ||||| ||| ||||||||||||| |||
Sbjct: 56764 caccgagaaggcgtatctcgccggcggcagcaagtactgctcgtgcacgcacggcgacca 56705

                                                            
Query: 346   gctgtcgtccccgcccacccccatgtgcctatgatcaagatgcacct 392
             |||||||||||| |||| |||||||||| | ||||||||||||||||
Sbjct: 56704 gctgtcgtcccctcccagccccatgtgcttgtgatcaagatgcacct 56658



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 86/101 (85%)
 Strand = Plus / Minus

                                                                         
Query: 388   cacctcgatgtcatctcccttggtcagcttgtgctgatgggtcgcccggtcgagctccac 447
             |||||||||||| |||||||||   |||||||| | ||| ||||| |||||||||||| |
Sbjct: 56514 cacctcgatgtcgtctcccttgacgagcttgtggttatgcgtcgcgcggtcgagctccgc 56455

                                                      
Query: 448   ggagctgtaatagctggcgctcgcctgcatcggcggggact 488
             || ||  || |||||||||||| ||||||||||||| ||||
Sbjct: 56454 ggcgccatagtagctggcgctcacctgcatcggcggcgact 56414
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>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                       
Query: 265    cggcagcaggggccgcagccgcagc 289
              |||||||||||||||||||||||||
Sbjct: 575874 cggcagcaggggccgcagccgcagc 575898
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 254     cacgacgacgacggcagcagggg 276
               |||||||||||||||||||||||
Sbjct: 4237221 cacgacgacgacggcagcagggg 4237199
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 464    gcgctcgcctgcatcggcggggact 488
              ||||||||||||||||||| |||||
Sbjct: 817328 gcgctcgcctgcatcggcgcggact 817352
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>ref|XM_470606.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1080

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 390 cctcgatgtcatctcccttg 409
           ||||||||||||||||||||
Sbjct: 344 cctcgatgtcatctcccttg 363
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>gb|AC163338.5| Mus musculus BAC clone RP24-574A13 from chromosome 13, complete
            sequence
          Length = 149507

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 17   ttttcattgactgaagagca 36
            ||||||||||||||||||||
Sbjct: 7119 ttttcattgactgaagagca 7138
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>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome
          Length = 2467205

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 269     agcaggggccgcagccgcag 288
               ||||||||||||||||||||
Sbjct: 2202913 agcaggggccgcagccgcag 2202894
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>gb|AC104645.8| Homo sapiens chromosome 3 clone CTD-2011M13, complete sequence
          Length = 153595

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 150   caatgatttccctctcacat 169
             ||||||||||||||||||||
Sbjct: 89092 caatgatttccctctcacat 89073
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 254     cacgacgacgacggcagcag 273
               ||||||||||||||||||||
Sbjct: 7877258 cacgacgacgacggcagcag 7877277



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 390     cctcgatgtcatctcccttg 409
               ||||||||||||||||||||
Sbjct: 6846025 cctcgatgtcatctcccttg 6846006
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>ref|XM_755998.1| Ustilago maydis 521 hypothetical protein (UM04944.1) partial mRNA
          Length = 4794

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 35   cagcacaacacgctcgcttg 54
            ||||||||||||||||||||
Sbjct: 3152 cagcacaacacgctcgcttg 3133
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>gb|AC164426.5| Mus musculus BAC clone RP24-320I19 from chromosome 13, complete
             sequence
          Length = 160268

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    ttttcattgactgaagagca 36
             ||||||||||||||||||||
Sbjct: 47250 ttttcattgactgaagagca 47231
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>emb|AL157788.16| Human DNA sequence from clone RP11-498J9 on chromosome 10 Contains a
             pseudogene similar to part of lactate dehydrogenase A
             (LDH1) (LDHD), two novel genes, the NANOS1 gene for nanos
             homolog 1 (Drosophila) and one CpG island, complete
             sequence
          Length = 119104

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 313   cagcaggtactcctcatgca 332
             ||||||||||||||||||||
Sbjct: 61669 cagcaggtactcctcatgca 61688
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>gb|AC011558.6| Homo sapiens chromosome 19 clone LLNLR-291F12, complete sequence
          Length = 43128

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 348 tgtcgtccccgcccaccccc 367
           ||||||||||||||||||||
Sbjct: 784 tgtcgtccccgcccaccccc 803
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>dbj|AK052044.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN full-length enriched
            library, clone:D230039H11 product:unclassifiable, full
            insert sequence
          Length = 3938

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 17   ttttcattgactgaagagca 36
            ||||||||||||||||||||
Sbjct: 2860 ttttcattgactgaagagca 2879
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 254     cacgacgacgacggcagcag 273
               ||||||||||||||||||||
Sbjct: 7875093 cacgacgacgacggcagcag 7875112



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 390     cctcgatgtcatctcccttg 409
               ||||||||||||||||||||
Sbjct: 6843922 cctcgatgtcatctcccttg 6843903
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>gb|AC134235.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0030J04, complete sequence
          Length = 153431

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 254   cacgacgacgacggcagcag 273
             ||||||||||||||||||||
Sbjct: 62856 cacgacgacgacggcagcag 62875
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>gb|AC105927.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1781E12,
             complete sequence
          Length = 120392

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 390   cctcgatgtcatctcccttg 409
             ||||||||||||||||||||
Sbjct: 41960 cctcgatgtcatctcccttg 41941
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>gb|AC135157.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1017C11,
             complete sequence
          Length = 166072

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 390   cctcgatgtcatctcccttg 409
             ||||||||||||||||||||
Sbjct: 12622 cctcgatgtcatctcccttg 12603
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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 245    atgtcgtggcacgacgacgacggc 268
              ||||||||||| ||||||||||||
Sbjct: 573423 atgtcgtggcaggacgacgacggc 573446
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>gb|AC004528.1|AC004528 Homo sapiens chromosome 19, cosmid R32184, complete sequence
          Length = 47066

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 348   tgtcgtccccgcccaccccc 367
             ||||||||||||||||||||
Sbjct: 45945 tgtcgtccccgcccaccccc 45964
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>emb|AL669913.15| Mouse DNA sequence from clone RP23-479C2 on chromosome 2, complete
             sequence
          Length = 184221

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 348   tgtcgtccccgcccacccccatgtgcct 375
             |||||||||| ||| |||||||||||||
Sbjct: 83292 tgtcgtccccccccccccccatgtgcct 83319


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,303,560
Number of Sequences: 3902068
Number of extensions: 3303560
Number of successful extensions: 67017
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66632
Number of HSP's gapped (non-prelim): 385
length of query: 488
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 466
effective length of database: 17,147,199,772
effective search space: 7990595093752
effective search space used: 7990595093752
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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