ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart35g04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UMP3_ARATH (Q9LEV3) Protein At5g10860, mitochondrial precursor 91 2e-18
2YR33_THEPE (P15889) Hypothetical 33.4 kDa protein in ribosomal R... 38 0.012
3YBP3_ACIAM (P32987) Hypothetical 17.7 kDa protein in bps2 3'regi... 35 0.077
4YHCV_BACSU (P54606) Hypothetical protein yhcV 30 2.5
5PPAC_THEMA (Q9WZ56) Probable manganese-dependent inorganic pyrop... 29 5.5
6Y653_METJA (Q58069) Hypothetical protein MJ0653 29 5.5
7CSAG2_HUMAN (Q9Y5P2) Chondrosarcoma-associated protein 2 (Taxol ... 29 5.5
8ACE2_SCHPO (O14258) Metallothionein expression activator 29 7.2
9PA22_ERIMA (P24294) Phospholipase A2 isozyme PLA-2 (EC 3.1.1.4) ... 28 9.4
10PA2A_AGKCA (Q7LZQ4) Phospholipase A2, acidic (EC 3.1.1.4) (Phosp... 28 9.4
11PA21B_AGKHP (P14418) Phospholipase A2, acidic (EC 3.1.1.4) (Phos... 28 9.4

>UMP3_ARATH (Q9LEV3) Protein At5g10860, mitochondrial precursor|
          Length = 206

 Score = 90.9 bits (224), Expect = 2e-18
 Identities = 45/56 (80%), Positives = 49/56 (87%)
 Frame = -2

Query: 475 VLQAMQLMTDKRIRHIPVISGAQMMGMVSIGDVVRAVVSEHKEELNRLNAFIQGGY 308
           VL+AMQLMTD RIRHIPVI    M+GMVSIGDVVRAVV EH+EEL RLNA+IQGGY
Sbjct: 151 VLRAMQLMTDNRIRHIPVIKDKGMIGMVSIGDVVRAVVHEHREELQRLNAYIQGGY 206



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>YR33_THEPE (P15889) Hypothetical 33.4 kDa protein in ribosomal RNA operon|
          Length = 300

 Score = 38.1 bits (87), Expect = 0.012
 Identities = 15/40 (37%), Positives = 30/40 (75%)
 Frame = -2

Query: 475 VLQAMQLMTDKRIRHIPVISGAQMMGMVSIGDVVRAVVSE 356
           + + M++M+++RIR +P++SG ++ G+V+I DV+  V  E
Sbjct: 165 LFEGMRVMSERRIRRLPLVSGEELRGIVTIKDVLSYVSRE 204



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>YBP3_ACIAM (P32987) Hypothetical 17.7 kDa protein in bps2 3'region (ORF3)|
          Length = 164

 Score = 35.4 bits (80), Expect = 0.077
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
 Frame = -2

Query: 475 VLQAMQLMTDKRIRHIPVI-SGAQMMGMVSIGDVVRAVVSEHKEELNRLNAFIQG 314
           V  A+ +M +   RH+P+I S  ++ G+VSI D+ RA++  H  +  +    ++G
Sbjct: 85  VTDALDIMLNNGFRHLPIIKSNGKLYGIVSIRDLARALLDVHTMQFGKPAEEVKG 139



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>YHCV_BACSU (P54606) Hypothetical protein yhcV|
          Length = 140

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = -2

Query: 466 AMQLMTDKRIRHIPVISGAQMMGMVSIGDV 377
           A QLM   +IR +P++    ++G+V++GD+
Sbjct: 88  ASQLMAQHQIRRLPIVDQNNLVGIVALGDL 117



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>PPAC_THEMA (Q9WZ56) Probable manganese-dependent inorganic pyrophosphatase (EC|
           3.6.1.1) (Pyrophosphate phospho-hydrolase) (PPase)
          Length = 548

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = -2

Query: 457 LMTDKRIRHIPVISGAQMMGMVSIGDVVRAVVSEHKEE 344
           LM  + I+++PV+S  +M+G+V+  ++ R  V   K E
Sbjct: 96  LMESRGIKNVPVVSKEKMIGVVTESNIARVYVRRLKIE 133



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>Y653_METJA (Q58069) Hypothetical protein MJ0653|
          Length = 194

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 10/35 (28%), Positives = 23/35 (65%)
 Frame = -2

Query: 475 VLQAMQLMTDKRIRHIPVISGAQMMGMVSIGDVVR 371
           + +A ++M    I+ +PV+   +++G+V+  D+VR
Sbjct: 91  ITEAAKIMATHGIKRLPVVKDGELVGIVTQSDIVR 125



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>CSAG2_HUMAN (Q9Y5P2) Chondrosarcoma-associated protein 2 (Taxol|
           resistant-associated protein 3) (TRAG-3)
          Length = 127

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 22/74 (29%), Positives = 28/74 (37%)
 Frame = +3

Query: 180 QVQQPVSTKKHGLFRHHHPGRYCRVHSKGRPANATRRGPGNP*YPPWMKALSRFSSSLCS 359
           QV   +  +  GL +     R     S   P    RRG G     P  +ALS+F   L  
Sbjct: 53  QVDWSILLRDAGLVKMSRKPRASSPLSNNHPPTPKRRGSGRHPLNPGPEALSKFPRQL-- 110

Query: 360 LTTARTTSPIETIP 401
               R   PIE +P
Sbjct: 111 ---GREKGPIEEVP 121



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>ACE2_SCHPO (O14258) Metallothionein expression activator|
          Length = 533

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 207 KHGLFRHHHPGRYCRVHSKGRP 272
           K G  RHH   R+ R+H  GRP
Sbjct: 479 KAGFVRHHDLKRHLRIHENGRP 500



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>PA22_ERIMA (P24294) Phospholipase A2 isozyme PLA-2 (EC 3.1.1.4)|
           (Phosphatidylcholine 2-acylhydrolase)
          Length = 121

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 201 TKKHGLFRHHHPGRYCRVHSKGRPANATRR 290
           T   GLF + + G YC +  KG+P +AT R
Sbjct: 13  TGTFGLFSYVYYGCYCGLGGKGKPLDATDR 42



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>PA2A_AGKCA (Q7LZQ4) Phospholipase A2, acidic (EC 3.1.1.4) (Phosphatidylcholine|
           2-acylhydrolase)
          Length = 124

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 204 KKHGLFRHHHPGRYCRVHSKGRPANATRR 290
           KK G+F + + G YC    +GRP +AT R
Sbjct: 14  KKSGMFWYSNYGCYCGWGGQGRPQDATDR 42



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>PA21B_AGKHP (P14418) Phospholipase A2, acidic (EC 3.1.1.4) (Phosphatidylcholine|
           2-acylhydrolase)
          Length = 124

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 204 KKHGLFRHHHPGRYCRVHSKGRPANATRR 290
           KK G+F + + G YC    +GRP +AT R
Sbjct: 14  KKSGMFWYSNYGCYCGWGGQGRPQDATDR 42


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,923,115
Number of Sequences: 219361
Number of extensions: 1176230
Number of successful extensions: 3456
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3455
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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