ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart35f11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009507.1| Triticum aestivum clone wr1.pk0089.e5:fis, full i... 80 7e-12
2ref|XM_450330.1| Oryza sativa (japonica cultivar-group), mRNA 76 1e-10
3dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
4dbj|AP005589.2| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
5emb|CR726233.2|CNS0GNB3 Tetraodon nigroviridis full-length cDNA 50 0.007
6gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 46 0.10
7gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome 46 0.10
8ref|XM_757470.1| Ustilago maydis 521 hypothetical protein (UM064... 44 0.41
9gb|AC061709.25| Homo sapiens 12 BAC RP11-417O18 (Roswell Park Ca... 44 0.41
10emb|CR642078.2|CNS0EUEC Tetraodon nigroviridis full-length cDNA 42 1.6
11emb|CR638556.2|CNS0EROI Tetraodon nigroviridis full-length cDNA 42 1.6
12gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 6.4
13gb|BC049903.1| Mus musculus VPR domain containing 9, mRNA (cDNA ... 40 6.4
14gb|BC023014.1| Mus musculus VPR domain containing 9, mRNA (cDNA ... 40 6.4
15gb|AC008228.5| Drosophila melanogaster clone BACR23E23, complete... 40 6.4
16gb|AC010123.9| Drosophila melanogaster clone BACR35O22, complete... 40 6.4
17ref|XM_655960.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 6.4
18ref|XM_977404.1| PREDICTED: Mus musculus VPR domain containing 9... 40 6.4
19ref|XM_977446.1| PREDICTED: Mus musculus VPR domain containing 9... 40 6.4
20ref|XM_911812.2| PREDICTED: Mus musculus VPR domain containing 9... 40 6.4
21ref|XM_899365.2| PREDICTED: Mus musculus VPR domain containing 9... 40 6.4
22ref|XM_619431.3| PREDICTED: Mus musculus VPR domain containing 9... 40 6.4
23emb|CR732898.2|CNS0GSFG Tetraodon nigroviridis full-length cDNA 40 6.4
24emb|CR732586.2|CNS0GS7J Tetraodon nigroviridis full-length cDNA 40 6.4
25emb|CR732119.2|CNS0GRUK Tetraodon nigroviridis full-length cDNA 40 6.4
26emb|CR729003.2|CNS0GPG1 Tetraodon nigroviridis full-length cDNA 40 6.4
27emb|CR725993.2|CNS0GN4F Tetraodon nigroviridis full-length cDNA 40 6.4
28emb|CR724978.2|CNS0GMC8 Tetraodon nigroviridis full-length cDNA 40 6.4
29emb|CR702462.2|CNS0G4YY Tetraodon nigroviridis full-length cDNA 40 6.4
30emb|CR696460.2|CNS0G0C8 Tetraodon nigroviridis full-length cDNA 40 6.4
31emb|CR694433.2|CNS0FYRX Tetraodon nigroviridis full-length cDNA 40 6.4
32emb|CR691585.2|CNS0FWKT Tetraodon nigroviridis full-length cDNA 40 6.4
33gb|AC073852.4| Homo sapiens BAC clone RP11-706L12 from 7, comple... 40 6.4
34gb|AC011287.4| Homo sapiens BAC clone RP11-22K15 from 7, complet... 40 6.4
35gb|AC142355.1| Pan troglodytes BAC clone RP43-22I16 from 7, comp... 40 6.4
36emb|Z49085.1|MMMDK2 M.musculus mRNA for mouse developmental kina... 40 6.4
37gb|AC156023.2| Mus musculus BAC clone RP23-210I15 from chromosom... 40 6.4
38gb|AC142396.25| Medicago truncatula clone mth2-6g9, complete seq... 40 6.4
39gb|AC061997.12| Homo sapiens chromosome 11, clone RP11-324K6, co... 40 6.4
40ref|XM_628640.1| Cryptosporidium parvum Iowa II hypothetical pro... 40 6.4
41gb|AC022209.4|AC022209 Homo sapiens BAC clone RP11-588M21 from 1... 40 6.4
42dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
43gb|AC011816.17|AC011816 Homo sapiens chromosome 3, clone RP11-12... 40 6.4
44gb|AY217549.1| Homo sapiens mutL homolog 1, colon cancer, nonpol... 40 6.4
45dbj|AP005518.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
46dbj|AK070507.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.4
47gb|AE003587.4| Drosophila melanogaster chromosome 2L, section 4 ... 40 6.4
48emb|CT033750.18| Mouse DNA sequence from clone RP23-263M5 on chr... 40 6.4
49dbj|AP000684.4| Homo sapiens genomic DNA, chromosome 11q clone:C... 40 6.4
50gb|BC012016.1| Mus musculus VPR domain containing 9, mRNA (cDNA ... 40 6.4
51gb|L47295.1|HACGLDE Haloarcula vallismortis glyceraldehydephosph... 40 6.4 
>gb|BT009507.1| Triticum aestivum clone wr1.pk0089.e5:fis, full insert mRNA
           sequence
          Length = 634

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 91/108 (84%)
 Strand = Plus / Minus

                                                                       
Query: 368 cgaggaagctcgcgagcttcctagcaaccttgagtggatccgacacaatctcttcgtacc 427
           |||||||||| || |||||||||  ||||||| |||  || |||| |||||| || ||||
Sbjct: 250 cgaggaagcttgctagcttcctaataaccttgggtgtgtctgacataatctcctcatacc 191

                                                           
Query: 428 tgagaaacatcacctcttgcggcctcgccaagctttcttcccagtact 475
           | ||||||||||||||| | || |||||||| ||||||| ||||||||
Sbjct: 190 tcagaaacatcacctctcgtggtctcgccaaactttctttccagtact 143



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                         
Query: 176 tcatgtggttcacccagtccccaaccttccctttcctgaacagcga 221
           |||||||||||||||| || ||||||| ||||||||| ||||||||
Sbjct: 448 tcatgtggttcacccaatctccaacctcccctttcctaaacagcga 403
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>ref|XM_450330.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 843

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 80/94 (85%)
 Strand = Plus / Minus

                                                                       
Query: 115 agaccagatcctttgaacttttcctccacgaggcgatccattttctctcccatttctttg 174
           ||||| |||||||||||||| |||||||| ||  |||||| ||| |||||||| ||||||
Sbjct: 833 agacctgatcctttgaacttgtcctccacaagttgatccagtttttctcccatgtctttg 774

                                             
Query: 175 gtcatgtggttcacccagtccccaaccttccctt 208
            |||| ||||| ||||| ||||||  ||||||||
Sbjct: 773 ctcatatggttaacccaatccccagtcttccctt 740
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 80/94 (85%)
 Strand = Plus / Minus

                                                                           
Query: 115     agaccagatcctttgaacttttcctccacgaggcgatccattttctctcccatttctttg 174
               ||||| |||||||||||||| |||||||| ||  |||||| ||| |||||||| ||||||
Sbjct: 4197561 agacctgatcctttgaacttgtcctccacaagttgatccagtttttctcccatgtctttg 4197502

                                                 
Query: 175     gtcatgtggttcacccagtccccaaccttccctt 208
                |||| ||||| ||||| ||||||  ||||||||
Sbjct: 4197501 ctcatatggttaacccaatccccagtcttccctt 4197468
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>dbj|AP005589.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0523B07
          Length = 170510

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 80/94 (85%)
 Strand = Plus / Minus

                                                                         
Query: 115   agaccagatcctttgaacttttcctccacgaggcgatccattttctctcccatttctttg 174
             ||||| |||||||||||||| |||||||| ||  |||||| ||| |||||||| ||||||
Sbjct: 21320 agacctgatcctttgaacttgtcctccacaagttgatccagtttttctcccatgtctttg 21261

                                               
Query: 175   gtcatgtggttcacccagtccccaaccttccctt 208
              |||| ||||| ||||| ||||||  ||||||||
Sbjct: 21260 ctcatatggttaacccaatccccagtcttccctt 21227
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>emb|CR726233.2|CNS0GNB3 Tetraodon nigroviridis full-length cDNA
          Length = 1335

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 181  tggttcacccagtccccaaccttcccttt 209
            |||||| ||||||||||||||||||||||
Sbjct: 1097 tggttctcccagtccccaaccttcccttt 1069
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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                              
Query: 354     ggtgaagggcgcgtcgaggaagctcgcgagc 384
               |||||||||| |||||||||||| |||||||
Sbjct: 2891778 ggtgaagggcacgtcgaggaagcgcgcgagc 2891748
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>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 339    cttctcctcgtcttcggtgaagg 361
              |||||||||||||||||||||||
Sbjct: 894700 cttctcctcgtcttcggtgaagg 894722
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>ref|XM_757470.1| Ustilago maydis 521 hypothetical protein (UM06416.1) partial mRNA
          Length = 1938

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 294  tgattcgaagctgcagaagctc 315
            ||||||||||||||||||||||
Sbjct: 1695 tgattcgaagctgcagaagctc 1716
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>gb|AC061709.25| Homo sapiens 12 BAC RP11-417O18 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 208524

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 155   ttttctctcccatttctttggt 176
             ||||||||||||||||||||||
Sbjct: 68124 ttttctctcccatttctttggt 68103
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>emb|CR642078.2|CNS0EUEC Tetraodon nigroviridis full-length cDNA
          Length = 914

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 189 ccagtccccaaccttcccttt 209
           |||||||||||||||||||||
Sbjct: 729 ccagtccccaaccttcccttt 709
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>emb|CR638556.2|CNS0EROI Tetraodon nigroviridis full-length cDNA
          Length = 1001

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 189 ccagtccccaaccttcccttt 209
           |||||||||||||||||||||
Sbjct: 794 ccagtccccaaccttcccttt 774
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 348     gtcttcggtgaagggcgcgt 367
               ||||||||||||||||||||
Sbjct: 3078579 gtcttcggtgaagggcgcgt 3078560
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>gb|BC049903.1| Mus musculus VPR domain containing 9, mRNA (cDNA clone IMAGE:4501059)
          Length = 1450

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 307  cagaagctcacaacctggtc 326
            ||||||||||||||||||||
Sbjct: 1237 cagaagctcacaacctggtc 1218
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>gb|BC023014.1| Mus musculus VPR domain containing 9, mRNA (cDNA clone
           IMAGE:5365459), containing frame-shift errors
          Length = 1215

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 307 cagaagctcacaacctggtc 326
           ||||||||||||||||||||
Sbjct: 758 cagaagctcacaacctggtc 739
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>gb|AC008228.5| Drosophila melanogaster clone BACR23E23, complete sequence
          Length = 162949

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 334    ccgctcttctcctcgtcttc 353
              ||||||||||||||||||||
Sbjct: 130217 ccgctcttctcctcgtcttc 130198
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>gb|AC010123.9| Drosophila melanogaster clone BACR35O22, complete sequence
          Length = 160444

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 334   ccgctcttctcctcgtcttc 353
             ||||||||||||||||||||
Sbjct: 76304 ccgctcttctcctcgtcttc 76285
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>ref|XM_655960.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN3448.2), mRNA
          Length = 2655

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 186  cacccagtccccaaccttcc 205
            ||||||||||||||||||||
Sbjct: 1122 cacccagtccccaaccttcc 1103
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>ref|XM_977404.1| PREDICTED: Mus musculus VPR domain containing 9, transcript variant
           1 (Prdm9), mRNA
          Length = 963

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 307 cagaagctcacaacctggtc 326
           ||||||||||||||||||||
Sbjct: 758 cagaagctcacaacctggtc 739
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>ref|XM_977446.1| PREDICTED: Mus musculus VPR domain containing 9, transcript variant 2
            (Prdm9), mRNA
          Length = 1442

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 307  cagaagctcacaacctggtc 326
            ||||||||||||||||||||
Sbjct: 1237 cagaagctcacaacctggtc 1218
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>ref|XM_911812.2| PREDICTED: Mus musculus VPR domain containing 9, transcript variant 3
            (Prdm9), mRNA
          Length = 1442

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 307  cagaagctcacaacctggtc 326
            ||||||||||||||||||||
Sbjct: 1237 cagaagctcacaacctggtc 1218
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>ref|XM_899365.2| PREDICTED: Mus musculus VPR domain containing 9, transcript variant
           2 (Prdm9), mRNA
          Length = 963

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 307 cagaagctcacaacctggtc 326
           ||||||||||||||||||||
Sbjct: 758 cagaagctcacaacctggtc 739
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>ref|XM_619431.3| PREDICTED: Mus musculus VPR domain containing 9, transcript variant 1
            (Prdm9), mRNA
          Length = 1442

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 307  cagaagctcacaacctggtc 326
            ||||||||||||||||||||
Sbjct: 1237 cagaagctcacaacctggtc 1218
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>emb|CR732898.2|CNS0GSFG Tetraodon nigroviridis full-length cDNA
          Length = 1026

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 180 gtggttcacccagtccccaaccttccctttcc 211
           |||||||  |||||| ||||||||||||||||
Sbjct: 656 gtggttcttccagtcgccaaccttccctttcc 625
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>emb|CR732586.2|CNS0GS7J Tetraodon nigroviridis full-length cDNA
          Length = 1142

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 180 gtggttcacccagtccccaaccttccctttcc 211
           |||||||  |||||| ||||||||||||||||
Sbjct: 782 gtggttcttccagtcgccaaccttccctttcc 751
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>emb|CR732119.2|CNS0GRUK Tetraodon nigroviridis full-length cDNA
          Length = 1013

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 180 gtggttcacccagtccccaaccttccctttcc 211
           |||||||  |||||| ||||||||||||||||
Sbjct: 655 gtggttcttccagtcgccaaccttccctttcc 624
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>emb|CR729003.2|CNS0GPG1 Tetraodon nigroviridis full-length cDNA
          Length = 1123

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 180 gtggttcacccagtccccaaccttccctttcc 211
           |||||||  |||||| ||||||||||||||||
Sbjct: 782 gtggttcttccagtcgccaaccttccctttcc 751
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>emb|CR725993.2|CNS0GN4F Tetraodon nigroviridis full-length cDNA
          Length = 1028

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 180 gtggttcacccagtccccaaccttccctttcc 211
           |||||||  |||||| ||||||||||||||||
Sbjct: 655 gtggttcttccagtcgccaaccttccctttcc 624
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>emb|CR724978.2|CNS0GMC8 Tetraodon nigroviridis full-length cDNA
          Length = 977

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 180 gtggttcacccagtccccaaccttccctttcc 211
           |||||||  |||||| ||||||||||||||||
Sbjct: 656 gtggttcttccagtcgccaaccttccctttcc 625
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>emb|CR702462.2|CNS0G4YY Tetraodon nigroviridis full-length cDNA
          Length = 949

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 180 gtggttcacccagtccccaaccttccctttcc 211
           |||||||  |||||| ||||||||||||||||
Sbjct: 782 gtggttcttccagtcgccaaccttccctttcc 751
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>emb|CR696460.2|CNS0G0C8 Tetraodon nigroviridis full-length cDNA
          Length = 782

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 180 gtggttcacccagtccccaaccttccctttcc 211
           |||||||  |||||| ||||||||||||||||
Sbjct: 656 gtggttcttccagtcgccaaccttccctttcc 625
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>emb|CR694433.2|CNS0FYRX Tetraodon nigroviridis full-length cDNA
          Length = 923

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 180 gtggttcacccagtccccaaccttccctttcc 211
           |||||||  |||||| ||||||||||||||||
Sbjct: 82  gtggttcttccagtcaccaaccttccctttcc 51
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>emb|CR691585.2|CNS0FWKT Tetraodon nigroviridis full-length cDNA
          Length = 921

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 180 gtggttcacccagtccccaaccttccctttcc 211
           |||||||  |||||| ||||||||||||||||
Sbjct: 656 gtggttcttccagtcgccaaccttccctttcc 625
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>gb|AC073852.4| Homo sapiens BAC clone RP11-706L12 from 7, complete sequence
          Length = 14999

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 18   cagggcagattatttattct 37
            ||||||||||||||||||||
Sbjct: 2400 cagggcagattatttattct 2381
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>gb|AC011287.4| Homo sapiens BAC clone RP11-22K15 from 7, complete sequence
          Length = 132943

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 153   cattttctctcccatttctt 172
             ||||||||||||||||||||
Sbjct: 71271 cattttctctcccatttctt 71290
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>gb|AC142355.1| Pan troglodytes BAC clone RP43-22I16 from 7, complete sequence
          Length = 192927

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 153   cattttctctcccatttctt 172
             ||||||||||||||||||||
Sbjct: 22123 cattttctctcccatttctt 22142
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>emb|Z49085.1|MMMDK2 M.musculus mRNA for mouse developmental kinase 2 (MDK2)
          Length = 4479

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 230  ggatggaaatcttgcctccc 249
            ||||||||||||||||||||
Sbjct: 2446 ggatggaaatcttgcctccc 2427
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>gb|AC156023.2| Mus musculus BAC clone RP23-210I15 from chromosome 16, complete
             sequence
          Length = 196765

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 124   cctttgaacttttcctccac 143
             ||||||||||||||||||||
Sbjct: 79269 cctttgaacttttcctccac 79288
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>gb|AC142396.25| Medicago truncatula clone mth2-6g9, complete sequence
          Length = 106058

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 151   tccattttctctcccatttc 170
             ||||||||||||||||||||
Sbjct: 52135 tccattttctctcccatttc 52154
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>gb|AC061997.12| Homo sapiens chromosome 11, clone RP11-324K6, complete sequence
          Length = 106216

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 123   tcctttgaacttttcctcca 142
             ||||||||||||||||||||
Sbjct: 24324 tcctttgaacttttcctcca 24343
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>ref|XM_628640.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd7_4980),
           partial mRNA
          Length = 6456

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 150 atccattttctctcccattt 169
           ||||||||||||||||||||
Sbjct: 281 atccattttctctcccattt 300
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>gb|AC022209.4|AC022209 Homo sapiens BAC clone RP11-588M21 from 11, complete sequence
          Length = 177314

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 123  tcctttgaacttttcctcca 142
            ||||||||||||||||||||
Sbjct: 8581 tcctttgaacttttcctcca 8562
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 175     gtcatgtggttcacccagtc 194
               ||||||||||||||||||||
Sbjct: 7945849 gtcatgtggttcacccagtc 7945830
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>gb|AC011816.17|AC011816 Homo sapiens chromosome 3, clone RP11-129K12, complete sequence
          Length = 169313

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 19     agggcagattatttattctt 38
              ||||||||||||||||||||
Sbjct: 162493 agggcagattatttattctt 162512
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>gb|AY217549.1| Homo sapiens mutL homolog 1, colon cancer, nonpolyposis type 2 (E.
             coli) (MLH1) gene, complete cds
          Length = 60250

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 19    agggcagattatttattctt 38
             ||||||||||||||||||||
Sbjct: 21257 agggcagattatttattctt 21276
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>dbj|AP005518.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0046H10
          Length = 155544

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 175   gtcatgtggttcacccagtc 194
             ||||||||||||||||||||
Sbjct: 53367 gtcatgtggttcacccagtc 53348
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>dbj|AK070507.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054C04, full
            insert sequence
          Length = 1260

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 175  gtcatgtggttcacccagtc 194
            ||||||||||||||||||||
Sbjct: 1050 gtcatgtggttcacccagtc 1031
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>gb|AE003587.4| Drosophila melanogaster chromosome 2L, section 4 of 83 of the complete
              sequence
          Length = 314549

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 334    ccgctcttctcctcgtcttc 353
              ||||||||||||||||||||
Sbjct: 142572 ccgctcttctcctcgtcttc 142553
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>emb|CT033750.18| Mouse DNA sequence from clone RP23-263M5 on chromosome 17, complete
             sequence
          Length = 268616

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 307   cagaagctcacaacctggtc 326
             ||||||||||||||||||||
Sbjct: 79366 cagaagctcacaacctggtc 79385
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>dbj|AP000684.4| Homo sapiens genomic DNA, chromosome 11q clone:CMB9-57N12, complete
             sequences
          Length = 141977

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 46    tgcagatagattccataatacatcaaca 73
             ||||||||||||| |||||||| |||||
Sbjct: 82436 tgcagatagattcaataatacaacaaca 82463
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>gb|BC012016.1| Mus musculus VPR domain containing 9, mRNA (cDNA clone
            IMAGE:4501059), complete cds
          Length = 1450

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 307  cagaagctcacaacctggtc 326
            ||||||||||||||||||||
Sbjct: 1237 cagaagctcacaacctggtc 1218
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>gb|L47295.1|HACGLDE Haloarcula vallismortis glyceraldehydephosphate dehydrogenase and
            phosphoglycerate kinase genes, complete cds
          Length = 2762

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 347  cgtcttcggtgaagggcgcg 366
            ||||||||||||||||||||
Sbjct: 2362 cgtcttcggtgaagggcgcg 2381


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,894,335
Number of Sequences: 3902068
Number of extensions: 3894335
Number of successful extensions: 75575
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75405
Number of HSP's gapped (non-prelim): 170
length of query: 477
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 455
effective length of database: 17,147,199,772
effective search space: 7801975896260
effective search space used: 7801975896260
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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