ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart35f09 |
|---|---|
| Clone Library Name | barley_pub |
>5NG4_PINTA (Q6J163) Auxin-induced protein 5NG4| Length = 410 Score = 34.3 bits (77), Expect = 0.19 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 14/75 (18%) Frame = -3 Query: 491 HIGSLLGAFAVVAGLYIVLWGKAGDVKTRRAAERADDLEKTWSDSQLLDA---------- 342 ++G + GA ++ GLY+VLWGK+ + + ++ + + D+ A Sbjct: 319 YLGGIFGAILIIIGLYLVLWGKSEEKRLGLLQAKSSMVPENQPDNMDQSATLIINSSNGI 378 Query: 341 ----ESTTTEPLLAD 309 S+ T+PLL D Sbjct: 379 KPNTSSSLTQPLLLD 393
>AGO2_DROME (Q9VUQ5) Argonaute 2 protein| Length = 1214 Score = 31.2 bits (69), Expect = 1.6 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%) Frame = -2 Query: 423 RGRQDPEGGGARR*SGKDMVGLAAPRRGKH-DHRAAPSGRQPDREVGALQFWNSR*PQ 253 +GRQ EGG +R SG+ G R+G+ ++ P G+QP++ Q+ + PQ Sbjct: 331 QGRQGQEGGYQQRPSGQQQGGHQQGRQGQEGGYQQRPPGQQPNQTQSQGQYQSRGPPQ 388
>TR13B_HUMAN (O14836) Tumor necrosis factor receptor superfamily member 13B| (Transmembrane activator and CAML interactor) (CD267 antigen) Length = 293 Score = 30.8 bits (68), Expect = 2.1 Identities = 16/43 (37%), Positives = 16/43 (37%), Gaps = 5/43 (11%) Frame = +2 Query: 269 FQNCRAPTSRSGCRP-----LGAARWSCFPRRGAASPTMSFPD 382 F CRAPT S P A RW C R P PD Sbjct: 234 FPECRAPTQESAVTPGTPDPTCAGRWGCHTRTTVLQPCPHIPD 276
>ST18_RAT (Q9QX27) Suppression of tumorigenicity protein 18 (Neural zinc| finger factor 3) (NZF-3) (C2-HC type zinc finger protein r-MyT3) Length = 1032 Score = 30.0 bits (66), Expect = 3.5 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +3 Query: 15 MIDCSTPSCEGNVAVTGNALAHLKFVG 95 +I C TP C+G+ VTGN +H G Sbjct: 706 LITCPTPGCDGSGHVTGNYASHRSVSG 732 Score = 28.9 bits (63), Expect = 7.8 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = +3 Query: 18 IDCSTPSCEGNVAVTGNALAHLKFVG 95 + C TP C+G+ VTGN +H G Sbjct: 751 LKCPTPGCDGSGHVTGNYASHRSLSG 776
>RK9_ARATH (P25864) 50S ribosomal protein L9, chloroplast precursor (CL9)| Length = 197 Score = 30.0 bits (66), Expect = 3.5 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Frame = +3 Query: 189 VLSLEKQPWRLEL*SSYIRP*AEVTGYSKIAEPLLLDPVVVR*ERLGGRAFRV-EELRVR 365 V L KQ L++ + + R TG +++ PLLL + + ER+ RV EE + Sbjct: 58 VTDLGKQGQLLDVKAGFFRNFLLPTGKAQLMTPLLLKELKMEDERIEAEKQRVKEEAQQL 117 Query: 366 PCLFQIIGALR 398 +FQ +GA + Sbjct: 118 AMVFQTVGAFK 128
>ST18_MOUSE (Q80TY4) Suppression of tumorigenicity protein 18| Length = 1045 Score = 30.0 bits (66), Expect = 3.5 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +3 Query: 15 MIDCSTPSCEGNVAVTGNALAHLKFVG 95 +I C TP C+G+ VTGN +H G Sbjct: 719 LITCPTPGCDGSGHVTGNYASHRSVSG 745 Score = 28.9 bits (63), Expect = 7.8 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = +3 Query: 18 IDCSTPSCEGNVAVTGNALAHLKFVG 95 + C TP C+G+ VTGN +H G Sbjct: 764 LKCPTPGCDGSGHVTGNYASHRSLSG 789
>END4_THET2 (Q72KH8) Probable endonuclease 4 (EC 3.1.21.2) (Endonuclease IV)| (Endodeoxyribonuclease IV) Length = 270 Score = 30.0 bits (66), Expect = 3.5 Identities = 22/71 (30%), Positives = 32/71 (45%) Frame = -3 Query: 473 GAFAVVAGLYIVLWGKAGDVKTRRAAERADDLEKTWSDSQLLDAESTTTEPLLADDNRIE 294 G AV+ Y+V G G++ + A ADDLEK + LL E P R++ Sbjct: 63 GLPAVIHASYLVNLGAEGELWEKSVASLADDLEK----AALLGVEYVVVHPGSGRPERVK 118 Query: 293 K*GLCNFGIAG 261 + L +AG Sbjct: 119 EGALKALRLAG 129
>SYFB_HAEDU (Q7VLG3) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 795 Score = 30.0 bits (66), Expect = 3.5 Identities = 16/76 (21%), Positives = 37/76 (48%), Gaps = 1/76 (1%) Frame = +3 Query: 72 LAHLKFVGLNNIYGHYLIFLYISGVIMAMAM-ATCSTSTLVLSLEKQPWRLEL*SSYIRP 248 + L+ L+++ GHY+ ++ +++ + + TC + ++ + LE+ I Sbjct: 406 IIRLRRTKLDSVIGHYIEDRLVTDILVRLGLNVTCENDGWIATVPSWRFDLEIEEDLIEE 465 Query: 249 *AEVTGYSKIAEPLLL 296 A + GY++I LL Sbjct: 466 IARIYGYNRIPNNALL 481
>ST18_HUMAN (O60284) Suppression of tumorigenicity protein 18 (Zinc finger| protein 387) Length = 1047 Score = 30.0 bits (66), Expect = 3.5 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +3 Query: 15 MIDCSTPSCEGNVAVTGNALAHLKFVG 95 +I C TP C+G+ VTGN +H G Sbjct: 721 LITCPTPGCDGSGHVTGNYASHRSVSG 747 Score = 28.9 bits (63), Expect = 7.8 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = +3 Query: 18 IDCSTPSCEGNVAVTGNALAHLKFVG 95 + C TP C+G+ VTGN +H G Sbjct: 766 LKCPTPGCDGSGHVTGNYASHRSLSG 791
>MYT1_XENLA (P70047) Myelin transcription factor 1 (X-MyT1)| Length = 1122 Score = 29.6 bits (65), Expect = 4.6 Identities = 10/27 (37%), Positives = 16/27 (59%) Frame = +3 Query: 15 MIDCSTPSCEGNVAVTGNALAHLKFVG 95 ++ C TP C+G+ +TGN +H G Sbjct: 794 LLSCPTPGCDGSGHITGNYASHRSLSG 820
>CPPB_NEIGO (P07049) Cryptic plasmid protein B| Length = 213 Score = 29.6 bits (65), Expect = 4.6 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 12/77 (15%) Frame = -3 Query: 491 HIGSLLGAFA----VVAGLYIVLW---GKAGDVKTRRA-AERADDLEKTWSDSQLLD--- 345 ++ SLLG A V+AGL+I +W + D+K +RA AER DL +T + L+ Sbjct: 67 YLWSLLGISAAGLIVIAGLFIAIWSVKNELDDLKQQRAEAERTLDLLETKTKGLTLENCP 126 Query: 344 -AESTTTEPLLADDNRI 297 S T +A + R+ Sbjct: 127 VENSKATRVCVATEKRM 143
>MYT1_MOUSE (Q8CFC2) Myelin transcription factor 1 (MyT1) (Neural zinc finger| factor 2) (NZF-2) Length = 1127 Score = 29.3 bits (64), Expect = 6.0 Identities = 10/27 (37%), Positives = 16/27 (59%) Frame = +3 Query: 15 MIDCSTPSCEGNVAVTGNALAHLKFVG 95 ++ C TP C+G+ +TGN +H G Sbjct: 799 LLTCPTPGCDGSGHITGNYASHRSLSG 825
>XYNB_PRUPE (P83344) Putative beta-D-xylosidase (EC 3.2.1.-) (PpAz152)| (Fragment) Length = 461 Score = 29.3 bits (64), Expect = 6.0 Identities = 15/39 (38%), Positives = 18/39 (46%) Frame = -1 Query: 493 RTSEACWVRSPWSRGCTSCCGAKQGTSRPGGRRSAPMIW 377 R S WV P G T+ GT+ PGG+ PM W Sbjct: 233 RISAIIWVGYPGQAGGTAIANVLFGTANPGGK--LPMTW 269
>MYT1_HUMAN (Q01538) Myelin transcription factor 1 (MyT1) (MyTI) (Proteolipid| protein-binding protein) (PLPB1) Length = 1121 Score = 29.3 bits (64), Expect = 6.0 Identities = 10/27 (37%), Positives = 16/27 (59%) Frame = +3 Query: 15 MIDCSTPSCEGNVAVTGNALAHLKFVG 95 ++ C TP C+G+ +TGN +H G Sbjct: 797 LLTCPTPGCDGSGHITGNYASHRSLSG 823
>GATA_ENTFA (Q837V3) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)| (Glu-ADT subunit A) Length = 489 Score = 29.3 bits (64), Expect = 6.0 Identities = 18/51 (35%), Positives = 26/51 (50%) Frame = -3 Query: 479 LLGAFAVVAGLYIVLWGKAGDVKTRRAAERADDLEKTWSDSQLLDAESTTT 327 +LG F++ AG Y + KAG V+T D E ++D L+ ST T Sbjct: 359 MLGTFSLSAGYYDAHFKKAGQVRTL----IKQDFENVFADYDLIIGPSTPT 405
>GATA_STRP3 (Q8K617) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)| (Glu-ADT subunit A) Length = 488 Score = 28.9 bits (63), Expect = 7.8 Identities = 16/51 (31%), Positives = 28/51 (54%) Frame = -3 Query: 479 LLGAFAVVAGLYIVLWGKAGDVKTRRAAERADDLEKTWSDSQLLDAESTTT 327 +LG F++ +G Y + KAG V+T +D +K ++D L+ +T T Sbjct: 358 MLGTFSLSSGYYDAYFKKAGQVRTL----IIEDFDKVFADYDLILGPTTPT 404 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,705,625 Number of Sequences: 219361 Number of extensions: 1147417 Number of successful extensions: 3236 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3094 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3235 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3478785780 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
