ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart35f09 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 61.9 bits (31), Expect = 2e-06 Identities = 31/31 (100%) Strand = Plus / Plus Query: 422 ctgctttgccccacagcacgatgtacagccc 452 ||||||||||||||||||||||||||||||| Sbjct: 15410456 ctgctttgccccacagcacgatgtacagccc 15410486
>dbj|AP005568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1299_A11 Length = 160099 Score = 61.9 bits (31), Expect = 2e-06 Identities = 31/31 (100%) Strand = Plus / Plus Query: 422 ctgctttgccccacagcacgatgtacagccc 452 ||||||||||||||||||||||||||||||| Sbjct: 59748 ctgctttgccccacagcacgatgtacagccc 59778
>dbj|AK070341.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050L03, full insert sequence Length = 3713 Score = 61.9 bits (31), Expect = 2e-06 Identities = 31/31 (100%) Strand = Plus / Minus Query: 422 ctgctttgccccacagcacgatgtacagccc 452 ||||||||||||||||||||||||||||||| Sbjct: 3346 ctgctttgccccacagcacgatgtacagccc 3316
>ref|NM_184112.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1353 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 426 tttgccccacagcacgatgtacagccc 452 ||||||||||||||||| ||||||||| Sbjct: 1079 tttgccccacagcacgaagtacagccc 1053
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 426 tttgccccacagcacgatgtacagccc 452 ||||||||||||||||| ||||||||| Sbjct: 1010991 tttgccccacagcacgaagtacagccc 1010965 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 430 ccccacagcacgatgtacagccccgcgac 458 ||||||||||| ||||||||||| ||||| Sbjct: 10912314 ccccacagcaccatgtacagcccggcgac 10912286 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 427 ttgccccacagcacgatgtacagccccgcgac 458 |||||||| |||||| ||||||||||| |||| Sbjct: 10879615 ttgccccagagcacggtgtacagccccacgac 10879584
>dbj|AP002747.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0698G03 Length = 147857 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 426 tttgccccacagcacgatgtacagccc 452 ||||||||||||||||| ||||||||| Sbjct: 146436 tttgccccacagcacgaagtacagccc 146410
>dbj|AP002541.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0494A10 Length = 145576 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 426 tttgccccacagcacgatgtacagccc 452 ||||||||||||||||| ||||||||| Sbjct: 48659 tttgccccacagcacgaagtacagccc 48633
>dbj|AK104596.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-E02, full insert sequence Length = 1353 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 426 tttgccccacagcacgatgtacagccc 452 ||||||||||||||||| ||||||||| Sbjct: 1079 tttgccccacagcacgaagtacagccc 1053
>dbj|AK104611.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-C11, full insert sequence Length = 1369 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 426 tttgccccacagcacgatgtacagccc 452 ||||||||||||||||| ||||||||| Sbjct: 1082 tttgccccacagcacgaagtacagccc 1056
>dbj|AK099425.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013010E01, full insert sequence Length = 1185 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 426 tttgccccacagcacgatgtacagccc 452 ||||||||||||||||| ||||||||| Sbjct: 776 tttgccccacagcacgaagtacagccc 750
>dbj|AK061406.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-A04, full insert sequence Length = 1488 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 426 tttgccccacagcacgatgtacagccc 452 ||||||||||||||||| ||||||||| Sbjct: 1076 tttgccccacagcacgaagtacagccc 1050
>gb|AY680404.1| Pinus taeda homeobox transcription factor KN3 (Kn3) mRNA, complete cds Length = 1903 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 148 tcatggccatggccatggcca 168 ||||||||||||||||||||| Sbjct: 368 tcatggccatggccatggcca 388 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 catggccatggccatggcca 168 |||||||||||||||||||| Sbjct: 390 catggccatggccatggcca 371
>ref|NM_181373.2| Rattus norvegicus glutamate receptor, ionotropic, kainate 3 (Grik3), mRNA Length = 3633 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 143 cgtcatcatggccatggccatggcc 167 |||||||||| |||||||||||||| Sbjct: 890 cgtcatcatgcccatggccatggcc 866
>ref|NM_183664.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1143 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 430 ccccacagcacgatgtacagccccgcgac 458 ||||||||||| ||||||||||| ||||| Sbjct: 980 ccccacagcaccatgtacagcccggcgac 952
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 148 tcatggccatggccatggcca 168 ||||||||||||||||||||| Sbjct: 34732410 tcatggccatggccatggcca 34732430
>ref|XM_993378.1| PREDICTED: Mus musculus glutamate receptor, ionotropic, kainate 3, transcript variant 1 (Grik3), mRNA Length = 2733 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 143 cgtcatcatggccatggccatggcc 167 |||||||||| |||||||||||||| Sbjct: 756 cgtcatcatgcccatggccatggcc 732
>ref|XM_993401.1| PREDICTED: Mus musculus glutamate receptor, ionotropic, kainate 3, transcript variant 2 (Grik3), mRNA Length = 3017 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 143 cgtcatcatggccatggccatggcc 167 |||||||||| |||||||||||||| Sbjct: 756 cgtcatcatgcccatggccatggcc 732
>ref|XM_975859.1| PREDICTED: Mus musculus glutamate receptor, ionotropic, kainate 3, transcript variant 2 (Grik3), mRNA Length = 2733 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 143 cgtcatcatggccatggccatggcc 167 |||||||||| |||||||||||||| Sbjct: 756 cgtcatcatgcccatggccatggcc 732
>ref|XM_131647.6| PREDICTED: Mus musculus glutamate receptor, ionotropic, kainate 3, transcript variant 1 (Grik3), mRNA Length = 3017 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 143 cgtcatcatggccatggccatggcc 167 |||||||||| |||||||||||||| Sbjct: 756 cgtcatcatgcccatggccatggcc 732
>ref|XM_922190.2| PREDICTED: Mus musculus glutamate receptor, ionotropic, kainate 3, transcript variant 4 (Grik3), mRNA Length = 2733 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 143 cgtcatcatggccatggccatggcc 167 |||||||||| |||||||||||||| Sbjct: 756 cgtcatcatgcccatggccatggcc 732
>ref|XM_922182.2| PREDICTED: Mus musculus glutamate receptor, ionotropic, kainate 3, transcript variant 3 (Grik3), mRNA Length = 3017 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 143 cgtcatcatggccatggccatggcc 167 |||||||||| |||||||||||||| Sbjct: 756 cgtcatcatgcccatggccatggcc 732
>gb|AC092557.7| Oryza sativa chromosome 3 BAC OSJNBa0096I06 genomic sequence, complete sequence Length = 164352 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 148 tcatggccatggccatggcca 168 ||||||||||||||||||||| Sbjct: 130240 tcatggccatggccatggcca 130220
>gb|AY459337.1| Oryza sativa (japonica cultivar-group) clone CL003615.3 R2R3-MYB gene region Length = 42296 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 430 ccccacagcacgatgtacagccccgcgac 458 ||||||||||| ||||||||||| ||||| Sbjct: 30034 ccccacagcaccatgtacagcccggcgac 30062
>gb|AC124686.3| Mus musculus BAC clone RP24-422F20 from chromosome 10, complete sequence Length = 194018 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 149 catggccatggccatggccac 169 ||||||||||||||||||||| Sbjct: 113491 catggccatggccatggccac 113511
>gb|AC110882.13| Mus musculus chromosome 18, clone RP23-287A10, complete sequence Length = 203782 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 tctcatctttttgtacattag 139 ||||||||||||||||||||| Sbjct: 80475 tctcatctttttgtacattag 80455
>emb|Z11716.1|RNGLUR7 R.norvegicus mRNA for kainate receptor Length = 3593 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 143 cgtcatcatggccatggccatggcc 167 |||||||||| |||||||||||||| Sbjct: 890 cgtcatcatgcccatggccatggcc 866
>emb|AL731628.4|OSJN00282 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0088C09, complete sequence Length = 96079 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 424 gctttgccccacagcacgatgtaca 448 ||||||||||||||||| ||||||| Sbjct: 14589 gctttgccccacagcaccatgtaca 14565
>gb|BC008692.1| Homo sapiens protein tyrosine phosphatase, non-receptor type 11 (Noonan syndrome 1), mRNA (cDNA clone MGC:17206 IMAGE:3872007), complete cds Length = 1892 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 151 tggccatggccatggccacatgctc 175 |||||||||||||||| |||||||| Sbjct: 1776 tggccatggccatggcaacatgctc 1800
>emb|AL606657.4|OSJN00101 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034I13, complete sequence Length = 123480 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 149 catggccatggccatggccac 169 ||||||||||||||||||||| Sbjct: 54601 catggccatggccatggccac 54621
>emb|AJ293306.1|BCE293306 Burkholderia cepacia alkB gene, minD gene (partial), minC gene and serS gene Length = 6237 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 389 cgcgctccgccgccctccggg 409 ||||||||||||||||||||| Sbjct: 5434 cgcgctccgccgccctccggg 5454
>dbj|AK165611.1| Mus musculus bone marrow stroma cell CRL-2028 SR-4987 cDNA, RIKEN full-length enriched library, clone:G430061H20 product:methionine aminopeptidase 2, full insert sequence Length = 3165 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 149 catggccatggccatggccac 169 ||||||||||||||||||||| Sbjct: 2612 catggccatggccatggccac 2592
>dbj|AK080746.1| Mus musculus adult retina cDNA, RIKEN full-length enriched library, clone:A930035J23 product:unclassifiable, full insert sequence Length = 1317 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 149 catggccatggccatggccac 169 ||||||||||||||||||||| Sbjct: 1015 catggccatggccatggccac 995
>dbj|AK041893.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630044P20 product:hypothetical protein, full insert sequence Length = 2636 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 149 catggccatggccatggccac 169 ||||||||||||||||||||| Sbjct: 1475 catggccatggccatggccac 1495
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 149 catggccatggccatggccac 169 ||||||||||||||||||||| Sbjct: 32437800 catggccatggccatggccac 32437820 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 424 gctttgccccacagcacgatgtaca 448 ||||||||||||||||| ||||||| Sbjct: 20911366 gctttgccccacagcaccatgtaca 20911342
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 148 tcatggccatggccatggcca 168 ||||||||||||||||||||| Sbjct: 34822482 tcatggccatggccatggcca 34822502
>gb|AC004216.1| Homo sapiens 12 PAC RPCI1-66E7 (Roswell Park Cancer Institute Human PAC library) complete sequence Length = 181098 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 151 tggccatggccatggccacatgctc 175 |||||||||||||||| |||||||| Sbjct: 141381 tggccatggccatggcaacatgctc 141357
>dbj|AP003140.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0025P13 Length = 133242 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 430 ccccacagcacgatgtacagccccgcgac 458 ||||||||||| ||||||||||| ||||| Sbjct: 99330 ccccacagcaccatgtacagcccggcgac 99302 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 427 ttgccccacagcacgatgtacagccccgcgac 458 |||||||| |||||| ||||||||||| |||| Sbjct: 66631 ttgccccagagcacggtgtacagccccacgac 66600
>dbj|AP002883.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0487H02 Length = 145491 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 430 ccccacagcacgatgtacagccccgcgac 458 ||||||||||| ||||||||||| ||||| Sbjct: 15156 ccccacagcaccatgtacagcccggcgac 15128
>dbj|AK106554.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-G11, full insert sequence Length = 1567 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 430 ccccacagcacgatgtacagccccgcgac 458 ||||||||||| ||||||||||| ||||| Sbjct: 1167 ccccacagcaccatgtacagcccggcgac 1139
>dbj|AK099964.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013126L24, full insert sequence Length = 1776 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 424 gctttgccccacagcacgatgtaca 448 ||||||||||||||||| ||||||| Sbjct: 1488 gctttgccccacagcaccatgtaca 1464
>dbj|AK066906.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091P09, full insert sequence Length = 2651 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 149 catggccatggccatggccac 169 ||||||||||||||||||||| Sbjct: 527 catggccatggccatggccac 547
>gb|M83552.1|RATGLUR7A Rattus norvegicus glutamate receptor subunit kainate subtype (GluR7) mRNA, complete cds Length = 3200 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 143 cgtcatcatggccatggccatggcc 167 |||||||||| |||||||||||||| Sbjct: 663 cgtcatcatgcccatggccatggcc 639
>gb|AF027331.1|AF027331 Rattus norvegicus kainate receptor GluR7b mRNA, complete cds Length = 3633 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 143 cgtcatcatggccatggccatggcc 167 |||||||||| |||||||||||||| Sbjct: 890 cgtcatcatgcccatggccatggcc 866
>ref|NM_019648.3| Mus musculus methionine aminopeptidase 2 (Metap2), mRNA Length = 4990 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 149 catggccatggccatggccac 169 ||||||||||||||||||||| Sbjct: 4431 catggccatggccatggccac 4411
>emb|AL607090.12| Mouse DNA sequence from clone RP23-273I17 on chromosome 4, complete sequence Length = 153056 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 143 cgtcatcatggccatggccatggcc 167 |||||||||| |||||||||||||| Sbjct: 55540 cgtcatcatgcccatggccatggcc 55516
>emb|AL928593.4| Mouse DNA sequence from clone RP23-100E9 on chromosome 2, complete sequence Length = 195840 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 149 catggccatggccatggccac 169 ||||||||||||||||||||| Sbjct: 152574 catggccatggccatggccac 152594
>emb|AL157690.7|CNS01RG2 Human chromosome 14 DNA sequence BAC R-565E24 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 163398 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 118 atctcatctttttgtacatta 138 ||||||||||||||||||||| Sbjct: 130594 atctcatctttttgtacatta 130574
>gb|DQ159935.1| Macaca fascicularis GluR7 (GRIK3) mRNA, complete cds Length = 3597 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 144 gtcatcatggccatggccatggcc 167 ||||||||| |||||||||||||| Sbjct: 853 gtcatcatgcccatggccatggcc 830
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 tcatggccatggccatggcc 167 |||||||||||||||||||| Sbjct: 3599980 tcatggccatggccatggcc 3599999
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 catggccatggccatggcca 168 |||||||||||||||||||| Sbjct: 2983291 catggccatggccatggcca 2983272 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 catggccatggccatggcca 168 |||||||||||||||||||| Sbjct: 2983270 catggccatggccatggcca 2983289
>ref|XM_524666.1| PREDICTED: Pan troglodytes similar to glutamate receptor 7 precursor; excitatory amino acid receptor 5 (LOC469281), mRNA Length = 3735 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 144 gtcatcatggccatggccatggcc 167 ||||||||| |||||||||||||| Sbjct: 788 gtcatcatgcccatggccatggcc 765
>ref|NM_183654.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1077 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 427 ttgccccacagcacgatgtacagccccgcgac 458 |||||||| |||||| ||||||||||| |||| Sbjct: 923 ttgccccagagcacggtgtacagccccacgac 892
>gb|AC120004.14| Mus musculus chromosome 5, clone RP24-150N15, complete sequence Length = 199229 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 146 catcatggccatggccatggccac 169 ||||||| |||||||||||||||| Sbjct: 36799 catcatgaccatggccatggccac 36822
>gb|AC147377.4| Mus musculus BAC clone RP23-156K23 from chromosome 5, complete sequence Length = 236084 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 146 catcatggccatggccatggccac 169 ||||||| |||||||||||||||| Sbjct: 53896 catcatgaccatggccatggccac 53873
>ref|XM_611666.2| PREDICTED: Bos taurus similar to glutamate receptor 7 precursor (LOC532553), mRNA Length = 2817 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 144 gtcatcatggccatggccatggcc 167 ||||||||| |||||||||||||| Sbjct: 812 gtcatcatgcccatggccatggcc 789
>ref|NM_000831.2| Homo sapiens glutamate receptor, ionotropic, kainate 3 (GRIK3), mRNA Length = 3733 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 144 gtcatcatggccatggccatggcc 167 ||||||||| |||||||||||||| Sbjct: 890 gtcatcatgcccatggccatggcc 867
>gb|AC125186.6| Mus musculus BAC clone RP23-302C16 from chromosome 1, complete sequence Length = 192042 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 tggccatggccatggccaca 170 |||||||||||||||||||| Sbjct: 152471 tggccatggccatggccaca 152490
>emb|AJ249210.1|HSA249210 Homo sapiens mRNA for glutamate/kainate receptor subtype GluR7 (GRIK3 gene) Length = 2973 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 144 gtcatcatggccatggccatggcc 167 ||||||||| |||||||||||||| Sbjct: 776 gtcatcatgcccatggccatggcc 753
>ref|XM_845238.1| PREDICTED: Canis familiaris similar to glutamate receptor 7 precursor (LOC608269), mRNA Length = 2810 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 144 gtcatcatggccatggccatggcc 167 ||||||||| |||||||||||||| Sbjct: 805 gtcatcatgcccatggccatggcc 782
>gb|AC122466.2| Mus musculus BAC clone RP24-304N8 from chromosome 5, complete sequence Length = 196687 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 146 catcatggccatggccatggccac 169 ||||||| |||||||||||||||| Sbjct: 32478 catcatgaccatggccatggccac 32501
>ref|XM_815074.1| Trypanosoma cruzi strain CL Brener ubiquitin hydrolase (Tc00.1047053509429.250) partial mRNA Length = 3408 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 catggccatggccatggcca 168 |||||||||||||||||||| Sbjct: 2164 catggccatggccatggcca 2145
>emb|AL157392.18| Human DNA sequence from clone RP11-295P9 on chromosome 10 Contains the PRPF18 gene for PRP18 pre-mRNA processing factor 18 homolog (yeast), a ribosomal protein L6 (RPL6)(TAXREB107) pseudogene, two novel genes, the 5' end of a novel gene, the 3' end of the gene for a novel protein (FLJ10210) and two CpG islands, complete sequence Length = 178908 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 tatagagctcatatataaga 245 |||||||||||||||||||| Sbjct: 10460 tatagagctcatatataaga 10479
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 ccagatcatcggcgcgctcc 396 |||||||||||||||||||| Sbjct: 319467 ccagatcatcggcgcgctcc 319448
>gb|AC160559.5| Mus musculus BAC clone RP24-404N24 from chromosome 10, complete sequence Length = 157670 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 gctcatcttaaatttgtggg 94 |||||||||||||||||||| Sbjct: 49758 gctcatcttaaatttgtggg 49739
>emb|AL031227.1|DMC66A1 Drosophila melanogaster cosmid 66A1 Length = 34127 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 catcatggccatggccatgg 165 |||||||||||||||||||| Sbjct: 13972 catcatggccatggccatgg 13953
>emb|AJ299451.1|HSA299451 Homo sapiens mRNA for glutamate receptor 7 (GRIK3 gene) Length = 2619 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 144 gtcatcatggccatggccatggcc 167 ||||||||| |||||||||||||| Sbjct: 755 gtcatcatgcccatggccatggcc 732
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 tcatggccatggccatggcc 167 |||||||||||||||||||| Sbjct: 4533668 tcatggccatggccatggcc 4533687
>gb|AC117945.2| Homo sapiens chromosome 1 clone RP4-614N24, complete sequence Length = 160557 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 144 gtcatcatggccatggccatggcc 167 ||||||||| |||||||||||||| Sbjct: 106206 gtcatcatgcccatggccatggcc 106229
>ref|NM_204740.1| Gallus gallus chondroitin sulfate proteoglycan 3 (neurocan) (CSPG3), mRNA Length = 4634 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 157 tggccatggccacatgctccaccagcac 184 |||||||| || |||||||||||||||| Sbjct: 1223 tggccatgtcctcatgctccaccagcac 1196
>gb|AC023747.4| Drosophila melanogaster X BAC RP98-38L1 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 167097 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 catcatggccatggccatgg 165 |||||||||||||||||||| Sbjct: 39485 catcatggccatggccatgg 39466
>gb|AC090127.11| Mus musculus chromosome 6, clone RP23-128D23, complete sequence Length = 212404 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 catggccatggccatggcca 168 |||||||||||||||||||| Sbjct: 147197 catggccatggccatggcca 147178 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 catggccatggccatggcca 168 |||||||||||||||||||| Sbjct: 147176 catggccatggccatggcca 147195
>ref|NM_057326.4| Drosophila melanogaster pebbled CG12212-RA, transcript variant A (peb), mRNA Length = 6458 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 catcatggccatggccatgg 165 |||||||||||||||||||| Sbjct: 3922 catcatggccatggccatgg 3941
>ref|NM_001014722.1| Drosophila melanogaster pebbled CG12212-RB, transcript variant B (peb), mRNA Length = 6453 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 catcatggccatggccatgg 165 |||||||||||||||||||| Sbjct: 3917 catcatggccatggccatgg 3936
>gb|AC093874.3| Homo sapiens BAC clone RP11-624O16 from 4, complete sequence Length = 158245 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 catggccatggccatggcca 168 |||||||||||||||||||| Sbjct: 129940 catggccatggccatggcca 129921 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 catggccatggccatggcca 168 |||||||||||||||||||| Sbjct: 129919 catggccatggccatggcca 129938
>gb|AC098864.3| Homo sapiens BAC clone RP11-359L10 from 4, complete sequence Length = 216280 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 actctccctcgaaaaacaac 210 |||||||||||||||||||| Sbjct: 114430 actctccctcgaaaaacaac 114411
>gb|AC099011.1| Drosophila melanogaster, chromosome 2L, region 24C-24D, BAC clone BACR22M14, complete sequence Length = 173380 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 421 cctgctttgccccacagcacgatg 444 ||||||||||||||||| |||||| Sbjct: 14321 cctgctttgccccacaggacgatg 14298
>gb|AY058335.1| Drosophila melanogaster GH10905 full length cDNA Length = 6318 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 catcatggccatggccatgg 165 |||||||||||||||||||| Sbjct: 3886 catcatggccatggccatgg 3905
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 451 cccgcgaccacggcgaacgc 470 |||||||||||||||||||| Sbjct: 2826069 cccgcgaccacggcgaacgc 2826088
>gb|AC092240.1|AC092240 Drosophila melanogaster, chromosome 2L, region 24E-24F, BAC clone BACR06H02, complete sequence Length = 187707 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 421 cctgctttgccccacagcacgatg 444 ||||||||||||||||| |||||| Sbjct: 175136 cctgctttgccccacaggacgatg 175113
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 catggccatggccatggcca 168 |||||||||||||||||||| Sbjct: 19890028 catggccatggccatggcca 19890009
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 435 cagcacgatgtacagccccg 454 |||||||||||||||||||| Sbjct: 6602095 cagcacgatgtacagccccg 6602114
>gb|AF116856.2|AF116856 Gallus gallus neurocan core protein precursor, mRNA, complete cds Length = 4634 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 157 tggccatggccacatgctccaccagcac 184 |||||||| || |||||||||||||||| Sbjct: 1223 tggccatgtcctcatgctccaccagcac 1196
>dbj|AP003569.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0425F05 Length = 162858 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 435 cagcacgatgtacagccccg 454 |||||||||||||||||||| Sbjct: 36221 cagcacgatgtacagccccg 36240
>dbj|AP003513.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0690H04 Length = 137319 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 435 cagcacgatgtacagccccg 454 |||||||||||||||||||| Sbjct: 118471 cagcacgatgtacagccccg 118490
>dbj|D85192.1| Arabidopsis thaliana mRNA for transmembrane protein, complete cds Length = 1024 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 242 aagaccatgagctgaggtcaccgg 265 |||||||||||||||| ||||||| Sbjct: 188 aagaccatgagctgagctcaccgg 165
>dbj|AK106512.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-107-A06, full insert sequence Length = 1462 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 catggccatggccatggcca 168 |||||||||||||||||||| Sbjct: 552 catggccatggccatggcca 533
>dbj|AK103386.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033127H23, full insert sequence Length = 2140 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 catggccatggccatggcca 168 |||||||||||||||||||| Sbjct: 1242 catggccatggccatggcca 1223
>gb|AE003578.3| Drosophila melanogaster chromosome 2L, section 13 of 83 of the complete sequence Length = 295211 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 421 cctgctttgccccacagcacgatg 444 ||||||||||||||||| |||||| Sbjct: 144886 cctgctttgccccacaggacgatg 144863
>gb|AE003431.5| Drosophila melanogaster chromosome X, section 15 of 74 of the complete sequence Length = 310993 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 catcatggccatggccatgg 165 |||||||||||||||||||| Sbjct: 234214 catcatggccatggccatgg 234233
>dbj|AP001122.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-744N12, complete sequence Length = 217393 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 tgtgggactcaacaacattt 108 |||||||||||||||||||| Sbjct: 165947 tgtgggactcaacaacattt 165928
>gb|AC116406.13| Mus musculus chromosome 3, clone RP23-427K12, complete sequence Length = 175075 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 gccatggccacatgctccac 178 |||||||||||||||||||| Sbjct: 38385 gccatggccacatgctccac 38404
>gb|AC005732.1|AC005732 Drosophila melanogaster DNA sequence (P1s DS03998 (D223), DS01595 (D161), and DS00065 (D263)), complete sequence Length = 127039 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 421 cctgctttgccccacagcacgatg 444 ||||||||||||||||| |||||| Sbjct: 39785 cctgctttgccccacaggacgatg 39808
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 catggccatggccatggcca 168 |||||||||||||||||||| Sbjct: 19816242 catggccatggccatggcca 19816223
>emb|AL731888.5|CNS08C8S Oryza sativa chromosome 12, . BAC OJ1118_C12 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 165433 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 catggccatggccatggcca 168 |||||||||||||||||||| Sbjct: 137232 catggccatggccatggcca 137251
>gb|U86010.1|DMU86010 Drosophila zinc-finger nuclear protein hindsight, complete cds Length = 6188 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 catcatggccatggccatgg 165 |||||||||||||||||||| Sbjct: 3644 catcatggccatggccatgg 3663
>gb|U16127.1|HSU16127 Human glutamate/kainate receptor subunit (EAA5) mRNA, complete cds Length = 3614 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 144 gtcatcatggccatggccatggcc 167 ||||||||| |||||||||||||| Sbjct: 773 gtcatcatgcccatggccatggcc 750
>gb|AC168058.4| Mus musculus BAC clone RP24-134D11 from chromosome 10, complete sequence Length = 199406 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 gctcatcttaaatttgtggg 94 |||||||||||||||||||| Sbjct: 65935 gctcatcttaaatttgtggg 65954
>emb|AL831754.2| Mouse DNA sequence from clone RP23-295A1 on chromosome 4, complete sequence Length = 189029 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 catggccatggccatggcca 168 |||||||||||||||||||| Sbjct: 172978 catggccatggccatggcca 172959
>emb|AL807233.10| Mouse DNA sequence from clone RP23-174O19 on chromosome X, complete sequence Length = 195054 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 catggccatggccatggcca 168 |||||||||||||||||||| Sbjct: 88412 catggccatggccatggcca 88431
>emb|Y17293.1|HSY17293 Homo sapiens FLI-1 gene, partial Length = 66352 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 tgtgggactcaacaacattt 108 |||||||||||||||||||| Sbjct: 55512 tgtgggactcaacaacattt 55493
>gb|M25383.1|HUMIGHHSG4 Human mutant germline Ig H-chain DNA with a deletion of IgG1, IgG2, IgG4 and IgA1, clone pBR0.9cos4 Length = 892 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 tggccatggccatggccaca 170 |||||||||||||||||||| Sbjct: 400 tggccatggccatggccaca 419 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,788,964 Number of Sequences: 3902068 Number of extensions: 3788964 Number of successful extensions: 144327 Number of sequences better than 10.0: 101 Number of HSP's better than 10.0 without gapping: 103 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 143490 Number of HSP's gapped (non-prelim): 806 length of query: 493 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 471 effective length of database: 17,147,199,772 effective search space: 8076331092612 effective search space used: 8076331092612 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
