ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart35f08 |
|---|---|
| Clone Library Name | barley_pub |
>VSPA_SOYBN (P15490) Stem 28 kDa glycoprotein precursor (Vegetative storage| protein A) Length = 254 Score = 106 bits (264), Expect = 4e-23 Identities = 55/102 (53%), Positives = 72/102 (70%), Gaps = 3/102 (2%) Frame = -1 Query: 519 YNKLRSIGVKPVFLTGRTEDQRAITVTNLRRQGISGWMNLLLKQPGFKG--SAVTYKSGE 346 YNKL S+G K +FL+GRT D++A+T NL++ G W L+LK P +AV+YK+ Sbjct: 152 YNKLVSLGFKIIFLSGRTLDKQAVTEANLKKAGYHTWEKLILKDPQDPSTPNAVSYKTAA 211 Query: 345 RQKLQDAGYVIVGNIGDQWSDILGAPEG-ARTFKLPDPMYYI 223 R+KL GY IVG IGDQWSD+LG G +RTFKLP+P+YYI Sbjct: 212 REKLIRQGYNIVGIIGDQWSDLLGGHRGESRTFKLPNPLYYI 253
>VSPB_SOYBN (P10743) Stem 31 kDa glycoprotein precursor (Vegetative storage| protein B) Length = 254 Score = 103 bits (256), Expect = 4e-22 Identities = 55/101 (54%), Positives = 69/101 (68%), Gaps = 2/101 (1%) Frame = -1 Query: 519 YNKLRSIGVKPVFLTGRTEDQRAITVTNLRRQGISGWMNLLLKQPG-FKGSAVTYKSGER 343 YNKL S+G K VFL+GR D+ A+T NL++ G W L+LK P +A++YKS R Sbjct: 153 YNKLLSLGFKIVFLSGRYLDKMAVTEANLKKAGFHTWEQLILKDPHLITPNALSYKSAMR 212 Query: 342 QKLQDAGYVIVGNIGDQWSDILGAPEG-ARTFKLPDPMYYI 223 + L GY IVG IGDQWSD+LG G +RTFKLP+PMYYI Sbjct: 213 ENLLRQGYRIVGIIGDQWSDLLGDHRGESRTFKLPNPMYYI 253
>S25K_SOYBN (P10742) Stem 31 kDa glycoprotein precursor (Vegetative storage| protein VSP25) (Fragment) Length = 291 Score = 98.6 bits (244), Expect = 9e-21 Identities = 52/98 (53%), Positives = 68/98 (69%), Gaps = 3/98 (3%) Frame = -1 Query: 519 YNKLRSIGVKPVFLTGRTEDQRAITVTNLRRQGISGWMNLLLKQPGFKG--SAVTYKSGE 346 YNKL S+G K +FL+GRT D++A+T NL++ G W L+LK P +AV+YK+ Sbjct: 149 YNKLVSLGFKIIFLSGRTLDKQAVTEANLKKAGYHTWEKLILKDPQDPSTPNAVSYKTAA 208 Query: 345 RQKLQDAGYVIVGNIGDQWSDILGAPEG-ARTFKLPDP 235 R+KL GY IVG IGDQWSD+LG G +RTFKLP+P Sbjct: 209 REKLIRQGYNIVGIIGDQWSDLLGGHRGESRTFKLPNP 246
>PPA1_LYCES (P27061) Acid phosphatase 1 precursor (EC 3.1.3.2) (Apase-1(1))| Length = 255 Score = 97.1 bits (240), Expect = 3e-20 Identities = 48/102 (47%), Positives = 65/102 (63%), Gaps = 1/102 (0%) Frame = -1 Query: 525 RLYNKLRSIGVKPVFLTGRTEDQRAITVTNLRRQGISGWMNLLLKQPGFKG-SAVTYKSG 349 +LY ++ +G K LTGR+E R++TV NL G W L+L+ G +A TYKS Sbjct: 153 KLYQEVLKLGFKVFLLTGRSERHRSVTVENLMNAGFHDWHKLILRGSDDHGKTATTYKSE 212 Query: 348 ERQKLQDAGYVIVGNIGDQWSDILGAPEGARTFKLPDPMYYI 223 R + + G+ IVGN GDQWSD+LG+ R+FKLP+PMYYI Sbjct: 213 RRNAMVEEGFRIVGNSGDQWSDLLGSSMSYRSFKLPNPMYYI 254
>VSP1_ARATH (O49195) Vegetative storage protein 1 precursor| Length = 270 Score = 92.0 bits (227), Expect = 9e-19 Identities = 44/100 (44%), Positives = 64/100 (64%) Frame = -1 Query: 522 LYNKLRSIGVKPVFLTGRTEDQRAITVTNLRRQGISGWMNLLLKQPGFKGSAVTYKSGER 343 LY L +G++P+ ++ R + IT+ NL+ G++ W +L+LK G K + V YKS R Sbjct: 170 LYENLLELGIEPIIISDRWKKLSEITIENLKAVGVTKWKHLILKPNGSKLTQVVYKSKVR 229 Query: 342 QKLQDAGYVIVGNIGDQWSDILGAPEGARTFKLPDPMYYI 223 L GY IVGNIGDQW+D++ G R FKLP+P+YY+ Sbjct: 230 NSLVKKGYNIVGNIGDQWADLVEDTPG-RVFKLPNPLYYV 268
>VSP2_ARATH (O82122) Vegetative storage protein 2 precursor| Length = 265 Score = 87.0 bits (214), Expect = 3e-17 Identities = 42/100 (42%), Positives = 63/100 (63%) Frame = -1 Query: 522 LYNKLRSIGVKPVFLTGRTEDQRAITVTNLRRQGISGWMNLLLKQPGFKGSAVTYKSGER 343 LY + +G++P+ L+ R + + +T+ NL G++ W +L+LK G V YKS R Sbjct: 165 LYQNIIELGIEPIILSDRWKLWKNVTLDNLEAAGVTYWKHLILKPNGSNLRQVVYKSKVR 224 Query: 342 QKLQDAGYVIVGNIGDQWSDILGAPEGARTFKLPDPMYYI 223 + L GY IVGNIGDQW+D++ G R FKLP+P+YY+ Sbjct: 225 KSLVKKGYNIVGNIGDQWADLVEDTPG-RVFKLPNPLYYV 263
>DLDH_SHIFL (P0A9P3) Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (E3 component of| pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (Glycine cleavage system L protein) Length = 473 Score = 31.6 bits (70), Expect = 1.4 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = +1 Query: 166 ELIREINGSMPGRARGGLADVVHGVGQLEGAGTL 267 ++I ++ G + G A+G VV+G+G+ GA TL Sbjct: 91 KVINQLTGGLAGMAKGRKVKVVNGLGKFTGANTL 124
>DLDH_ECOLI (P0A9P0) Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (E3 component of| pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (Glycine cleavage system L protein) Length = 473 Score = 31.6 bits (70), Expect = 1.4 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = +1 Query: 166 ELIREINGSMPGRARGGLADVVHGVGQLEGAGTL 267 ++I ++ G + G A+G VV+G+G+ GA TL Sbjct: 91 KVINQLTGGLAGMAKGRKVKVVNGLGKFTGANTL 124
>DLDH_ECOL6 (P0A9P1) Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (E3 component of| pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (Glycine cleavage system L protein) Length = 473 Score = 31.6 bits (70), Expect = 1.4 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = +1 Query: 166 ELIREINGSMPGRARGGLADVVHGVGQLEGAGTL 267 ++I ++ G + G A+G VV+G+G+ GA TL Sbjct: 91 KVINQLTGGLAGMAKGRKVKVVNGLGKFTGANTL 124
>DLDH_ECO57 (P0A9P2) Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (E3 component of| pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (Glycine cleavage system L protein) Length = 473 Score = 31.6 bits (70), Expect = 1.4 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = +1 Query: 166 ELIREINGSMPGRARGGLADVVHGVGQLEGAGTL 267 ++I ++ G + G A+G VV+G+G+ GA TL Sbjct: 91 KVINQLTGGLAGMAKGRKVKVVNGLGKFTGANTL 124
>AAD6_YEAST (P43547) Putative aryl-alcohol dehydrogenase AAD6 (EC 1.1.1.-)| Length = 212 Score = 30.8 bits (68), Expect = 2.4 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = -1 Query: 306 NIGDQWSDILGAPEGARTFKLPDPMY 229 +IGD WS+ILG+ R F+L D Y Sbjct: 38 SIGDAWSEILGSMSKERAFELLDAFY 63
>POLG_CXB3W (Q66282) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat| protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein P2A); Core protein P2B; Core protein P2C; Core protein P3A; Genome Length = 2184 Score = 30.4 bits (67), Expect = 3.1 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Frame = +2 Query: 305 LPTMTYPASCSFCLSPDL*VTAEPLNPGCFSKRFIHPE--IPWRRRLVTVMALWSSVRPV 478 LPTM P SC F S D +P + + PE IP + + +A SV PV Sbjct: 333 LPTMNTPGSCQFLTSDDF------QSPSAMPQYDVTPEMRIPGEVKNLMEIAEVDSVVPV 386 Query: 479 RNTG 490 +N G Sbjct: 387 QNVG 390
>POLG_CXB3N (P03313) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat| protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein P2A); Core protein P2B; Core protein P2C; Core protein P3A; Genome Length = 2184 Score = 30.4 bits (67), Expect = 3.1 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Frame = +2 Query: 305 LPTMTYPASCSFCLSPDL*VTAEPLNPGCFSKRFIHPE--IPWRRRLVTVMALWSSVRPV 478 LPTM P SC F S D +P + + PE IP + + +A SV PV Sbjct: 333 LPTMNTPGSCQFLTSDDF------QSPSAMPQYDVTPEMRIPGEVKNLMEIAEVDSVVPV 386 Query: 479 RNTG 490 +N G Sbjct: 387 QNVG 390
>PROL4_HUMAN (Q16378) Proline-rich protein 4 precursor (Lacrimal proline-rich| protein) (Nasopharyngeal carcinoma-associated proline-rich protein 4) Length = 134 Score = 30.4 bits (67), Expect = 3.1 Identities = 10/12 (83%), Positives = 10/12 (83%) Frame = -3 Query: 460 PEGHHRHQPPPP 425 P GHHRH PPPP Sbjct: 76 PGGHHRHPPPPP 87
>URE23_PSEU2 (Q4ZUD1) Urease gamma/beta subunit (EC 3.5.1.5) (Urea| amidohydrolase gamma/beta subunit) Length = 231 Score = 30.4 bits (67), Expect = 3.1 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Frame = +1 Query: 307 TDDDIPGVLQLLPLAGLVG-HRRALEPGLLQQEVHPPRDPLAAEVGDGDGPLVLSPAGEE 483 TDD +PGV LLP+ + G + + Q + P + PLA G+ +L+P G+ Sbjct: 66 TDDVMPGVADLLPVLQVEGTFPDGTKLVTVHQPIRPGQLPLAVMPTPGE---ILAPDGDI 122 Query: 484 HRLDADR 504 H L+ DR Sbjct: 123 H-LNGDR 128
>HRG_RABIT (Q28640) Histidine-rich glycoprotein precursor| (Histidine-proline-rich glycoprotein) (HPRG) (Fragment) Length = 526 Score = 30.0 bits (66), Expect = 4.1 Identities = 13/26 (50%), Positives = 14/26 (53%) Frame = -3 Query: 499 RRQAGVPHRPD*GPEGHHRHQPPPPG 422 R + HRP P GHH H PPP G Sbjct: 319 RISVNIIHRPP--PHGHHPHGPPPHG 342 Score = 29.3 bits (64), Expect = 7.0 Identities = 12/20 (60%), Positives = 12/20 (60%) Frame = -3 Query: 481 PHRPD*GPEGHHRHQPPPPG 422 PH P P GHH H PPP G Sbjct: 335 PHGPP--PHGHHPHGPPPHG 352
>NLGN1_RAT (Q62765) Neuroligin-1 precursor (Neuroligin I)| Length = 843 Score = 30.0 bits (66), Expect = 4.1 Identities = 16/40 (40%), Positives = 20/40 (50%) Frame = -3 Query: 487 GVPHRPD*GPEGHHRHQPPPPGDLWVDEPLAEATRVQGLC 368 GVP+ P G HR QPP P W D + AT+ +C Sbjct: 82 GVPYAAP--PTGEHRFQPPEPPSPWSD--IRNATQFAPVC 117
>NLGN1_MOUSE (Q99K10) Neuroligin-1 precursor| Length = 843 Score = 30.0 bits (66), Expect = 4.1 Identities = 16/40 (40%), Positives = 20/40 (50%) Frame = -3 Query: 487 GVPHRPD*GPEGHHRHQPPPPGDLWVDEPLAEATRVQGLC 368 GVP+ P G HR QPP P W D + AT+ +C Sbjct: 82 GVPYAAP--PTGEHRFQPPEPPSPWSD--IRNATQFAPVC 117
>FLGH_BRUSU (Q8FXC2) Flagellar L-ring protein precursor (Basal body L-ring| protein) Length = 238 Score = 30.0 bits (66), Expect = 4.1 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%) Frame = +1 Query: 190 SMPGRARGGLADV---VHGVGQLEGAGTLWRAEDVAPLVADVTDDDIP 324 S+ G A GG D H + +G GT+ R+ED+ +A + D +P Sbjct: 116 SITGAAAGGDMDASINTHSDSKSKGKGTIERSEDIRLQIAAIVTDTLP 163
>FLGH_BRUME (Q8YB19) Flagellar L-ring protein precursor (Basal body L-ring| protein) Length = 238 Score = 30.0 bits (66), Expect = 4.1 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%) Frame = +1 Query: 190 SMPGRARGGLADV---VHGVGQLEGAGTLWRAEDVAPLVADVTDDDIP 324 S+ G A GG D H + +G GT+ R+ED+ +A + D +P Sbjct: 116 SITGAAAGGDMDASVNTHSDSKSKGKGTIERSEDIRLQIAAIVTDTLP 163
>FLGH_BRUAB (Q579T6) Flagellar L-ring protein precursor (Basal body L-ring| protein) Length = 238 Score = 30.0 bits (66), Expect = 4.1 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%) Frame = +1 Query: 190 SMPGRARGGLADV---VHGVGQLEGAGTLWRAEDVAPLVADVTDDDIP 324 S+ G A GG D H + +G GT+ R+ED+ +A + D +P Sbjct: 116 SITGAAAGGDMDASVNTHSDSKSKGKGTIERSEDIRLQIAAIVTDTLP 163
>YGFT_ECOLI (Q46820) Hypothetical protein ygfT| Length = 639 Score = 30.0 bits (66), Expect = 4.1 Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 3/54 (5%) Frame = +1 Query: 298 ADVTDDDIPGVLQLLPLAGLVGHRRALEPGLLQQEVHPPRDPLAAEV---GDGD 450 AD+ +D PGV+Q LP L H R L GL + E +P D V G GD Sbjct: 411 ADLPHEDAPGVIQALPF--LTAHTRQL-MGLPESEEYPLTDVEGKRVVVLGGGD 461
>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa DNA-pairing protein) (hPOMp Length = 707 Score = 29.6 bits (65), Expect = 5.3 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = -3 Query: 481 PHRPD*GPEGHHRHQPPPP 425 PH+P P+ H + QPPPP Sbjct: 84 PHQPPPHPQPHQQQQPPPP 102
>STNA_DROME (Q24211) Protein stoned-A (StonedA) (Stn-A)| Length = 850 Score = 29.6 bits (65), Expect = 5.3 Identities = 15/42 (35%), Positives = 24/42 (57%) Frame = -1 Query: 513 KLRSIGVKPVFLTGRTEDQRAITVTNLRRQGISGWMNLLLKQ 388 KL S+G L+GR + + A+ + N +R+ G NLLL + Sbjct: 246 KLVSLGAAVEVLSGRVDREHAVALANPKRKLRKGIQNLLLSE 287
>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1| Length = 888 Score = 29.6 bits (65), Expect = 5.3 Identities = 18/47 (38%), Positives = 23/47 (48%) Frame = -2 Query: 476 PAGLRTRGPSPSPTSAARGSLGG*TSC*SNPGSRALR*PTSPARGRS 336 P +T+ +PSP SA R S S P + + P SPAR RS Sbjct: 721 PEPKKTKASTPSPRSARRVSSSRSASGSPEPAPKKHQGPPSPARSRS 767
>PYRD_SYNP6 (Q5N2Q8) Dihydroorotate dehydrogenase (EC 1.3.3.1) (Dihydroorotate| oxidase) (DHOdehase) (DHODase) (DHOD) Length = 378 Score = 29.6 bits (65), Expect = 5.3 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 4/71 (5%) Frame = +1 Query: 292 LVADVTDDDIPGVLQLLP---LAGLVGHRRALEPGLLQQEVHP-PRDPLAAEVGDGDGPL 459 + D+ D+++ + L LAG++ ++ LL E P R+PLA E G G Sbjct: 230 IAPDLVDEEVVAIAHLAQRQQLAGIIATNTTIDKSLLSVEHLPGRREPLATEAGGISGAP 289 Query: 460 VLSPAGEEHRL 492 + S + E RL Sbjct: 290 LRSRSTEVIRL 300
>VAT1_HUMAN (Q99536) Synaptic vesicle membrane protein VAT-1 homolog (EC| 1.-.-.-) Length = 393 Score = 29.6 bits (65), Expect = 5.3 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%) Frame = -1 Query: 435 LRRQGISGWMNLLLKQPGFKGSAVTYKSGERQKLQDAG-YVIVGNIGDQWSDILGAPEGA 259 + RQG+ + L PG +G+ V GE + AG V+V N W + + P Sbjct: 94 MARQGLYDRLPPLPVTPGMEGAGVVIAVGEGVSDRKAGDRVMVLNRSGMWQEEVTVP-SV 152 Query: 258 RTFKLPDPMYY 226 +TF +P+ M + Sbjct: 153 QTFLIPEAMTF 163
>GOGA5_ARATH (Q8S8N9) Golgin-84| Length = 707 Score = 29.3 bits (64), Expect = 7.0 Identities = 16/49 (32%), Positives = 26/49 (53%) Frame = +1 Query: 382 PGLLQQEVHPPRDPLAAEVGDGDGPLVLSPAGEEHRLDADRAQLVVQPL 528 PG+ Q EV P + ++ + GP++L+ E H DAD ++ PL Sbjct: 73 PGVSQSEVPPSKSSVSTDETSSSGPVLLT--REIHPTDADVQSVLSLPL 119
>VPS4B_MOUSE (P46467) Vacuolar sorting protein 4b (SKD1 protein)| Length = 444 Score = 28.9 bits (63), Expect = 9.1 Identities = 16/59 (27%), Positives = 30/59 (50%) Frame = +2 Query: 341 CLSPDL*VTAEPLNPGCFSKRFIHPEIPWRRRLVTVMALWSSVRPVRNTGLTPIERSLL 517 C+ DL P +PG ++ ++P + L V+++W +R + +T T E+ LL Sbjct: 375 CIVNDLLTPCSPGDPGAIEMTWM--DVPGDKLLEPVVSMWDMLRSLSSTKPTVNEQDLL 431
>PRS23_HUMAN (O95084) Serine protease 23 precursor (EC 3.4.21.-) (Putative| secreted protein ZSIG13) Length = 383 Score = 28.9 bits (63), Expect = 9.1 Identities = 17/55 (30%), Positives = 26/55 (47%) Frame = -1 Query: 390 QPGFKGSAVTYKSGERQKLQDAGYVIVGNIGDQWSDILGAPEGARTFKLPDPMYY 226 QPG GS V + +RQ+ + +I G QW D+ G+P+ P+ Y Sbjct: 312 QPGASGSGVYVRMWKRQQQKWERKIIGIFSGHQWVDMNGSPQDFNVAVRITPLKY 366
>LEU3_SCHPO (P18869) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM| dehydrogenase) (IMDH) (3-IPM-DH) Length = 371 Score = 28.9 bits (63), Expect = 9.1 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 3/65 (4%) Frame = +1 Query: 292 LVADVTDDD---IPGVLQLLPLAGLVGHRRALEPGLLQQEVHPPRDPLAAEVGDGDGPLV 462 L D+ D+ IPG L LLP A L G G +++VH +P+ D G + Sbjct: 246 LFGDIISDEASVIPGSLGLLPSASLSG-----VVGKSEEKVHCLVEPIHGSAPDIAGKGI 300 Query: 463 LSPAG 477 ++P G Sbjct: 301 VNPVG 305
>FABG6_BRANA (P27582) 3-oxoacyl-[acyl-carrier-protein] reductase (EC 1.1.1.100)| (3-ketoacyl-acyl carrier protein reductase) (Fragments) Length = 201 Score = 28.9 bits (63), Expect = 9.1 Identities = 19/55 (34%), Positives = 29/55 (52%) Frame = -1 Query: 429 RQGISGWMNLLLKQPGFKGSAVTYKSGERQKLQDAGYVIVGNIGDQWSDILGAPE 265 R+G S +N+ + PGF S +T K GE + + G + +G G Q D+ G E Sbjct: 124 REGASRNINVNVVCPGFIASEMTAKLGEDMEKKILGTIPLGRYG-QPEDVAGLVE 177
>DLDH1_BACST (P11959) Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (E3 component of| pyruvate complex) (Dihydrolipoamide dehydrogenase) Length = 470 Score = 28.9 bits (63), Expect = 9.1 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%) Frame = -1 Query: 480 LTGRTEDQRAITVTNLRRQGISGWMNLLLK--QPGFKGSAVTYKSGERQKLQDAGYVIV 310 L+G + AI L+++G+ N L K + G VTY++ K DA YV+V Sbjct: 212 LSGFEKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLV 270 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,940,713 Number of Sequences: 219361 Number of extensions: 1579304 Number of successful extensions: 5406 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 5062 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5359 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4027872870 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
