ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart35f02 |
|---|---|
| Clone Library Name | barley_pub |
>RETO_ESCCA (P30986) Reticuline oxidase precursor (EC 1.21.3.3)| (Berberine-bridge-forming enzyme) (BBE) (Tetrahydroprotoberberine synthase) Length = 538 Score = 82.8 bits (203), Expect = 5e-16 Identities = 42/106 (39%), Positives = 64/106 (60%), Gaps = 9/106 (8%) Frame = -3 Query: 491 IQYVAFWTGNG----TDGPNWISGLYNFMEPFVSKNPRGAYVNYRDLDI-----GENTVV 339 ++Y+ W + T+ +W+ +Y FM+PFVSKNPR YVN+ DLD+ G TVV Sbjct: 416 VEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVV 475 Query: 338 GGVTSYETGKVWGESYFGANFQRLAVTKGKVDASDYFRNEQSVPPL 201 + E + WGESYF +N++RL K +D ++ F + QS+PP+ Sbjct: 476 N--NAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPPM 519
>RETO_PAPSO (P93479) Reticuline oxidase precursor (EC 1.21.3.3)| (Berberine-bridge-forming enzyme) (BBE) (Tetrahydroprotoberberine synthase) Length = 535 Score = 76.6 bits (187), Expect = 3e-14 Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 3/85 (3%) Frame = -3 Query: 443 WISGLYNFMEPFVSKNPRGAYVNYRDLDIGE---NTVVGGVTSYETGKVWGESYFGANFQ 273 W++ Y+++EPFVSK PR YVN+ DLDIG + E + WGE YF +N++ Sbjct: 440 WLAKFYDYLEPFVSKEPRVGYVNHIDLDIGGIDWRNKSSTTNAVEIARNWGERYFSSNYE 499 Query: 272 RLAVTKGKVDASDYFRNEQSVPPLL 198 RL K +D ++ F + QS+PP++ Sbjct: 500 RLVKAKTLIDPNNVFNHPQSIPPMM 524
>CYF_PINTH (P41619) Apocytochrome f precursor| Length = 319 Score = 32.7 bits (73), Expect = 0.54 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 10/65 (15%) Frame = +3 Query: 168 TGQVSPSLPREKWRYALLVSE----------VVAGVHLPLGDGEPLEVGPEVTLTPHLAG 317 TG+VS L +EK Y + + V G L + +GE ++V +T P+L G Sbjct: 210 TGRVSKILRKEKGGYEITIDNTSDGGQVVDIVPPGPELLISEGELIKVDQPLTNNPNLGG 269 Query: 318 FVAGD 332 F GD Sbjct: 270 FGQGD 274
>CYF_MARPO (P06246) Apocytochrome f precursor| Length = 320 Score = 32.7 bits (73), Expect = 0.54 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 10/65 (15%) Frame = +3 Query: 168 TGQVSPSLPREKWRYALLVSEV----------VAGVHLPLGDGEPLEVGPEVTLTPHLAG 317 TG+VS +EK Y + + ++ AG L + +GE ++V +T P++ G Sbjct: 211 TGKVSKIFRKEKGGYEITIDDISDGHKVVDISAAGPELIISEGELVKVDQPLTNNPNVGG 270 Query: 318 FVAGD 332 F GD Sbjct: 271 FGQGD 275
>CYF_PSINU (Q8WI07) Apocytochrome f precursor| Length = 321 Score = 32.7 bits (73), Expect = 0.54 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 10/65 (15%) Frame = +3 Query: 171 GQVSPSLPREKWRYALLVSE----------VVAGVHLPLGDGEPLEVGPEVTLTPHLAGF 320 G+V+ L REK Y + + + V G L + +GE +++ +T P+L GF Sbjct: 213 GKVTKILRREKGGYEITIEDTLEGRRVVDIVPPGPELIISEGEFIKIDQPLTNNPNLGGF 272 Query: 321 VAGDT 335 GDT Sbjct: 273 GQGDT 277
>CYF_PINKO (Q85X29) Apocytochrome f precursor| Length = 319 Score = 32.0 bits (71), Expect = 0.93 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 10/65 (15%) Frame = +3 Query: 168 TGQVSPSLPREKWRYALLVSE----------VVAGVHLPLGDGEPLEVGPEVTLTPHLAG 317 TG+VS L +EK Y + + V G L + +GE ++V +T P++ G Sbjct: 210 TGRVSKILRKEKGGYEITIDNKSDGGQVVDIVPPGPELLISEGELIKVDQPLTNNPNMGG 269 Query: 318 FVAGD 332 F GD Sbjct: 270 FGQGD 274
>CYF_PICAB (O47042) Apocytochrome f precursor| Length = 319 Score = 31.6 bits (70), Expect = 1.2 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 10/65 (15%) Frame = +3 Query: 168 TGQVSPSLPREKWRYALLVSE----------VVAGVHLPLGDGEPLEVGPEVTLTPHLAG 317 TG+VS L +EK Y + + V G L + +GE ++V +T P++ G Sbjct: 210 TGRVSKILRKEKGGYEITIDNTSDGGQVVDIVPPGPELLISEGELIKVDQPLTNNPNVGG 269 Query: 318 FVAGD 332 F GD Sbjct: 270 FGQGD 274
>CYF_HUPLU (Q5SD39) Apocytochrome f precursor| Length = 320 Score = 30.8 bits (68), Expect = 2.1 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 10/65 (15%) Frame = +3 Query: 168 TGQVSPSLPREKWRYAL----------LVSEVVAGVHLPLGDGEPLEVGPEVTLTPHLAG 317 TG+VS +EK Y + +V V G L + +GE ++V +T P++ G Sbjct: 211 TGRVSKISRKEKGGYEITVENTLDGRSVVDTVPPGPELIISEGESIKVDQPLTNNPNVGG 270 Query: 318 FVAGD 332 F GD Sbjct: 271 FGQGD 275
>CYF_ANTFO (Q85AR2) Apocytochrome f precursor| Length = 322 Score = 30.0 bits (66), Expect = 3.5 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 10/65 (15%) Frame = +3 Query: 168 TGQVSPSLPREKWRYALLVSE----------VVAGVHLPLGDGEPLEVGPEVTLTPHLAG 317 TG + L +EK Y +++ V G L + +GE ++V +T P++ G Sbjct: 213 TGIIKKVLRKEKGGYEIIIDNTLDGRQVIDIVPPGPELIISEGESIKVDQPLTNNPNVGG 272 Query: 318 FVAGD 332 F GD Sbjct: 273 FGQGD 277
>S17A5_HUMAN (Q9NRA2) Sialin (Solute carrier family 17 member 5) (Sodium/sialic| acid cotransporter) (AST) (Membrane glycoprotein HP59) Length = 495 Score = 29.6 bits (65), Expect = 4.6 Identities = 27/103 (26%), Positives = 47/103 (45%) Frame = +3 Query: 24 FKYSCSYHQISNLMRIYCHKFSRVSSYHERFFHSKPYPLLQFYVLRL*TGQVSPSLPREK 203 F Y+ +++ + L+ Y + R + F S PY L ++ + +GQ + +L R K Sbjct: 299 FSYNWTFYTLLTLLPTYMKEILRFNVQENGFLSSLPY--LGSWLCMILSGQAADNL-RAK 355 Query: 204 WRYALLVSEVVAGVHLPLGDGEPLEVGPEVTLTPHLAGFVAGD 332 W ++ L V + +G +GP V L AGF+ D Sbjct: 356 WNFSTL---CVRRIFSLIG-----MIGPAVFLV--AAGFIGCD 388
>NIA2_MAIZE (P39871) Nitrate reductase [NAD(P)H] (EC 1.7.1.2) (NR) (Fragment)| Length = 231 Score = 29.6 bits (65), Expect = 4.6 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 7/58 (12%) Frame = +3 Query: 159 RL*TGQVSPSLPREKWRYAL-LVSEVVAGVHLPLGDGEPLEV--GP----EVTLTPHL 311 RL V +P + W Y + V E V HLPLGD E + + GP E T+ P L Sbjct: 160 RLKVWYVVSKVPEDGWEYGVGRVDEHVMREHLPLGDSETIALVCGPPAMIECTVRPGL 217
>AOSL_PLEHO (O16025) Allene oxide synthase-lipoxygenase protein [Includes:| Allene oxide synthase (EC 4.2.1.92) (Hydroperoxidehydrase); Arachidonate 8-lipoxygenase (EC 1.13.11.40)] Length = 1066 Score = 29.6 bits (65), Expect = 4.6 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 7/56 (12%) Frame = -3 Query: 449 PNWISGLYNFME---PFVSKNPRGAYVNYR----DLDIGENTVVGGVTSYETGKVW 303 P+ + LY + + PF +K+ + Y YR D+DI E G +T E K+W Sbjct: 184 PDTFAHLYYYSQVTMPFKAKDGKVRYCRYRALPGDVDIKEEDESGRLTEEEQRKIW 239
>YL671_MIMIV (Q5UNT3) Hypothetical protein L671| Length = 152 Score = 29.6 bits (65), Expect = 4.6 Identities = 16/54 (29%), Positives = 29/54 (53%) Frame = +1 Query: 4 GV*CIICLNIHVHTIRSQISCEYIVINFHA*VAIMKGSSILSHIHCYSFMSSDY 165 G+ C+ C+ + + +SC+ + NFH +I+ GS+ H C S + SD+ Sbjct: 52 GIICLDCIKNYDYVPYKSVSCDLCLKNFH---SIVPGSTCQGH-RCSSEVFSDH 101
>SYI_HELHP (Q7VGX8) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 930 Score = 29.3 bits (64), Expect = 6.0 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = -1 Query: 232 TSETSRAYRHFSRGSEGETWPVYNLRT*NCSSGYGLE 122 T A+RH S +GE +++L +C+ GY LE Sbjct: 778 TYTADEAFRHSSAALKGEYESIFDLPKLSCAQGYNLE 814
>CYF_PEA (P00155) Apocytochrome f precursor| Length = 320 Score = 28.9 bits (63), Expect = 7.8 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 10/65 (15%) Frame = +3 Query: 168 TGQVSPSLPREKWRYALLV------SEVV----AGVHLPLGDGEPLEVGPEVTLTPHLAG 317 TG V + +EK Y + + SEV+ G L + +GE +++ +T P++ G Sbjct: 211 TGVVKQIIRKEKGGYEITIVDASDGSEVIDIIPPGPELLVSEGESIKLDQPLTSNPNVGG 270 Query: 318 FVAGD 332 F GD Sbjct: 271 FGQGD 275
>EVPL_HUMAN (Q92817) Envoplakin (210 kDa paraneoplastic pemphigus antigen) (p210)| (210 kDa cornified envelope precursor protein) Length = 2033 Score = 28.9 bits (63), Expect = 7.8 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 6/45 (13%) Frame = -2 Query: 297 ELLRGQLPEARR------HQGEGGRQRLLQKRAERTATSLEEVKV 181 E L+ QL E R+ H+ E R +LLQ R +R LEE +V Sbjct: 915 EALKAQLEEERKRVARVQHELEAQRSQLLQLRTQRPLERLEEKEV 959
>CYF_PHOLA (P95522) Apocytochrome f precursor| Length = 338 Score = 28.9 bits (63), Expect = 7.8 Identities = 13/39 (33%), Positives = 22/39 (56%) Frame = +3 Query: 219 LVSEVVAGVHLPLGDGEPLEVGPEVTLTPHLAGFVAGDT 335 +V ++ AG L + +GE + G +T P++ GF DT Sbjct: 248 IVDKIPAGPELIVSEGEEVAAGAALTNNPNVGGFGQKDT 286 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,317,801 Number of Sequences: 219361 Number of extensions: 1181937 Number of successful extensions: 3017 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2969 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3014 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3478785780 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
