Clone Name | rbart35f02 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 182 bits (92), Expect = 7e-43 Identities = 196/230 (85%), Gaps = 3/230 (1%) Strand = Plus / Plus Query: 196 gagagaagtggcggtacgctctgctcgtttctgaagtagtcgctggcgtccaccttcccc 255 |||| ||| ||||| | |||||||||||| | |||||||||||||||||||||||||||| Sbjct: 20460565 gagacaagcggcgggatgctctgctcgttccggaagtagtcgctggcgtccaccttcccc 20460624 Query: 256 ttggtgacggcgagcctctggaagttggcc---ccgaagtaactctcaccccacaccttg 312 ||||| | || |||||| |||||||||| |||||||| |||| ||||||||| || Sbjct: 20460625 ttggtcagcgccagcctcctgaagttggccgcgccgaagtacttctccccccacaccctg 20460684 Query: 313 ccggtttcgtagctggtgacaccgccgaccaccgtgttctccccgatgtccaggtcccgg 372 ||| | |||||||| || || |||||| |||||| |||||| |||||||| ||||| ||| Sbjct: 20460685 ccgttctcgtagctcgtcacgccgccggccaccgcgttctcgccgatgtcgaggtcgcgg 20460744 Query: 373 tagttcacgtacgcacccctcgggttcttgctaacgaacggctccatgaa 422 ||||||||||||||| |||||||||| || | ||||||||||||||||| Sbjct: 20460745 tagttcacgtacgcatccctcgggttgctggtgacgaacggctccatgaa 20460794 Score = 117 bits (59), Expect = 4e-23 Identities = 184/225 (81%), Gaps = 3/225 (1%) Strand = Plus / Plus Query: 201 aagtggcggtacgctctgctcgtttctgaagtagtcgctggcgtccaccttccccttggt 260 ||||||||| | |||||||||||| |||||||||||| |||||| | || | |||||| Sbjct: 20485042 aagtggcgggatgctctgctcgttcctgaagtagtcgtcggcgtcgatctgcgccttggc 20485101 Query: 261 gacggcgagcctctggaagttggccccgaagtaactctcaccccacaccttgccggtttc 320 | |||||||| |||| |||| ||| |||||| |||| |||||||||||||||| || Sbjct: 20485102 catggcgagccgctggtagttccccctgaagtacttctccccccacaccttgccggcgtc 20485161 Query: 321 gtagctggtgacaccgc---cgaccaccgtgttctccccgatgtccaggtcccggtagtt 377 ||||||| |||| |||| || | ||| |||||| |||| ||||||||||| |||||| Sbjct: 20485162 gtagctgctgacgccgccggcgccgaccacgttctcgccgaggtccaggtccctgtagtt 20485221 Query: 378 cacgtacgcacccctcgggttcttgctaacgaacggctccatgaa 422 ||||||| ||||||||| |||||| ||||||||| ||||||| Sbjct: 20485222 ggcgtacgcctccctcgggtccttgctcacgaacggcgccatgaa 20485266 Score = 101 bits (51), Expect = 2e-18 Identities = 90/103 (87%) Strand = Plus / Plus Query: 341 ccaccgtgttctccccgatgtccaggtcccggtagttcacgtacgcacccctcgggttct 400 |||||| |||||| |||||||||||||||||| ||||||||||||| ||||||||| Sbjct: 20436902 ccaccgcgttctcgccgatgtccaggtcccggaagttcacgtacgcctccctcgggtcgc 20436961 Query: 401 tgctaacgaacggctccatgaagttgtacaggccactgatcca 443 |||| ||| ||||||||||||| |||||||||||||||||| Sbjct: 20436962 tgctgacgtacggctccatgaacgcgtacaggccactgatcca 20437004 Score = 61.9 bits (31), Expect = 2e-06 Identities = 85/103 (82%) Strand = Plus / Plus Query: 213 gctctgctcgtttctgaagtagtcgctggcgtccaccttccccttggtgacggcgagcct 272 |||||||||||| |||||| ||||| ||| |||||||| |||| || ||||||||| Sbjct: 20420278 gctctgctcgttcctgaagaagtcggtgggatccaccttggccttcgtcctggcgagcct 20420337 Query: 273 ctggaagttggccccgaagtaactctcaccccacaccttgccg 315 || ||||||| || |||||| |||| ||||||||||||||| Sbjct: 20420338 ctcgaagttgcccttgaagtacttctcgccccacaccttgccg 20420380 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Plus Query: 355 ccgatgtccaggtcccggtagttcacgtacgcacccctcgggttcttgctaacgaacggc 414 |||| ||| ||||||| |||||| |||||||| ||||||||||||| | ||| ||||| Sbjct: 20420426 ccgaggtcgaggtccctgtagttgacgtacgcctgcctcgggttcttggtgacgtacggc 20420485 Query: 415 tccatgaa 422 |||||||| Sbjct: 20420486 tccatgaa 20420493 Score = 50.1 bits (25), Expect = 0.007 Identities = 58/69 (84%) Strand = Plus / Plus Query: 364 aggtcccggtagttcacgtacgcacccctcgggttcttgctaacgaacggctccatgaag 423 ||||||| |||||| | ||||| |||| ||||||||||| ||| | ||||||||||| Sbjct: 20464873 aggtccctgtagttggcatacgcctccctggggttcttgctcacgtagggctccatgaac 20464932 Query: 424 ttgtacagg 432 ||||||||| Sbjct: 20464933 ttgtacagg 20464941 Score = 50.1 bits (25), Expect = 0.007 Identities = 46/53 (86%) Strand = Plus / Plus Query: 263 cggcgagcctctggaagttggccccgaagtaactctcaccccacaccttgccg 315 |||||||||||| ||||||| | ||||||| |||| ||||||||||||||| Sbjct: 20436821 cggcgagcctctcgaagttgccggcgaagtacttctccccccacaccttgccg 20436873 Score = 44.1 bits (22), Expect = 0.43 Identities = 31/34 (91%) Strand = Plus / Plus Query: 204 tggcggtacgctctgctcgtttctgaagtagtcg 237 |||||| | |||||||||||| |||||||||||| Sbjct: 20436762 tggcgggatgctctgctcgttcctgaagtagtcg 20436795
>dbj|AP003686.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0659D09 Length = 168253 Score = 182 bits (92), Expect = 7e-43 Identities = 196/230 (85%), Gaps = 3/230 (1%) Strand = Plus / Plus Query: 196 gagagaagtggcggtacgctctgctcgtttctgaagtagtcgctggcgtccaccttcccc 255 |||| ||| ||||| | |||||||||||| | |||||||||||||||||||||||||||| Sbjct: 32860 gagacaagcggcgggatgctctgctcgttccggaagtagtcgctggcgtccaccttcccc 32919 Query: 256 ttggtgacggcgagcctctggaagttggcc---ccgaagtaactctcaccccacaccttg 312 ||||| | || |||||| |||||||||| |||||||| |||| ||||||||| || Sbjct: 32920 ttggtcagcgccagcctcctgaagttggccgcgccgaagtacttctccccccacaccctg 32979 Query: 313 ccggtttcgtagctggtgacaccgccgaccaccgtgttctccccgatgtccaggtcccgg 372 ||| | |||||||| || || |||||| |||||| |||||| |||||||| ||||| ||| Sbjct: 32980 ccgttctcgtagctcgtcacgccgccggccaccgcgttctcgccgatgtcgaggtcgcgg 33039 Query: 373 tagttcacgtacgcacccctcgggttcttgctaacgaacggctccatgaa 422 ||||||||||||||| |||||||||| || | ||||||||||||||||| Sbjct: 33040 tagttcacgtacgcatccctcgggttgctggtgacgaacggctccatgaa 33089 Score = 117 bits (59), Expect = 4e-23 Identities = 184/225 (81%), Gaps = 3/225 (1%) Strand = Plus / Plus Query: 201 aagtggcggtacgctctgctcgtttctgaagtagtcgctggcgtccaccttccccttggt 260 ||||||||| | |||||||||||| |||||||||||| |||||| | || | |||||| Sbjct: 57337 aagtggcgggatgctctgctcgttcctgaagtagtcgtcggcgtcgatctgcgccttggc 57396 Query: 261 gacggcgagcctctggaagttggccccgaagtaactctcaccccacaccttgccggtttc 320 | |||||||| |||| |||| ||| |||||| |||| |||||||||||||||| || Sbjct: 57397 catggcgagccgctggtagttccccctgaagtacttctccccccacaccttgccggcgtc 57456 Query: 321 gtagctggtgacaccgc---cgaccaccgtgttctccccgatgtccaggtcccggtagtt 377 ||||||| |||| |||| || | ||| |||||| |||| ||||||||||| |||||| Sbjct: 57457 gtagctgctgacgccgccggcgccgaccacgttctcgccgaggtccaggtccctgtagtt 57516 Query: 378 cacgtacgcacccctcgggttcttgctaacgaacggctccatgaa 422 ||||||| ||||||||| |||||| ||||||||| ||||||| Sbjct: 57517 ggcgtacgcctccctcgggtccttgctcacgaacggcgccatgaa 57561 Score = 101 bits (51), Expect = 2e-18 Identities = 90/103 (87%) Strand = Plus / Plus Query: 341 ccaccgtgttctccccgatgtccaggtcccggtagttcacgtacgcacccctcgggttct 400 |||||| |||||| |||||||||||||||||| ||||||||||||| ||||||||| Sbjct: 9197 ccaccgcgttctcgccgatgtccaggtcccggaagttcacgtacgcctccctcgggtcgc 9256 Query: 401 tgctaacgaacggctccatgaagttgtacaggccactgatcca 443 |||| ||| ||||||||||||| |||||||||||||||||| Sbjct: 9257 tgctgacgtacggctccatgaacgcgtacaggccactgatcca 9299 Score = 50.1 bits (25), Expect = 0.007 Identities = 58/69 (84%) Strand = Plus / Plus Query: 364 aggtcccggtagttcacgtacgcacccctcgggttcttgctaacgaacggctccatgaag 423 ||||||| |||||| | ||||| |||| ||||||||||| ||| | ||||||||||| Sbjct: 37168 aggtccctgtagttggcatacgcctccctggggttcttgctcacgtagggctccatgaac 37227 Query: 424 ttgtacagg 432 ||||||||| Sbjct: 37228 ttgtacagg 37236 Score = 50.1 bits (25), Expect = 0.007 Identities = 46/53 (86%) Strand = Plus / Plus Query: 263 cggcgagcctctggaagttggccccgaagtaactctcaccccacaccttgccg 315 |||||||||||| ||||||| | ||||||| |||| ||||||||||||||| Sbjct: 9116 cggcgagcctctcgaagttgccggcgaagtacttctccccccacaccttgccg 9168 Score = 44.1 bits (22), Expect = 0.43 Identities = 31/34 (91%) Strand = Plus / Plus Query: 204 tggcggtacgctctgctcgtttctgaagtagtcg 237 |||||| | |||||||||||| |||||||||||| Sbjct: 9057 tggcgggatgctctgctcgttcctgaagtagtcg 9090
>dbj|AK073505.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046H14, full insert sequence Length = 1813 Score = 182 bits (92), Expect = 7e-43 Identities = 196/230 (85%), Gaps = 3/230 (1%) Strand = Plus / Minus Query: 196 gagagaagtggcggtacgctctgctcgtttctgaagtagtcgctggcgtccaccttcccc 255 |||| ||| ||||| | |||||||||||| | |||||||||||||||||||||||||||| Sbjct: 1622 gagacaagcggcgggatgctctgctcgttccggaagtagtcgctggcgtccaccttcccc 1563 Query: 256 ttggtgacggcgagcctctggaagttggcc---ccgaagtaactctcaccccacaccttg 312 ||||| | || |||||| |||||||||| |||||||| |||| ||||||||| || Sbjct: 1562 ttggtcagcgccagcctcctgaagttggccgcgccgaagtacttctccccccacaccctg 1503 Query: 313 ccggtttcgtagctggtgacaccgccgaccaccgtgttctccccgatgtccaggtcccgg 372 ||| | |||||||| || || |||||| |||||| |||||| |||||||| ||||| ||| Sbjct: 1502 ccgttctcgtagctcgtcacgccgccggccaccgcgttctcgccgatgtcgaggtcgcgg 1443 Query: 373 tagttcacgtacgcacccctcgggttcttgctaacgaacggctccatgaa 422 ||||||||||||||| |||||||||| || | ||||||||||||||||| Sbjct: 1442 tagttcacgtacgcatccctcgggttgctggtgacgaacggctccatgaa 1393
>dbj|AK109673.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-145-B05, full insert sequence Length = 1972 Score = 117 bits (59), Expect = 4e-23 Identities = 184/225 (81%), Gaps = 3/225 (1%) Strand = Plus / Minus Query: 201 aagtggcggtacgctctgctcgtttctgaagtagtcgctggcgtccaccttccccttggt 260 ||||||||| | |||||||||||| |||||||||||| |||||| | || | |||||| Sbjct: 1630 aagtggcgggatgctctgctcgttcctgaagtagtcgtcggcgtcgatctgcgccttggc 1571 Query: 261 gacggcgagcctctggaagttggccccgaagtaactctcaccccacaccttgccggtttc 320 | |||||||| |||| |||| ||| |||||| |||| |||||||||||||||| || Sbjct: 1570 catggcgagccgctggtagttccccctgaagtacttctccccccacaccttgccggcgtc 1511 Query: 321 gtagctggtgacaccgc---cgaccaccgtgttctccccgatgtccaggtcccggtagtt 377 ||||||| |||| |||| || | ||| |||||| |||| ||||||||||| |||||| Sbjct: 1510 gtagctgctgacgccgccggcgccgaccacgttctcgccgaggtccaggtccctgtagtt 1451 Query: 378 cacgtacgcacccctcgggttcttgctaacgaacggctccatgaa 422 ||||||| ||||||||| |||||| ||||||||| ||||||| Sbjct: 1450 ggcgtacgcctccctcgggtccttgctcacgaacggcgccatgaa 1406
>emb|AJ862834.1| Hordeum vulgare partial horv4 gene for pollen allergen Hor v 4 Length = 1608 Score = 87.7 bits (44), Expect = 3e-14 Identities = 91/104 (87%), Gaps = 2/104 (1%) Strand = Plus / Minus Query: 213 gctctgctcgtttctgaagtagtcgctggcg-tccaccttccccttggtgacggcgagcc 271 |||||||||||| ||||||||||| |||| | |||||||| |||||||||| |||||||| Sbjct: 1533 gctctgctcgttcctgaagtagtc-ctggggatccaccttgcccttggtgatggcgagcc 1475 Query: 272 tctggaagttggccccgaagtaactctcaccccacaccttgccg 315 | ||||||||| || |||||| |||| ||||||||||||||| Sbjct: 1474 tttggaagttgcccttgaagtacttctcgccccacaccttgccg 1431 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 394 gggttcttgctaacgaacggctccatgaagttgta 428 ||||||||||| ||||||||||||||||| ||||| Sbjct: 1352 gggttcttgctcacgaacggctccatgaatttgta 1318
>emb|AJ512487.2|PPR512487 Phleum pratense partial phlp4 gene for pollen allergen Phl p 4, allele A1 Length = 1567 Score = 83.8 bits (42), Expect = 5e-13 Identities = 60/66 (90%) Strand = Plus / Minus Query: 213 gctctgctcgtttctgaagtagtcgctggcgtccaccttccccttggtgacggcgagcct 272 |||||||||||| |||||||||||| ||| |||||||| |||||||||| ||||||||| Sbjct: 1500 gctctgctcgttcctgaagtagtcggtgggatccaccttgcccttggtgatggcgagcct 1441 Query: 273 ctggaa 278 |||||| Sbjct: 1440 ctggaa 1435
>emb|AJ862830.1| Secale cereale partial secc4 gene for pollen allergen Sec c 4, allele A Length = 1603 Score = 77.8 bits (39), Expect = 3e-11 Identities = 98/115 (85%), Gaps = 2/115 (1%) Strand = Plus / Minus Query: 202 agtggcggtacgctctgctcgtttctgaagtagtcgctggcg-tccaccttccccttggt 260 |||||||| | |||||||||||| ||||||||||| ||| | |||||||| |||||||| Sbjct: 1541 agtggcgggatgctctgctcgttcctgaagtagtc-ctgaggatccaccttgcccttggt 1483 Query: 261 gacggcgagcctctggaagttggccccgaagtaactctcaccccacaccttgccg 315 | ||||||||| ||||||||| || |||||| ||||||||||||| |||||| Sbjct: 1482 aatggcgagcctttggaagttgcccttgaagtacttctcaccccacactttgccg 1428
>gb|AC133608.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0085G12, complete sequence Length = 121470 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 334 ccgccgaccaccgtgttctccccgatgtccaggtcccggtagttcacgtacgc 386 ||||||||||||| |||||| |||||||| ||||| |||||||||||| |||| Sbjct: 73275 ccgccgaccaccgcgttctcgccgatgtcaaggtcacggtagttcacgaacgc 73327 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Plus Query: 198 gagaagtggcggtacgctctgctcgtttctgaagtagtcgctggcgtccaccttcccctt 257 |||||||||||| | |||||||||||| | ||||||||||| || |||||| ||||||| Sbjct: 73139 gagaagtggcgggatgctctgctcgttgcggaagtagtcgccgggatccaccctcccctt 73198
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 334 ccgccgaccaccgtgttctccccgatgtccaggtcccggtagttcacgtacgc 386 ||||||||||||| |||||| |||||||| ||||| |||||||||||| |||| Sbjct: 17005668 ccgccgaccaccgcgttctcgccgatgtcaaggtcacggtagttcacgaacgc 17005720 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Plus Query: 198 gagaagtggcggtacgctctgctcgtttctgaagtagtcgctggcgtccaccttcccctt 257 |||||||||||| | |||||||||||| | ||||||||||| || |||||| ||||||| Sbjct: 17005532 gagaagtggcgggatgctctgctcgttgcggaagtagtcgccgggatccaccctcccctt 17005591
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 334 ccgccgaccaccgtgttctccccgatgtccaggtcccggtagttcacgtacgc 386 ||||||||||||| |||||| |||||||| ||||| |||||||||||| |||| Sbjct: 17100320 ccgccgaccaccgcgttctcgccgatgtcaaggtcacggtagttcacgaacgc 17100372 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Plus Query: 198 gagaagtggcggtacgctctgctcgtttctgaagtagtcgctggcgtccaccttcccctt 257 |||||||||||| | |||||||||||| | ||||||||||| || |||||| ||||||| Sbjct: 17100184 gagaagtggcgggatgctctgctcgttgcggaagtagtcgccgggatccaccctcccctt 17100243
>emb|AJ512488.2|PPR512488 Phleum pratense partial phlp4 gene for pollen allergen Phl p 4, allele B1 Length = 1580 Score = 63.9 bits (32), Expect = 5e-07 Identities = 170/216 (78%) Strand = Plus / Minus Query: 213 gctctgctcgtttctgaagtagtcgctggcgtccaccttccccttggtgacggcgagcct 272 |||||||||||| |||||||||||| | | || ||||| |||||||| | ||||||||| Sbjct: 1500 gctctgctcgttcctgaagtagtcggtaggatcgaccttgcccttggtaatggcgagcct 1441 Query: 273 ctggaagttggccccgaagtaactctcaccccacaccttgccggtttcgtagctggtgac 332 || ||||||| || |||||| ||| ||||| ||||||||| | ||||| ||| ||| Sbjct: 1440 ctcgaagttgcccttgaagtatttctggccccagaccttgccgctggcgtaggtggagac 1381 Query: 333 accgccgaccaccgtgttctccccgatgtccaggtcccggtagttcacgtacgcacccct 392 || ||||||| |||| |||| ||| | ||||| |||||| ||||||| ||| Sbjct: 1380 gtcgttgaccacctcgttcctgccgaggtcgatgtccctgtagtttgcgtacgcctgcct 1321 Query: 393 cgggttcttgctaacgaacggctccatgaagttgta 428 ||||||||||| ||| | ||||||||| ||||||| Sbjct: 1320 ggggttcttgctcacgtagggctccatgtagttgta 1285
>emb|AJ862831.1| Secale cereale partial secc4 gene for pollen allergen Sec c 4, allele B Length = 1644 Score = 63.9 bits (32), Expect = 5e-07 Identities = 88/104 (84%), Gaps = 2/104 (1%) Strand = Plus / Minus Query: 213 gctctgctcgtttctgaagtagtcgctg-gcgtccaccttccccttggtgacggcgagcc 271 |||||||||||| ||||||||||| ||| | |||||||| |||||||| | |||||||| Sbjct: 1539 gctctgctcgttcctgaagtagtc-ctgaggatccaccttgcccttggtaatggcgagcc 1481 Query: 272 tctggaagttggccccgaagtaactctcaccccacaccttgccg 315 | ||||||||| || |||||| |||| ||||| ||||||||| Sbjct: 1480 tttggaagttgcccttgaagtacttctcgccccagaccttgccg 1437 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 394 gggttcttgctaacgaacggctccatgaa 422 ||||||||||| ||| ||||||||||||| Sbjct: 1358 gggttcttgctgacgtacggctccatgaa 1330
>gb|DQ251188.1| Phleum pratense major pollen allergen Phl p 4 precursor, mRNA, complete cds Length = 1741 Score = 63.9 bits (32), Expect = 5e-07 Identities = 170/216 (78%) Strand = Plus / Minus Query: 213 gctctgctcgtttctgaagtagtcgctggcgtccaccttccccttggtgacggcgagcct 272 |||||||||||| |||||||||||| | | || ||||| |||||||| | ||||||||| Sbjct: 1586 gctctgctcgttcctgaagtagtcggtaggatcgaccttgcccttggtaatggcgagcct 1527 Query: 273 ctggaagttggccccgaagtaactctcaccccacaccttgccggtttcgtagctggtgac 332 || ||||||| || |||||| ||| ||||| ||||||||| | ||||| ||| ||| Sbjct: 1526 ctcgaagttgcccttgaagtatttctggccccagaccttgccgctggcgtaggtggagac 1467 Query: 333 accgccgaccaccgtgttctccccgatgtccaggtcccggtagttcacgtacgcacccct 392 || ||||||| |||| |||| ||| | ||||| |||||| ||||||| ||| Sbjct: 1466 gtcgttgaccacctcgttcctgccgaggtcgatgtccctgtagtttgcgtacgcctgcct 1407 Query: 393 cgggttcttgctaacgaacggctccatgaagttgta 428 ||||||||||| ||| | ||||||||| ||||||| Sbjct: 1406 ggggttcttgctcacgtagggctccatgtagttgta 1371
>dbj|AP004731.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0016D02 Length = 157822 Score = 61.9 bits (31), Expect = 2e-06 Identities = 85/103 (82%) Strand = Plus / Plus Query: 213 gctctgctcgtttctgaagtagtcgctggcgtccaccttccccttggtgacggcgagcct 272 |||||||||||| |||||| ||||| ||| |||||||| |||| || ||||||||| Sbjct: 143673 gctctgctcgttcctgaagaagtcggtgggatccaccttggccttcgtcctggcgagcct 143732 Query: 273 ctggaagttggccccgaagtaactctcaccccacaccttgccg 315 || ||||||| || |||||| |||| ||||||||||||||| Sbjct: 143733 ctcgaagttgcccttgaagtacttctcgccccacaccttgccg 143775 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Plus Query: 355 ccgatgtccaggtcccggtagttcacgtacgcacccctcgggttcttgctaacgaacggc 414 |||| ||| ||||||| |||||| |||||||| ||||||||||||| | ||| ||||| Sbjct: 143821 ccgaggtcgaggtccctgtagttgacgtacgcctgcctcgggttcttggtgacgtacggc 143880 Query: 415 tccatgaa 422 |||||||| Sbjct: 143881 tccatgaa 143888
>dbj|AK072611.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133A01, full insert sequence Length = 2030 Score = 61.9 bits (31), Expect = 2e-06 Identities = 85/103 (82%) Strand = Plus / Minus Query: 213 gctctgctcgtttctgaagtagtcgctggcgtccaccttccccttggtgacggcgagcct 272 |||||||||||| |||||| ||||| ||| |||||||| |||| || ||||||||| Sbjct: 1588 gctctgctcgttcctgaagaagtcggtgggatccaccttggccttcgtcctggcgagcct 1529 Query: 273 ctggaagttggccccgaagtaactctcaccccacaccttgccg 315 || ||||||| || |||||| |||| ||||||||||||||| Sbjct: 1528 ctcgaagttgcccttgaagtacttctcgccccacaccttgccg 1486 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 355 ccgatgtccaggtcccggtagttcacgtacgcacccctcgggttcttgctaacgaacggc 414 |||| ||| ||||||| |||||| |||||||| ||||||||||||| | ||| ||||| Sbjct: 1440 ccgaggtcgaggtccctgtagttgacgtacgcctgcctcgggttcttggtgacgtacggc 1381 Query: 415 tccatgaa 422 |||||||| Sbjct: 1380 tccatgaa 1373
>gb|AY105422.1| Zea mays PCO091928 mRNA sequence Length = 664 Score = 61.9 bits (31), Expect = 2e-06 Identities = 67/79 (84%) Strand = Plus / Minus Query: 204 tggcggtacgctctgctcgtttctgaagtagtcgctggcgtccaccttccccttggtgac 263 |||||| | |||||||||||| ||||||||||||| || ||||||||| |||| || Sbjct: 142 tggcgggatgctctgctcgttcctgaagtagtcgcaggggtccaccttggccttagtcct 83 Query: 264 ggcgagcctctggaagttg 282 ||||||||||| ||||||| Sbjct: 82 ggcgagcctctcgaagttg 64
>emb|AJ862832.1| Triticum aestivum partial tria4 gene for pollen allergen Tri a 4, allele A Length = 1603 Score = 56.0 bits (28), Expect = 1e-04 Identities = 87/104 (83%), Gaps = 2/104 (1%) Strand = Plus / Minus Query: 213 gctctgctcgtttctgaagtagtcgctg-gcgtccaccttccccttggtgacggcgagcc 271 |||||||||||| ||||||||||| ||| | |||||||| |||||||| | ||||||| Sbjct: 1530 gctctgctcgttcctgaagtagtc-ctgaggatccaccttgcccttggtaatagcgagcc 1472 Query: 272 tctggaagttggccccgaagtaactctcaccccacaccttgccg 315 | ||||||||| || |||||| |||| ||||| ||||||||| Sbjct: 1471 tttggaagttgcccttgaagtacttctcgccccaaaccttgccg 1428 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Minus Query: 394 gggttcttgctaacgaacggctccatgaagttgtaca 430 ||||||||||| ||| ||||||||||||| ||||||| Sbjct: 1349 gggttcttgctcacgtacggctccatgaaattgtaca 1313
>emb|AJ862833.1| Triticum aestivum partial tria4 gene for pollen allergen Tri a 4, allele B Length = 1603 Score = 50.1 bits (25), Expect = 0.007 Identities = 58/69 (84%) Strand = Plus / Minus Query: 247 accttccccttggtgacggcgagcctctggaagttggccccgaagtaactctcaccccac 306 ||||| |||||||| | ||||||||| ||||||||| | |||||| |||| |||||| Sbjct: 1496 accttgcccttggtaatggcgagcctttggaagttgctcttgaagtacttctcgccccac 1437 Query: 307 accttgccg 315 ||||||||| Sbjct: 1436 accttgccg 1428 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 394 gggttcttgctaacgaacggctccatgaagttgta 428 ||||||||||| ||| ||||||||||||| ||||| Sbjct: 1349 gggttcttgctcacgtacggctccatgaaattgta 1315
>gb|BT009471.1| Triticum aestivum clone wr1.pk0028.b10:fis, full insert mRNA sequence Length = 588 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Minus Query: 342 caccgtgttctccccgatgtccaggtcccggtagttcacgtacgc 386 ||||| ||||| |||||||||||||||||| |||| |||||||| Sbjct: 250 caccgcgttctggccgatgtccaggtcccggaagttgacgtacgc 206 Score = 48.1 bits (24), Expect = 0.027 Identities = 24/24 (100%) Strand = Plus / Minus Query: 213 gctctgctcgtttctgaagtagtc 236 |||||||||||||||||||||||| Sbjct: 382 gctctgctcgtttctgaagtagtc 359
>gb|AY451241.1| Cynodon dactylon FAD-linked oxidoreductase BG60 mRNA, complete cds Length = 1569 Score = 48.1 bits (24), Expect = 0.027 Identities = 90/112 (80%) Strand = Plus / Minus Query: 204 tggcggtacgctctgctcgtttctgaagtagtcgctggcgtccaccttccccttggtgac 263 |||||| | ||||||||| || ||||||||||| || ||| | ||| |||||||| Sbjct: 1560 tggcgggatgctctgctcattcctgaagtagtcttcggggtcgatcttacccttggtcct 1501 Query: 264 ggcgagcctctggaagttggccccgaagtaactctcaccccacaccttgccg 315 ||||||||||| ||||||| || |||||| |||| ||||| ||||||||| Sbjct: 1500 ggcgagcctctcgaagttgcccttgaagtacttctctccccataccttgccg 1449
>emb|AJ862835.1| Lolium perenne partial lolp4 gene for pollen allergen Lol p 4 Length = 1272 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 394 gggttcttgctaacgaacggctccatgaagttgta 428 ||||||||||| ||| ||||||||||| ||||||| Sbjct: 1095 gggttcttgctcacgtacggctccatgtagttgta 1061 Score = 44.1 bits (22), Expect = 0.43 Identities = 34/38 (89%) Strand = Plus / Minus Query: 244 tccaccttccccttggtgacggcgagcctctggaagtt 281 |||||||| |||||||| | ||||||||||| |||||| Sbjct: 1245 tccaccttgcccttggtaatggcgagcctctcgaagtt 1208
>gb|AC128736.4| Mus musculus chromosome 15 clone RP24-331C19, complete sequence Length = 161710 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Minus Query: 24 tttaaatattcatgttcataccatcagatct 54 |||||||||| |||||||||||| ||||||| Sbjct: 127052 tttaaatatttatgttcataccaccagatct 127022
>gb|BT009387.1| Triticum aestivum clone wlm96.pk035.d7:fis, full insert mRNA sequence Length = 1805 Score = 46.1 bits (23), Expect = 0.11 Identities = 62/75 (82%) Strand = Plus / Minus Query: 348 gttctccccgatgtccaggtcccggtagttcacgtacgcacccctcgggttcttgctaac 407 |||||| |||| ||||||||||| |||||| | ||| || |||||||||| ||| || Sbjct: 1446 gttctcgccgaggtccaggtccctgtagttgaagtaggcctccctcgggttggagctcac 1387 Query: 408 gaacggctccatgaa 422 ||||||| ||||||| Sbjct: 1386 gaacggcgccatgaa 1372 Score = 44.1 bits (22), Expect = 0.43 Identities = 31/34 (91%) Strand = Plus / Minus Query: 204 tggcggtacgctctgctcgtttctgaagtagtcg 237 |||||| | |||||||||||| |||||||||||| Sbjct: 1590 tggcgggatgctctgctcgttcctgaagtagtcg 1557
>gb|AC007581.6| Drosophila melanogaster clone BACR03I24, complete sequence Length = 163517 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 321 gtagctggtgacaccgccgaccacc 345 |||||||||||||||||| |||||| Sbjct: 61589 gtagctggtgacaccgcccaccacc 61565
>gb|AC124602.5| Mus musculus BAC clone RP23-37L7 from chromosome 7, complete sequence Length = 189065 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 caggccaggtttcaccttcac 189 ||||||||||||||||||||| Sbjct: 171056 caggccaggtttcaccttcac 171036
>emb|BX957235.12| Zebrafish DNA sequence from clone DKEY-84K17 in linkage group 17, complete sequence Length = 171764 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 gtgtataatgtattatctgtt 25 ||||||||||||||||||||| Sbjct: 844 gtgtataatgtattatctgtt 824
>gb|AC124461.3| Mus musculus BAC clone RP24-144C5 from chromosome 7, complete sequence Length = 185788 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 caggccaggtttcaccttcac 189 ||||||||||||||||||||| Sbjct: 94655 caggccaggtttcaccttcac 94635
>emb|BX936404.9| Zebrafish DNA sequence from clone CH211-237F6 in linkage group 17, complete sequence Length = 86765 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 5 gtgtataatgtattatctgtt 25 ||||||||||||||||||||| Sbjct: 1157 gtgtataatgtattatctgtt 1177
>emb|BX901953.5| Zebrafish DNA sequence from clone CH211-18G18 in linkage group 1, complete sequence Length = 170758 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 174 caggtttcaccttcacttcct 194 ||||||||||||||||||||| Sbjct: 159135 caggtttcaccttcacttcct 159155
>gb|AC007574.6|AC007574 Drosophila melanogaster, chromosome 2R, region 60D-60D, BAC clone BACR11C07, complete sequence Length = 171151 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 321 gtagctggtgacaccgccgaccacc 345 |||||||||||||||||| |||||| Sbjct: 168638 gtagctggtgacaccgcccaccacc 168614
>ref|NM_138836.1| Rattus norvegicus protease, serine, 8 (prostasin) (Prss8), mRNA Length = 2208 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 169 caggccaggtttcaccttcac 189 ||||||||||||||||||||| Sbjct: 2072 caggccaggtttcaccttcac 2092
>emb|BX322570.4| Zebrafish DNA sequence from clone DKEY-27H10 in linkage group 1, complete sequence Length = 185032 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 174 caggtttcaccttcacttcct 194 ||||||||||||||||||||| Sbjct: 92487 caggtttcaccttcacttcct 92467
>gb|AC079068.11| Homo sapiens chromosome 15, clone RP11-90A19, complete sequence Length = 137541 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 182 accttcacttcctcgagagaagtgg 206 ||||||||||||| ||||||||||| Sbjct: 93976 accttcacttcctggagagaagtgg 94000
>emb|AL844217.7| Zebrafish DNA sequence from clone DKEY-218L17, complete sequence Length = 246026 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 174 caggtttcaccttcacttcct 194 ||||||||||||||||||||| Sbjct: 64703 caggtttcaccttcacttcct 64683
>gb|AC149222.4| Mus musculus BAC clone RP23-325D10 from 7, complete sequence Length = 220651 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 169 caggccaggtttcaccttcac 189 ||||||||||||||||||||| Sbjct: 28548 caggccaggtttcaccttcac 28568
>gb|AE003464.2| Drosophila melanogaster chromosome 2R, section 71 of 73 of the complete sequence Length = 310958 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 321 gtagctggtgacaccgccgaccacc 345 |||||||||||||||||| |||||| Sbjct: 256691 gtagctggtgacaccgcccaccacc 256667
>gb|AC093175.9| Mus musculus Strain C57BL6/J Chromosome 7 BAC, RP23-200D13, complete sequence Length = 219763 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 169 caggccaggtttcaccttcac 189 ||||||||||||||||||||| Sbjct: 190731 caggccaggtttcaccttcac 190751
>dbj|AB017638.1| Rattus norvegicus mRNA for prostasin precursor, complete cds Length = 2208 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 169 caggccaggtttcaccttcac 189 ||||||||||||||||||||| Sbjct: 2072 caggccaggtttcaccttcac 2092
>gb|AY789051.1| Populus tomentosa ascorbate peroxidase mRNA, complete cds Length = 969 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 gtttcaccttcacttcctcg 196 |||||||||||||||||||| Sbjct: 272 gtttcaccttcacttcctcg 253
>gb|AE009222.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 248 of 256 of the complete sequence Length = 12589 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 caggccactgatccagttcg 448 |||||||||||||||||||| Sbjct: 4522 caggccactgatccagttcg 4503
>gb|AC011296.3| Homo sapiens BAC clone RP11-96K1 from 7, complete sequence Length = 130513 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 ggcgtccaccttccccttgg 259 |||||||||||||||||||| Sbjct: 75400 ggcgtccaccttccccttgg 75381
>emb|AL606970.12| Human DNA sequence from clone RP11-503C24 on chromosome 6 Contains the 3' end of a novel gene, up to five novel genes, (inclusing FLJ31232 and pp13671), a meningioma expressed antigen 6 (coiled-coil proline-rich) (MGEA6) pseudogene and three CpG islands, complete sequence Length = 161863 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 gtattatctgtttaaatatt 33 |||||||||||||||||||| Sbjct: 130917 gtattatctgtttaaatatt 130936
>emb|AL446024.12| Human DNA sequence from clone RP11-61N16 on chromosome 9 Contains two olfactory receptor pseudogenes, complete sequence Length = 53403 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 292 taactctcaccccacacctt 311 |||||||||||||||||||| Sbjct: 25329 taactctcaccccacacctt 25310
>gb|AC119567.11| Homo sapiens X BAC RP11-416J16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 79556 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 atatccactgctacagtttt 150 |||||||||||||||||||| Sbjct: 70341 atatccactgctacagtttt 70322
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome Length = 2841581 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 caggccactgatccagttcg 448 |||||||||||||||||||| Sbjct: 2746547 caggccactgatccagttcg 2746528
>gb|AC021582.13| Homo sapiens chromosome 9, clone RP11-687K5, complete sequence Length = 199612 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 292 taactctcaccccacacctt 311 |||||||||||||||||||| Sbjct: 142714 taactctcaccccacacctt 142695
>gb|AC021581.10| Homo sapiens chromosome 17, clone RP11-956N15, complete sequence Length = 181607 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 taactctcaccccacacctt 311 |||||||||||||||||||| Sbjct: 174455 taactctcaccccacacctt 174474
>gb|AC010612.8| Homo sapiens chromosome 5 clone CTB-91C24, complete sequence Length = 139873 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 taactctcaccccacacctt 311 |||||||||||||||||||| Sbjct: 137198 taactctcaccccacacctt 137217
>gb|AC009220.10|AC009220 Homo sapiens chromosome 7 clone RP11-365F18, complete sequence Length = 184520 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 110 aaggttcttccattctaagccata 133 |||||| ||||||||||||||||| Sbjct: 178289 aaggttgttccattctaagccata 178312
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.7 Identities = 38/44 (86%) Strand = Plus / Minus Query: 361 tccaggtcccggtagttcacgtacgcacccctcgggttcttgct 404 |||||||||| |||||| | ||| ||| |||| ||||||||||| Sbjct: 7690910 tccaggtccctgtagttgatgtatgcagccctggggttcttgct 7690867
>gb|AC068717.5| Homo sapiens BAC clone RP11-13K9 from 4, complete sequence Length = 86748 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 atatccactgctacagtttt 150 |||||||||||||||||||| Sbjct: 32118 atatccactgctacagtttt 32099
>emb|AL929596.11| Zebrafish DNA sequence from clone DKEY-53H9, complete sequence Length = 191874 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 caggtttcaccttcacttcc 193 |||||||||||||||||||| Sbjct: 85639 caggtttcaccttcacttcc 85658
>dbj|AP003991.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1077_A12 Length = 149089 Score = 40.1 bits (20), Expect = 6.7 Identities = 38/44 (86%) Strand = Plus / Minus Query: 361 tccaggtcccggtagttcacgtacgcacccctcgggttcttgct 404 |||||||||| |||||| | ||| ||| |||| ||||||||||| Sbjct: 27175 tccaggtccctgtagttgatgtatgcagccctggggttcttgct 27132
>gb|AC005323.1|AC005323 Homo sapiens chromosome 17, clone hRPK.799_N_11, complete sequence Length = 204082 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 taaatattcatgttcatacc 45 |||||||||||||||||||| Sbjct: 36878 taaatattcatgttcatacc 36897
>gb|AC005284.1|AC005284 Homo sapiens chromosome 17, clone hRPK.795_F_17, complete sequence Length = 192802 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 atgtcctcagattatagaca 170 |||||||||||||||||||| Sbjct: 63255 atgtcctcagattatagaca 63236
>gb|U90208.1|PYU90208 Porphyra yezoensis RNA polymerase II largest subunit (rpb1) mRNA, partial cds Length = 5055 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 cggtagttcacgtacgcacc 389 |||||||||||||||||||| Sbjct: 4043 cggtagttcacgtacgcacc 4024 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,497,463 Number of Sequences: 3902068 Number of extensions: 3497463 Number of successful extensions: 75018 Number of sequences better than 10.0: 56 Number of HSP's better than 10.0 without gapping: 56 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 74772 Number of HSP's gapped (non-prelim): 237 length of query: 493 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 471 effective length of database: 17,147,199,772 effective search space: 8076331092612 effective search space used: 8076331092612 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)