ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart35e06 |
|---|---|
| Clone Library Name | barley_pub |
>EXB1A_MAIZE (P58738) Beta-expansin 1a precursor (Pollen allergen Zea m 1) (Zea| m I) Length = 269 Score = 43.5 bits (101), Expect = 1e-04 Identities = 17/31 (54%), Positives = 26/31 (83%) Frame = -3 Query: 383 VTNGSGRSLVADQVIPADWQPDTVYSSDVQF 291 +T+ SG+ ++A VIPA+W+PD VY+S+VQF Sbjct: 238 LTSESGKKVIAKDVIPANWRPDAVYTSNVQF 268
>EXB1B_MAIZE (Q07154) Beta-expansin 1b (Pollen allergen Zea m 1) (Zea m I)| (Fragment) Length = 191 Score = 43.1 bits (100), Expect = 2e-04 Identities = 16/31 (51%), Positives = 26/31 (83%) Frame = -3 Query: 383 VTNGSGRSLVADQVIPADWQPDTVYSSDVQF 291 +T+ SG+ ++A +IPA+W+PD VY+S+VQF Sbjct: 160 LTSESGKKVIAKDIIPANWRPDAVYTSNVQF 190
>MPAC1_CYNDA (O04701) Major pollen allergen Cyn d 1| Length = 246 Score = 42.7 bits (99), Expect = 2e-04 Identities = 18/31 (58%), Positives = 24/31 (77%) Frame = -3 Query: 383 VTNGSGRSLVADQVIPADWQPDTVYSSDVQF 291 +T+ G LV D VIPA+W+PDTVY+S +QF Sbjct: 214 LTSEGGAHLVQDDVIPANWKPDTVYTSKLQF 244
>EXPB2_ARATH (Q9SHY6) Putative beta-expansin 2 precursor (AtEXPB2) (At-EXPB2)| (Ath-ExpBeta-1.4) Length = 273 Score = 38.9 bits (89), Expect = 0.003 Identities = 15/27 (55%), Positives = 21/27 (77%) Frame = -3 Query: 371 SGRSLVADQVIPADWQPDTVYSSDVQF 291 SG+++VA VIPA+WQP +Y S+V F Sbjct: 247 SGKTVVASNVIPANWQPGAIYKSNVNF 273
>EXPB5_ARATH (Q9M203) Putative beta-expansin 5 precursor (AtEXPB5) (At-EXPB5)| (Ath-ExpBeta-1.3) Length = 264 Score = 31.6 bits (70), Expect = 0.48 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = -3 Query: 371 SGRSLVADQVIPADWQPDTVYSSDVQF 291 SG+ ++A VIP W P +Y S V F Sbjct: 231 SGKKIIAKGVIPEKWSPGAIYHSKVNF 257
>EXPB4_ARATH (Q9SHD1) Putative beta-expansin 4 precursor (AtEXPB4) (At-EXPB4)| (Ath-ExpBeta-1.1) Length = 259 Score = 31.2 bits (69), Expect = 0.63 Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 1/32 (3%) Frame = -3 Query: 383 VTNG-SGRSLVADQVIPADWQPDTVYSSDVQF 291 +T+G S + +VA VIPA+W+PD Y S V F Sbjct: 228 LTSGESHKVIVAYNVIPANWKPDESYRSIVNF 259
>BGAL_SULSO (P22498) Beta-galactosidase (EC 3.2.1.23) (Lactase)| Length = 489 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/48 (31%), Positives = 24/48 (50%) Frame = +1 Query: 160 VAHDEDLHRKSQATSQLYSLAQKIHAGMDVRACLPWIIGRDHSSNWTS 303 +A D D R S +Y + + I++G DVR L W + ++ W S Sbjct: 390 IADDADYQRPYYLVSHVYQVHRAINSGADVRGYLHWSLADNY--EWAS 435
>BGAL_SULSH (P50388) Beta-galactosidase (EC 3.2.1.23) (Lactase)| Length = 489 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/48 (31%), Positives = 24/48 (50%) Frame = +1 Query: 160 VAHDEDLHRKSQATSQLYSLAQKIHAGMDVRACLPWIIGRDHSSNWTS 303 +A D D R S +Y + + I++G DVR L W + ++ W S Sbjct: 390 IADDADYQRPYYLVSHVYQVHRAINSGADVRGYLHWSLADNY--EWAS 435
>BGAL_SULAC (P14288) Beta-galactosidase (EC 3.2.1.23) (Lactase)| Length = 491 Score = 30.4 bits (67), Expect = 1.1 Identities = 14/48 (29%), Positives = 25/48 (52%) Frame = +1 Query: 160 VAHDEDLHRKSQATSQLYSLAQKIHAGMDVRACLPWIIGRDHSSNWTS 303 +A D D R S +Y + + ++ G+DVR L W + ++ W+S Sbjct: 392 IADDADYQRPYYLVSHIYQVHRALNEGVDVRGYLHWSLADNY--EWSS 437
>EXPB3_ARATH (Q9M0I2) Beta-expansin 3 precursor (AtEXPB3) (At-EXPB3)| (Ath-ExpBeta-1.6) Length = 264 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = -3 Query: 380 TNGSGRSLVADQVIPADWQPDTVYSSDVQF 291 T +G++L A V+P +W P YSS + F Sbjct: 231 TLSAGKTLSATDVVPRNWAPKATYSSRLNF 260
>YAY3_SCHPO (Q10211) Hypothetical protein C4H3.03c in chromosome I| Length = 649 Score = 30.4 bits (67), Expect = 1.1 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%) Frame = +3 Query: 63 CGQY--ILLAAYSRSHKLIKAATYVMYYVYICSLGSTRRGLAPEVTGDVSAI 212 C Y +L A S L++ ++++ YY CSL S G +P+ ++AI Sbjct: 582 CSGYPKLLSTAVSMFEDLVRYSSHLQYYSEECSLSSESLGNSPQAFSSIAAI 633
>SLIT3_RAT (O88280) Slit homolog 3 protein precursor (Slit-3) (Multiple| epidermal growth factor-like domains 5) Length = 1523 Score = 29.6 bits (65), Expect = 1.8 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = +3 Query: 225 KNPCRHGRTCMPSMDHRTG 281 +NPC+HG TC S HR G Sbjct: 961 QNPCQHGGTCHLSESHRDG 979
>ATBF1_HUMAN (Q15911) Alpha-fetoprotein enhancer-binding protein (AT| motif-binding factor) (AT-binding transcription factor 1) Length = 3703 Score = 28.9 bits (63), Expect = 3.1 Identities = 16/45 (35%), Positives = 19/45 (42%) Frame = +1 Query: 61 AAGNIYYSLPTPDPTN*LRLPRMLCTTCTYVA*VAHDEDLHRKSQ 195 AA NI S P PT P C C Y VA + +H S+ Sbjct: 782 AAANISSSCGAPSPTKPKTKPTWRCEVCDYETNVARNLRIHMTSE 826
>LST_HAEIN (Q48211) CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,| 3-sialyltransferase (EC 2.4.99.-) (Beta-galactoside alpha-2,3-sialyltransferase) (Alpha 2,3-ST) (Lipooligosaccharide sialyltransferase) Length = 304 Score = 28.9 bits (63), Expect = 3.1 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = -3 Query: 311 YSSDVQFDE*SRPMIHGRHARTSMPAWIFC 222 + S V F+ S P + R RTS+P W FC Sbjct: 260 FFSSVAFNLLSHPNVEIRFIRTSIPRWQFC 289
>LIPR2_HUMAN (P54317) Pancreatic lipase-related protein 2 precursor (EC 3.1.1.3)| Length = 469 Score = 28.9 bits (63), Expect = 3.1 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 6/74 (8%) Frame = -3 Query: 326 QPDTVYSSDVQFDE*SRPMIHG--RHARTSMPAWIFCAKLYS*D----VACDFRCKSSSC 165 +PDT+ +S+ Q D +R +IHG A S P+ C K++ + + D+R S Sbjct: 74 EPDTIEASNFQLDRKTRFIIHGFLDKAEDSWPS-DMCKKMFEVEKVNCICVDWRHGSR-- 130 Query: 164 AT*ATYVHVVHNIR 123 A Y V NIR Sbjct: 131 ---AMYTQAVQNIR 141
>ASNS1_PEA (P19251) Asparagine synthetase, nodule [glutamine-hydrolyzing] (EC| 6.3.5.4) (Glutamine-dependent asparagine synthetase) Length = 585 Score = 28.5 bits (62), Expect = 4.1 Identities = 10/27 (37%), Positives = 17/27 (62%) Frame = -1 Query: 232 GFFVPSYIAETSPVTSGASPRRVLPKL 152 G V +Y + +PVT G P +++PK+ Sbjct: 548 GVHVSAYEHQINPVTKGVEPEKIIPKI 574
>MYSP1_DROME (P35415) Paramyosin, long form| Length = 879 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/28 (46%), Positives = 20/28 (71%) Frame = +1 Query: 163 AHDEDLHRKSQATSQLYSLAQKIHAGMD 246 AH ED+ R+ QAT Y++AQ+ AG++ Sbjct: 585 AHYEDVQRQLQATLDQYAVAQRRLAGLN 612
>MYSP2_DROME (P35416) Paramyosin, short form (Miniparamyosin)| Length = 640 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/28 (46%), Positives = 20/28 (71%) Frame = +1 Query: 163 AHDEDLHRKSQATSQLYSLAQKIHAGMD 246 AH ED+ R+ QAT Y++AQ+ AG++ Sbjct: 346 AHYEDVQRQLQATLDQYAVAQRRLAGLN 373
>EXP11_ARATH (Q9LNU3) Alpha-expansin 11 precursor (AtEXPA11) (At-EXP11) (AtEx11)| (Ath-ExpAlpha-1.14) Length = 252 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = -3 Query: 383 VTNGSGRSLVADQVIPADWQPDTVYSSDVQF 291 +T G + V V+P+ W +YSS+VQF Sbjct: 222 ITTTDGATRVFLNVVPSSWSFGQIYSSNVQF 252
>SLIT3_HUMAN (O75094) Slit homolog 3 protein precursor (Slit-3) (Multiple| epidermal growth factor-like domains 5) Length = 1523 Score = 28.1 bits (61), Expect = 5.4 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = +3 Query: 225 KNPCRHGRTCMPSMDHRTG 281 +NPC+HG TC S H+ G Sbjct: 961 QNPCQHGGTCHLSDSHKDG 979
>HDAC_MAIZE (P56521) Probable histone deacetylase (RPD3 homolog)| Length = 513 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/47 (29%), Positives = 24/47 (51%) Frame = +1 Query: 208 LYSLAQKIHAGMDVRACLPWIIGRDHSSNWTSELYTVSGCQSAGMTW 348 LYS Q +AG V + + G D + NW+ L+ C+++G + Sbjct: 120 LYSFCQT-YAGASVGGAVKFNHGHDIAINWSGGLHHAKKCEASGFCY 165
>ATBF1_MOUSE (Q61329) Alpha-fetoprotein enhancer-binding protein (AT| motif-binding factor) (AT-binding transcription factor 1) Length = 3726 Score = 28.1 bits (61), Expect = 5.4 Identities = 16/45 (35%), Positives = 19/45 (42%) Frame = +1 Query: 61 AAGNIYYSLPTPDPTN*LRLPRMLCTTCTYVA*VAHDEDLHRKSQ 195 AA NI S P PT P C C Y VA + +H S+ Sbjct: 783 AAANIGSSWGAPSPTKPKTKPTWRCEVCDYETNVARNLRIHMTSE 827
>EXPB1_ARATH (Q9SKU2) Beta-expansin 1 precursor (AtEXPB1) (At-EXPB1)| (Ath-ExpBeta-1.5) Length = 271 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/30 (36%), Positives = 18/30 (60%) Frame = -3 Query: 380 TNGSGRSLVADQVIPADWQPDTVYSSDVQF 291 T + ++L A VIP++W P Y+S + F Sbjct: 238 TLSNNKTLSATDVIPSNWVPKATYTSRLNF 267
>EXPA8_ARATH (O22874) Alpha-expansin 8 precursor (AtEXPA8) (At-EXP8) (AtEx8)| (Ath-ExpAlpha-1.11) Length = 253 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/25 (44%), Positives = 16/25 (64%) Frame = -3 Query: 383 VTNGSGRSLVADQVIPADWQPDTVY 309 VT GR+LV++ V P++WQ Y Sbjct: 224 VTTSDGRTLVSNDVAPSNWQFGQTY 248
>NELFD_DROME (Q24134) Negative elongation factor D| Length = 578 Score = 27.7 bits (60), Expect = 7.0 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 7/57 (12%) Frame = -1 Query: 250 VRPCLHGFFVPSYIAETSPVT-------SGASPRRVLPKLHMYT*YITYVAALISLW 101 ++ CL F P YI E T SG SP V+ L + +A L++ W Sbjct: 32 IQECLEKFLTPDYIMEPGIFTQLKRYFQSGGSPEEVISMLSENYKAVAQMANLLAEW 88
>OE66_NPVLD (Q90115) Occlusion-derived virus envelope protein E66 (ODV-E66)| (Fragment) Length = 664 Score = 27.7 bits (60), Expect = 7.0 Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 16/91 (17%) Frame = +1 Query: 55 FIAAGNIYYSLPTPDPTN-------------*LRLPRMLCTTCTYVA*VAHDEDLHR--- 186 + A +YY+LP P P N + +P + TC + D+ R Sbjct: 108 YAAIVELYYNLPFPAPVNQAPWGAQADWYHFSITMPECVQNTCIALRGFYDLSDIARAII 167 Query: 187 KSQATSQLYSLAQKIHAGMDVRACLPWIIGR 279 + + +SL + AG +R CLP+ G+ Sbjct: 168 DAYLPAPTFSLGWQRTAGNAMRMCLPYCYGQ 198
>PGBM_HUMAN (P98160) Basement membrane-specific heparan sulfate proteoglycan core| protein precursor (HSPG) (Perlecan) (PLC) Length = 4391 Score = 27.7 bits (60), Expect = 7.0 Identities = 8/16 (50%), Positives = 13/16 (81%) Frame = +3 Query: 225 KNPCRHGRTCMPSMDH 272 + PC+HG TCMP+ ++ Sbjct: 4110 RQPCQHGATCMPAGEY 4125
>EXPA2_ARATH (Q38866) Alpha-expansin 2 precursor (AtEXPA2) (At-EXP2) (AtEx2)| (Ath-ExpAlpha-1.12) Length = 255 Score = 27.3 bits (59), Expect = 9.1 Identities = 10/20 (50%), Positives = 15/20 (75%) Frame = -3 Query: 383 VTNGSGRSLVADQVIPADWQ 324 VT+ GR++V+ V+P DWQ Sbjct: 226 VTDSDGRTVVSYDVVPHDWQ 245
>BMP2K_HUMAN (Q9NSY1) BMP-2-inducible protein kinase (EC 2.7.11.1) (BIKe)| Length = 1161 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +3 Query: 219 GTKNPCRHGRTCMPSMDHRTG 281 GT NP ++G+T S D RTG Sbjct: 704 GTANPIKNGKTSPASKDQRTG 724
>NOTC4_HUMAN (Q99466) Neurogenic locus notch homolog protein 4 precursor (Notch| 4) (hNotch4) [Contains: Notch 4 extracellular truncation; Notch 4 intracellular domain] Length = 2003 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/38 (36%), Positives = 18/38 (47%) Frame = +3 Query: 147 ICSLGSTRRGLAPEVTGDVSAI*LGTKNPCRHGRTCMP 260 +C +G T E+ G +SA PC HG TC P Sbjct: 678 VCDVGWTGPECEAELGGCISA-------PCAHGGTCYP 708
>FADL_SHIFL (P59741) Long-chain fatty acid transport protein precursor (Outer| membrane fadL protein) (Outer membrane flp protein) Length = 448 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = -3 Query: 380 TNGSGRSLVADQVIPADWQPD 318 T+ SGRSL AD + P W P+ Sbjct: 88 TSPSGRSLKADNIAPTAWVPN 108
>FADL_ECOLI (P10384) Long-chain fatty acid transport protein precursor (Outer| membrane fadL protein) (Outer membrane flp protein) Length = 448 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = -3 Query: 380 TNGSGRSLVADQVIPADWQPD 318 T+ SGRSL AD + P W P+ Sbjct: 88 TSPSGRSLKADNIAPTAWVPN 108
>FADL_ECO57 (Q8XCN6) Long-chain fatty acid transport protein precursor (Outer| membrane fadL protein) (Outer membrane flp protein) Length = 448 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = -3 Query: 380 TNGSGRSLVADQVIPADWQPD 318 T+ SGRSL AD + P W P+ Sbjct: 88 TSPSGRSLKADNIAPTAWVPN 108
>HMCT_HELPY (Q59465) Cadmium, zinc and cobalt-transporting ATPase (EC 3.6.3.3)| (EC 3.6.3.5) Length = 686 Score = 27.3 bits (59), Expect = 9.1 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Frame = +3 Query: 57 YSCGQYILLAAYSRSHKLIKAATYVMYYVYICSLGSTRRGLAPE--VTGDVSAI*LGTKN 230 YS G+++ A SRS K +KA V + G +APE D+ + +G K Sbjct: 162 YSAGEFLQKLAVSRSKKSLKALVDVAPNLAYLKKGDELVSVAPEDLRVNDIVVVKVGEKV 221 Query: 231 P 233 P Sbjct: 222 P 222 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,904,048 Number of Sequences: 219361 Number of extensions: 1107876 Number of successful extensions: 2584 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 2389 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2583 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 1391514312 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
