ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart35e03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DCAM_HORCH (Q42829) S-adenosylmethionine decarboxylase proenzyme... 181 9e-46
2DCAM_ORYSA (O24215) S-adenosylmethionine decarboxylase proenzyme... 124 2e-28
3DCAM_MAIZE (O24575) S-adenosylmethionine decarboxylase proenzyme... 123 2e-28
4DCAM_VICFA (Q9M4D8) S-adenosylmethionine decarboxylase proenzyme... 36 0.064
5DCAM_IPOBA (Q9M6K1) S-adenosylmethionine decarboxylase proenzyme... 34 0.24
6DCAM_PEA (Q43820) S-adenosylmethionine decarboxylase proenzyme (... 33 0.32
7DCAM_IPONI (Q96471) S-adenosylmethionine decarboxylase proenzyme... 33 0.54
8NEUA_RAT (P69060) N-acylneuraminate cytidylyltransferase (EC 2.7... 29 6.0
9NEUA_MOUSE (Q99KK2) N-acylneuraminate cytidylyltransferase (EC 2... 29 6.0
10BSL3_ARATH (Q9SHS7) Serine/threonine-protein phosphatase BSL3 (E... 29 7.8
11DPYS_HUMAN (Q14117) Dihydropyrimidinase (EC 3.5.2.2) (DHPase) (H... 29 7.8
12SMI1_YARLI (Q6CDX0) KNR4/SMI1 homolog 29 7.8

>DCAM_HORCH (Q42829) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 393

 Score =  181 bits (459), Expect = 9e-46
 Identities = 89/98 (90%), Positives = 93/98 (94%), Gaps = 2/98 (2%)
 Frame = -1

Query: 494 GRGHAATWGKKLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEG 315
           GRGHAATWGKKLDAEAYDCNN+VEQELPCGGVLIYQSF ANEE+AVSAGSPRSVFHCF  
Sbjct: 298 GRGHAATWGKKLDAEAYDCNNVVEQELPCGGVLIYQSFAANEELAVSAGSPRSVFHCF-- 355

Query: 314 ENVESGHPLVKEGKLANLLAWRAEEDSLEE--GAVLCE 207
           ENVESGHPLVKEGKLANLLAWRAEE+SLEE  GA+LCE
Sbjct: 356 ENVESGHPLVKEGKLANLLAWRAEEESLEEGTGALLCE 393



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>DCAM_ORYSA (O24215) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 398

 Score =  124 bits (310), Expect = 2e-28
 Identities = 60/90 (66%), Positives = 71/90 (78%)
 Frame = -1

Query: 494 GRGHAATWGKKLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEG 315
           G GHA TW K+L+A+AY CNN+VEQELPCGG+LIYQSF A E+V V+ GSP+SV HCFE 
Sbjct: 305 GHGHAGTWAKELNADAYKCNNMVEQELPCGGLLIYQSFDATEDVPVAVGSPKSVLHCFEA 364

Query: 314 ENVESGHPLVKEGKLANLLAWRAEEDSLEE 225
           EN+ +  P VKEGKL NLL W   ED+LEE
Sbjct: 365 ENMVNPAP-VKEGKLGNLLPW--GEDALEE 391



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>DCAM_MAIZE (O24575) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 400

 Score =  123 bits (309), Expect = 2e-28
 Identities = 61/93 (65%), Positives = 71/93 (76%), Gaps = 1/93 (1%)
 Frame = -1

Query: 494 GRGHAATWGKKLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEG 315
           GRGHA TWGK L AE YDCNN+VEQELP GG+L+YQSF A E+    A SP+SVFHCF+G
Sbjct: 305 GRGHAGTWGKALGAEVYDCNNMVEQELPGGGLLVYQSFCAAEDAV--ATSPKSVFHCFDG 362

Query: 314 ENVESG-HPLVKEGKLANLLAWRAEEDSLEEGA 219
           ENVES   P+ K+ KLANLL W  E D++EE A
Sbjct: 363 ENVESAPPPMKKDYKLANLLCWEEEADAMEEKA 395



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>DCAM_VICFA (Q9M4D8) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 353

 Score = 35.8 bits (81), Expect = 0.064
 Identities = 20/56 (35%), Positives = 27/56 (48%)
 Frame = -1

Query: 470 GKKLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGENVE 303
           G  LD + Y C+    Q L   G ++YQ F      A   GSPRS   C++ E+ E
Sbjct: 301 GCLLDVKGYCCDEKSHQGLGMSGSVVYQKFVK----ASDCGSPRSTLKCWKDEDEE 352



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>DCAM_IPOBA (Q9M6K1) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 362

 Score = 33.9 bits (76), Expect = 0.24
 Identities = 20/52 (38%), Positives = 25/52 (48%)
 Frame = -1

Query: 464 KLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGEN 309
           KLD + Y C     + L  GG ++Y  FT+      S GSPRS   C   EN
Sbjct: 305 KLDVKGYACGERSYEGLNKGGSIMYCGFTSTG----SCGSPRSTLLCCWSEN 352



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>DCAM_PEA (Q43820) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 353

 Score = 33.5 bits (75), Expect = 0.32
 Identities = 19/56 (33%), Positives = 25/56 (44%)
 Frame = -1

Query: 470 GKKLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGENVE 303
           G  LD + Y C     Q L   G ++YQ F          GSPRS   C++ E+ E
Sbjct: 301 GCLLDVKGYCCEEKSHQGLGMSGSVVYQKFLKTS----YCGSPRSTLKCWKDEDEE 352



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>DCAM_IPONI (Q96471) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 362

 Score = 32.7 bits (73), Expect = 0.54
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = -1

Query: 464 KLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGEN 309
           +LD + Y C     + L  GG ++Y  FT+      S GSPRS   C   EN
Sbjct: 305 ELDVKGYACGERSYEALGKGGSIMYCGFTSTG----SCGSPRSTLLCCWSEN 352



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>NEUA_RAT (P69060) N-acylneuraminate cytidylyltransferase (EC 2.7.7.43)|
           (CMP-N-acetylneuraminic acid synthetase) (CMP-NeuNAc
           synthetase)
          Length = 432

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = -3

Query: 492 PRPRRHLGQEARRRGIRLQQHRGAGAPLRGRPHLPEL 382
           P PR   G+ +R R  +LQ+ RGAG  L   PHL  L
Sbjct: 13  PAPR---GRPSRGRPPKLQRSRGAGRGLEKPPHLAAL 46



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>NEUA_MOUSE (Q99KK2) N-acylneuraminate cytidylyltransferase (EC 2.7.7.43)|
           (CMP-N-acetylneuraminic acid synthetase) (CMP-NeuNAc
           synthetase)
          Length = 432

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = -3

Query: 492 PRPRRHLGQEARRRGIRLQQHRGAGAPLRGRPHLPEL 382
           P PR   G+ +R R  +LQ+ RGAG  L   PHL  L
Sbjct: 13  PAPR---GRPSRGRPPKLQRSRGAGRGLEKPPHLAAL 46



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>BSL3_ARATH (Q9SHS7) Serine/threonine-protein phosphatase BSL3 (EC 3.1.3.16)|
           (BSU1-like protein 3)
          Length = 715

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 30/99 (30%), Positives = 37/99 (37%), Gaps = 7/99 (7%)
 Frame = +3

Query: 204 SLAQHRALLQRILLRPPCEQVGKLAFLDQRVAALHILALEAVEDG-----PGRPGGDSNL 368
           S A H A        PP    G+  F D+R   L   A +AV  G     P  P G  +L
Sbjct: 301 SAASHAAAAAAATNTPPGRSPGRYGFSDERTGELPESAPDAVVLGSPVAPPATPSGKPSL 360

Query: 369 FI--RGKALVDEDAPAGELLLHDVVAVVCLGVELLAPGG 479
            +     A+ +   PAG  L H  V        LL P G
Sbjct: 361 SLIKPDSAVPNSVIPAGVRLHHRAV------THLLKPRG 393



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>DPYS_HUMAN (Q14117) Dihydropyrimidinase (EC 3.5.2.2) (DHPase) (Hydantoinase)|
           (DHP)
          Length = 519

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +3

Query: 360 SNLFIRGKALVDED-APAGELLLHDVVAVVCLGVELLAPGGGVA 488
           S L IRG  +V++D +   ++L+ D V V  LG +LL PGG  A
Sbjct: 5   SRLLIRGGRVVNDDFSEVADVLVEDGV-VRALGHDLLPPGGAPA 47



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>SMI1_YARLI (Q6CDX0) KNR4/SMI1 homolog|
          Length = 713

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -1

Query: 356 SAGSPRSVFHCFEGENVESGHPLVKEGKLANLLAWRAEEDSLEEGAV 216
           +AGSP S            G P+    +  N+ +W A +DS+ EGAV
Sbjct: 260 NAGSPNSS---------TPGSPVASVARQKNISSWLASQDSVPEGAV 297


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,201,292
Number of Sequences: 219361
Number of extensions: 1192890
Number of successful extensions: 3744
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3740
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3465624120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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