Clone Name | rbart35e03 |
---|---|
Clone Library Name | barley_pub |
>DCAM_HORCH (Q42829) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 393 Score = 181 bits (459), Expect = 9e-46 Identities = 89/98 (90%), Positives = 93/98 (94%), Gaps = 2/98 (2%) Frame = -1 Query: 494 GRGHAATWGKKLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEG 315 GRGHAATWGKKLDAEAYDCNN+VEQELPCGGVLIYQSF ANEE+AVSAGSPRSVFHCF Sbjct: 298 GRGHAATWGKKLDAEAYDCNNVVEQELPCGGVLIYQSFAANEELAVSAGSPRSVFHCF-- 355 Query: 314 ENVESGHPLVKEGKLANLLAWRAEEDSLEE--GAVLCE 207 ENVESGHPLVKEGKLANLLAWRAEE+SLEE GA+LCE Sbjct: 356 ENVESGHPLVKEGKLANLLAWRAEEESLEEGTGALLCE 393
>DCAM_ORYSA (O24215) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 398 Score = 124 bits (310), Expect = 2e-28 Identities = 60/90 (66%), Positives = 71/90 (78%) Frame = -1 Query: 494 GRGHAATWGKKLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEG 315 G GHA TW K+L+A+AY CNN+VEQELPCGG+LIYQSF A E+V V+ GSP+SV HCFE Sbjct: 305 GHGHAGTWAKELNADAYKCNNMVEQELPCGGLLIYQSFDATEDVPVAVGSPKSVLHCFEA 364 Query: 314 ENVESGHPLVKEGKLANLLAWRAEEDSLEE 225 EN+ + P VKEGKL NLL W ED+LEE Sbjct: 365 ENMVNPAP-VKEGKLGNLLPW--GEDALEE 391
>DCAM_MAIZE (O24575) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 400 Score = 123 bits (309), Expect = 2e-28 Identities = 61/93 (65%), Positives = 71/93 (76%), Gaps = 1/93 (1%) Frame = -1 Query: 494 GRGHAATWGKKLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEG 315 GRGHA TWGK L AE YDCNN+VEQELP GG+L+YQSF A E+ A SP+SVFHCF+G Sbjct: 305 GRGHAGTWGKALGAEVYDCNNMVEQELPGGGLLVYQSFCAAEDAV--ATSPKSVFHCFDG 362 Query: 314 ENVESG-HPLVKEGKLANLLAWRAEEDSLEEGA 219 ENVES P+ K+ KLANLL W E D++EE A Sbjct: 363 ENVESAPPPMKKDYKLANLLCWEEEADAMEEKA 395
>DCAM_VICFA (Q9M4D8) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 353 Score = 35.8 bits (81), Expect = 0.064 Identities = 20/56 (35%), Positives = 27/56 (48%) Frame = -1 Query: 470 GKKLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGENVE 303 G LD + Y C+ Q L G ++YQ F A GSPRS C++ E+ E Sbjct: 301 GCLLDVKGYCCDEKSHQGLGMSGSVVYQKFVK----ASDCGSPRSTLKCWKDEDEE 352
>DCAM_IPOBA (Q9M6K1) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 362 Score = 33.9 bits (76), Expect = 0.24 Identities = 20/52 (38%), Positives = 25/52 (48%) Frame = -1 Query: 464 KLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGEN 309 KLD + Y C + L GG ++Y FT+ S GSPRS C EN Sbjct: 305 KLDVKGYACGERSYEGLNKGGSIMYCGFTSTG----SCGSPRSTLLCCWSEN 352
>DCAM_PEA (Q43820) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 353 Score = 33.5 bits (75), Expect = 0.32 Identities = 19/56 (33%), Positives = 25/56 (44%) Frame = -1 Query: 470 GKKLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGENVE 303 G LD + Y C Q L G ++YQ F GSPRS C++ E+ E Sbjct: 301 GCLLDVKGYCCEEKSHQGLGMSGSVVYQKFLKTS----YCGSPRSTLKCWKDEDEE 352
>DCAM_IPONI (Q96471) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 362 Score = 32.7 bits (73), Expect = 0.54 Identities = 19/52 (36%), Positives = 25/52 (48%) Frame = -1 Query: 464 KLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGEN 309 +LD + Y C + L GG ++Y FT+ S GSPRS C EN Sbjct: 305 ELDVKGYACGERSYEALGKGGSIMYCGFTSTG----SCGSPRSTLLCCWSEN 352
>NEUA_RAT (P69060) N-acylneuraminate cytidylyltransferase (EC 2.7.7.43)| (CMP-N-acetylneuraminic acid synthetase) (CMP-NeuNAc synthetase) Length = 432 Score = 29.3 bits (64), Expect = 6.0 Identities = 17/37 (45%), Positives = 21/37 (56%) Frame = -3 Query: 492 PRPRRHLGQEARRRGIRLQQHRGAGAPLRGRPHLPEL 382 P PR G+ +R R +LQ+ RGAG L PHL L Sbjct: 13 PAPR---GRPSRGRPPKLQRSRGAGRGLEKPPHLAAL 46
>NEUA_MOUSE (Q99KK2) N-acylneuraminate cytidylyltransferase (EC 2.7.7.43)| (CMP-N-acetylneuraminic acid synthetase) (CMP-NeuNAc synthetase) Length = 432 Score = 29.3 bits (64), Expect = 6.0 Identities = 17/37 (45%), Positives = 21/37 (56%) Frame = -3 Query: 492 PRPRRHLGQEARRRGIRLQQHRGAGAPLRGRPHLPEL 382 P PR G+ +R R +LQ+ RGAG L PHL L Sbjct: 13 PAPR---GRPSRGRPPKLQRSRGAGRGLEKPPHLAAL 46
>BSL3_ARATH (Q9SHS7) Serine/threonine-protein phosphatase BSL3 (EC 3.1.3.16)| (BSU1-like protein 3) Length = 715 Score = 28.9 bits (63), Expect = 7.8 Identities = 30/99 (30%), Positives = 37/99 (37%), Gaps = 7/99 (7%) Frame = +3 Query: 204 SLAQHRALLQRILLRPPCEQVGKLAFLDQRVAALHILALEAVEDG-----PGRPGGDSNL 368 S A H A PP G+ F D+R L A +AV G P P G +L Sbjct: 301 SAASHAAAAAAATNTPPGRSPGRYGFSDERTGELPESAPDAVVLGSPVAPPATPSGKPSL 360 Query: 369 FI--RGKALVDEDAPAGELLLHDVVAVVCLGVELLAPGG 479 + A+ + PAG L H V LL P G Sbjct: 361 SLIKPDSAVPNSVIPAGVRLHHRAV------THLLKPRG 393
>DPYS_HUMAN (Q14117) Dihydropyrimidinase (EC 3.5.2.2) (DHPase) (Hydantoinase)| (DHP) Length = 519 Score = 28.9 bits (63), Expect = 7.8 Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%) Frame = +3 Query: 360 SNLFIRGKALVDED-APAGELLLHDVVAVVCLGVELLAPGGGVA 488 S L IRG +V++D + ++L+ D V V LG +LL PGG A Sbjct: 5 SRLLIRGGRVVNDDFSEVADVLVEDGV-VRALGHDLLPPGGAPA 47
>SMI1_YARLI (Q6CDX0) KNR4/SMI1 homolog| Length = 713 Score = 28.9 bits (63), Expect = 7.8 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = -1 Query: 356 SAGSPRSVFHCFEGENVESGHPLVKEGKLANLLAWRAEEDSLEEGAV 216 +AGSP S G P+ + N+ +W A +DS+ EGAV Sbjct: 260 NAGSPNSS---------TPGSPVASVARQKNISSWLASQDSVPEGAV 297 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,201,292 Number of Sequences: 219361 Number of extensions: 1192890 Number of successful extensions: 3744 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 3650 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3740 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3465624120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)