Clone Name | rbart35e02 |
---|---|
Clone Library Name | barley_pub |
>HSBH1_SOYBN (P46608) Homeobox protein SBH1| Length = 379 Score = 37.4 bits (85), Expect = 0.027 Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 6/79 (7%) Frame = +1 Query: 112 SIQHESNHNHNTTQNHDELA*Y**HNHTSLGWILTYCTQTFYSSELTDRHHIHHSENHMD 291 SI +NHN+N T + D +N+T LG +Y E +D HH HH N+ + Sbjct: 70 SIMLHNNHNNNKTDDDDN------NNNTGLG---------YYFME-SDHHHHHHGNNNNN 113 Query: 292 GNCSCRSQET------AHP 330 G+ S S AHP Sbjct: 114 GSSSSSSSSAVKAKIMAHP 132
>SECA_PEA (Q41062) Preprotein translocase secA subunit, chloroplast precursor| Length = 1011 Score = 33.1 bits (74), Expect = 0.50 Identities = 20/62 (32%), Positives = 30/62 (48%) Frame = -2 Query: 534 VGFADVTAAKSLEEKLKASGVAHEVHIYPGCSHAFMNASPEALERRKGMGLTDENQGAID 355 VG V + SL ++LK +G+ HEV +NA PE +ER + GA+ Sbjct: 497 VGTTSVEQSDSLSQQLKEAGILHEV----------LNAKPENVEREAEIVAQSGRLGAVT 546 Query: 354 LA 349 +A Sbjct: 547 IA 548
>KNOB_PLAFG (P09346) Knob-associated histidine-rich protein precursor (KAHRP)| (KP) Length = 634 Score = 32.7 bits (73), Expect = 0.66 Identities = 16/56 (28%), Positives = 24/56 (42%) Frame = +1 Query: 118 QHESNHNHNTTQNHDELA*Y**HNHTSLGWILTYCTQTFYSSELTDRHHIHHSENH 285 QHE +H+H+ H A + H+H G + Q D+ H HH +H Sbjct: 60 QHEHHHHHHHQHQHQHQAPHQAHHHHHHGEVNHQAPQVHQQVHGQDQAHHHHHHHH 115
>KNOB_PLAFA (P13817) Knob-associated histidine-rich protein precursor (KAHRP)| (HRPI) (Fragment) Length = 473 Score = 32.7 bits (73), Expect = 0.66 Identities = 16/56 (28%), Positives = 24/56 (42%) Frame = +1 Query: 118 QHESNHNHNTTQNHDELA*Y**HNHTSLGWILTYCTQTFYSSELTDRHHIHHSENH 285 QHE +H+H+ H A + H+H G + Q D+ H HH +H Sbjct: 60 QHEHHHHHHHQHQHQHQAPHQAHHHHHHGEVNHQAPQVHQQVHGQDQAHHHHHHHH 115
>SECA_SPIOL (Q36795) Preprotein translocase secA subunit, chloroplast precursor| Length = 1036 Score = 31.2 bits (69), Expect = 1.9 Identities = 19/62 (30%), Positives = 30/62 (48%) Frame = -2 Query: 534 VGFADVTAAKSLEEKLKASGVAHEVHIYPGCSHAFMNASPEALERRKGMGLTDENQGAID 355 VG V ++SL E+L+ + + HEV +NA PE +ER + GA+ Sbjct: 519 VGTTSVEQSESLSEQLQQASIPHEV----------LNAKPENVEREAEIVAQSGRLGAVT 568 Query: 354 LA 349 +A Sbjct: 569 IA 570
>HXB3_HUMAN (P14651) Homeobox protein Hox-B3 (Hox-2G) (Hox-2.7)| Length = 431 Score = 31.2 bits (69), Expect = 1.9 Identities = 14/46 (30%), Positives = 21/46 (45%) Frame = +1 Query: 265 IHHSENHMDGNCSCRSQETAHPSGEAGPCQVNGSLILISQTHALPP 402 ++H +H GN PS GPC+ + + +S HA PP Sbjct: 373 LNHLSHHPSGNLDYNGAPPMAPSQHHGPCEPHPTYTDLSSHHAPPP 418
>GCVK_HCMVT (Q68101) Phosphotransferase UL97 (EC 2.7.1.-) (Ganciclovir kinase)| Length = 707 Score = 30.8 bits (68), Expect = 2.5 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 1/47 (2%) Frame = +1 Query: 295 NCSCRSQETAHPSGEAGPCQVNGSLILISQTHALPPLEGLRR-CVHE 432 NCS R +E HP+ P Q +LI HA P+ GLRR C+ E Sbjct: 510 NCSHRLRECYHPAFRPMPLQ----KLLICDPHARFPVAGLRRYCMSE 552
>GCVK_HCMVA (P16788) Phosphotransferase UL97 (EC 2.7.1.-) (Ganciclovir kinase)| (HSRF3 protein) Length = 707 Score = 30.8 bits (68), Expect = 2.5 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 1/47 (2%) Frame = +1 Query: 295 NCSCRSQETAHPSGEAGPCQVNGSLILISQTHALPPLEGLRR-CVHE 432 NCS R +E HP+ P Q +LI HA P+ GLRR C+ E Sbjct: 510 NCSHRLRECYHPAFRPMPLQ----KLLICDPHARFPVAGLRRYCMSE 552
>OL56_STRAT (Q07017) Oleandomycin polyketide synthase, modules 5 and 6| Length = 3519 Score = 30.8 bits (68), Expect = 2.5 Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 2/60 (3%) Frame = +1 Query: 334 GEAGPCQVNG--SLILISQTHALPPLEGLRRCVHEGVGASRVYVDFMCHSRSLELLLQRL 507 G VNG S ++ AL L L C EGV A RV VD+ HS ++ L L Sbjct: 2368 GRVSVAAVNGPSSTVVSGDVQALDEL--LAGCEREGVRARRVPVDYASHSAQMDQLRDEL 2425 Score = 30.4 bits (67), Expect = 3.3 Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 2/60 (3%) Frame = +1 Query: 334 GEAGPCQVNG--SLILISQTHALPPLEGLRRCVHEGVGASRVYVDFMCHSRSLELLLQRL 507 G VNG S ++ AL L L C EGV A RV VD+ HS ++ L L Sbjct: 717 GRLSVAAVNGPSSTVVSGDVQALDEL--LAGCEREGVRARRVPVDYASHSAQMDQLRDEL 774
>ZFP90_RAT (Q4V8A8) Zinc finger protein 90 (Zfp-90)| Length = 633 Score = 30.4 bits (67), Expect = 3.3 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Frame = +1 Query: 220 CTQTF-YSSELTDRHHIHHSENHMDGNCSCRSQETAHPSGEAGPCQVNG 363 C + F + ++ T+ IH EN D + R Q +HP + C V G Sbjct: 452 CGKDFSHITDFTEHQRIHAGENSYDSEQALRQQSLSHPREKPYQCNVCG 500
>YB88_YEAST (P38330) Protein YBR238C| Length = 731 Score = 30.4 bits (67), Expect = 3.3 Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 19/77 (24%) Frame = +1 Query: 130 NHNHNTTQNHDELA*Y**HNHTSLG-------------WILTYC------TQTFYSSELT 252 NH+HN +NH + HNH+ W C +QT Y S+ Sbjct: 105 NHHHNNNRNHHQNN----HNHSKYNNSNQGNSISPDSPWFHKVCAFEDCVSQTLYMSQTP 160 Query: 253 DRHHIHHSENHMDGNCS 303 R ++ H H + N + Sbjct: 161 RRQNMKHHSEHPNSNAN 177
>SECA_ARATH (Q9SYI0) Preprotein translocase secA subunit, chloroplast precursor| Length = 1021 Score = 29.6 bits (65), Expect = 5.6 Identities = 18/62 (29%), Positives = 28/62 (45%) Frame = -2 Query: 534 VGFADVTAAKSLEEKLKASGVAHEVHIYPGCSHAFMNASPEALERRKGMGLTDENQGAID 355 VG V + L + L+ +G+ HEV +NA PE +ER + GA+ Sbjct: 510 VGTTSVEQSDELSQLLREAGITHEV----------LNAKPENVEREAEIVAQSGRLGAVT 559 Query: 354 LA 349 +A Sbjct: 560 IA 561
>Y1571_AERPE (Q9YBM7) Hypothetical protein APE1571| Length = 469 Score = 29.6 bits (65), Expect = 5.6 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 1/74 (1%) Frame = +2 Query: 263 IYIIQRTIWMVIAHADPRKRPIQVEKRDHARSMAP*FSSVKPMPFLLSRASGDAFMK-AW 439 ++ + + IW V +H DP +R + V H + P P P S+ DA K Sbjct: 384 VHDVNQVIWAVSSHVDP-QRDVLVVPHSHTDELDP----ATPTPMYGSKLGIDATRKLPE 438 Query: 440 EHPGYMWTSCATPE 481 E+ G W P+ Sbjct: 439 EYGGKQWPEEVAPD 452
>DLL4_XENLA (P53775) Homeobox protein DLL-4 (XDLL-4)| Length = 285 Score = 29.3 bits (64), Expect = 7.3 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = +3 Query: 333 WRSGTMPGQWLPDSHQSNPCPSSS 404 W+SG +P LP +S+PC S S Sbjct: 186 WKSGEIPSDQLPVGSESSPCSSPS 209
>ADA12_HUMAN (O43184) ADAM 12 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 12) (Meltrin alpha) Length = 909 Score = 29.3 bits (64), Expect = 7.3 Identities = 15/46 (32%), Positives = 19/46 (41%) Frame = -1 Query: 322 PFPGICMSNYHPYGSLNDVYGVCQSAQKNKMSGCNMSVSNLG*CGC 185 P PGIC + G D YG C K+ + C M + G C Sbjct: 543 PAPGICFERVNSAG---DPYGNCGKVSKSSFAKCEMRDAKCGKIQC 585
>Y4495_PHOPR (Q6LK12) UPF0060 membrane protein PBPRB0495| Length = 110 Score = 29.3 bits (64), Expect = 7.3 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%) Frame = -3 Query: 296 LPSIWFSE*-CIWCLSVSSEE*NVWVQYVSIQPRLVWLCYQYYANSS*FCVVLWLWL 129 LP +W E IW L ++ ++ +++ P Y Y F +LWLWL Sbjct: 23 LPYLWLREGKTIWLLIPAAISLALFAWLLTLHPAAAGRVYAAYGGVYIFTAILWLWL 79
>ZBT39_HUMAN (O15060) Zinc finger and BTB domain-containing protein 39| Length = 712 Score = 29.3 bits (64), Expect = 7.3 Identities = 20/46 (43%), Positives = 22/46 (47%), Gaps = 2/46 (4%) Frame = +1 Query: 208 ILTYCTQTFYSSELTDRHH--IHHSENHMDGNCSCRSQETAHPSGE 339 +L C TF E T R SE+H G SC S E AHP GE Sbjct: 114 LLQACHSTFPDLESTARAKPLTSTSESH-SGTLSCPSAEPAHPLGE 158
>YAC1_MAIZE (P08771) Transposable element activator hypothetical 12 kDa protein| (AC 12 kDa protein) Length = 102 Score = 28.9 bits (63), Expect = 9.5 Identities = 9/23 (39%), Positives = 12/23 (52%) Frame = +1 Query: 91 ISLPWRYSIQHESNHNHNTTQNH 159 + + W + H NHNHN NH Sbjct: 10 VKMIWLLFMNHNHNHNHNQNHNH 32
>ZFP90_HUMAN (Q8TF47) Zinc finger protein 90 homolog (Zfp-90)| Length = 636 Score = 28.9 bits (63), Expect = 9.5 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 5/89 (5%) Frame = +1 Query: 112 SIQHESNHNHNTTQNHDELA*Y**HNHTSLGWILTY----CTQTF-YSSELTDRHHIHHS 276 S + + H+T+ DE ++L + +Y C + F + ++ TD IH + Sbjct: 424 SSNYSIDFKHSTSLTQDE---------STLTEVKSYHCNDCGEDFSHITDFTDHQRIHTA 474 Query: 277 ENHMDGNCSCRSQETAHPSGEAGPCQVNG 363 EN D + Q +HP + C V G Sbjct: 475 ENPYDCEQAFSQQAISHPGEKPYQCNVCG 503
>L_NDVB (P11205) Large structural protein (Protein L) (Transcriptase)| (Replicase) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)] Length = 2204 Score = 28.9 bits (63), Expect = 9.5 Identities = 19/59 (32%), Positives = 28/59 (47%) Frame = -2 Query: 516 TAAKSLEEKLKASGVAHEVHIYPGCSHAFMNASPEALERRKGMGLTDENQGAIDLAWSR 340 T EEK A + ++ I+P +HA M AS R++ GL D I +A +R Sbjct: 1013 TEDNEAEEKALAEFLLNQEVIHPRVAHAIMEASSVG-RRKQIQGLVDTTNTVIKIALTR 1070
>ACDA1_ARCFU (O29165) Acetyl-CoA decarbonylase/synthase complex alpha subunit 1| (EC 1.2.99.2) (ACDS complex alpha subunit 1) (ACDS complex carbon monoxide dehydrogenase 1) (ACDS CODH 1) Length = 802 Score = 28.9 bits (63), Expect = 9.5 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 1/73 (1%) Frame = -1 Query: 355 PGMVPLLHLDGPFPGICMSNYHP-YGSLNDVYGVCQSAQKNKMSGCNMSVSNLG*CGCVI 179 PG++ L D + Y P Y + D +C M C++S++ G CG + Sbjct: 41 PGILELRKWDHKL----LERYEPFYAPMQDFCNLCT------MGPCDLSMNKRGACGIDL 90 Query: 178 STMPTRRDFVLCC 140 T R + CC Sbjct: 91 KTAKARLVTIACC 103
>CRT10_YEAST (Q08226) Protein CRT10 (Constitutive RNR transcription regulator| 10) Length = 957 Score = 28.9 bits (63), Expect = 9.5 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%) Frame = +1 Query: 367 LILISQTH-ALPPLEGLRRCVHEGVGASRVYVDFMCHSRSLELL 495 LI+IS TH + PL+G+ C + + + ++F+CH + L + Sbjct: 792 LIIISATHHEIFPLDGVVTCASKSLLQALNRINFVCHIKELNCI 835 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,040,057 Number of Sequences: 219361 Number of extensions: 1991390 Number of successful extensions: 5252 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 4996 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5233 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4200495993 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)