ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart35e02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK106208.1| Oryza sativa (japonica cultivar-group) cDNA clon... 230 4e-57
2dbj|AK104379.1| Oryza sativa (japonica cultivar-group) cDNA clon... 230 4e-57
3dbj|AK059992.1| Oryza sativa (japonica cultivar-group) cDNA clon... 230 4e-57
4ref|NM_193188.1| Oryza sativa (japonica cultivar-group), predic... 228 1e-56
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 198 1e-47
6dbj|AP003350.3| Oryza sativa (japonica cultivar-group) genomic D... 198 1e-47
7gb|BT016534.1| Zea mays clone Contig367 mRNA sequence 178 1e-41
8gb|AY104907.1| Zea mays PCO117250 mRNA sequence 178 1e-41
9gb|AC159436.1| Trypanosoma brucei chromosome 5 clone RPCI93-29K2... 44 0.47
10emb|AL354814.19| Human DNA sequence from clone RP11-94N9 on chro... 44 0.47
11emb|AL671259.1|TBH25N7 Trypanosoma brucei 221 VSG expression sit... 44 0.47
12gb|AC015724.9| Homo sapiens chromosome 17, clone RP11-45J24, com... 44 0.47
13gb|AC093427.2| Homo sapiens chromosome 1 clone RP5-1080K5, compl... 44 0.47
14ref|NM_128811.2| Arabidopsis thaliana hydrolase AT2G32520 mRNA, ... 42 1.8
15emb|AL353710.7| Human DNA sequence from clone RP11-470P4 on chro... 42 1.8
16gb|AC004681.3| Arabidopsis thaliana chromosome 2 clone T26B15 ma... 42 1.8
17gb|BT006416.1| Arabidopsis thaliana At2g32520 gene, complete cds 42 1.8
18gb|AC153986.8| Mus musculus 6 BAC RP24-105F24 (Roswell Park Canc... 42 1.8
19gb|AY086081.1| Arabidopsis thaliana clone 2114 mRNA, complete se... 42 1.8
20dbj|AP001073.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
21gb|CP000026.1| Salmonella enterica subsp. enterica serovar Parat... 42 1.8
22dbj|AK067610.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.8
23gb|AC006449.19|AC006449 Homo sapiens chromosome 17, clone hCIT.5... 42 1.8
24gb|CP000219.1| Drosophila melanogaster genomic scaffold 21100002... 42 1.8
25gb|AC153640.6| Mus musculus 6 BAC RP23-230A2 (Roswell Park Cance... 42 1.8
26gb|AC167172.3| Mus musculus BAC clone RP23-166M7 from chromosome... 40 7.3
27gb|AC163722.6| Mus musculus BAC clone RP23-447O11 from chromosom... 40 7.3
28gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 7.3
29gb|AC131672.3| Mus musculus chromosome UNK clone RP23-314O21, co... 40 7.3
30gb|AC146254.2| Pan troglodytes BAC clone CH251-128L22 from Y, co... 40 7.3
31gb|AC138171.17| Medicago truncatula clone mth2-7f10, complete se... 40 7.3
32gb|AC139708.15| Medicago truncatula clone mth2-9f16, complete se... 40 7.3
33gb|AC152407.19| Medicago truncatula clone mth2-77l23, complete s... 40 7.3
34gb|AC096035.6| Rattus norvegicus 4 BAC CH230-16M16 (Children's H... 40 7.3
35emb|AL360080.21| Human DNA sequence from clone RP11-483I8 on chr... 40 7.3
36emb|AL356096.11| Human DNA sequence from clone RP11-366K1 on chr... 40 7.3
37emb|BX045613.1|CNS097CX Single read from an extremity of a full-... 40 7.3
38emb|AL596204.8| Mouse DNA sequence from clone RP23-180B18 on chr... 40 7.3
39gb|AC046170.6| Homo sapiens chromosome 17, clone RP11-219F9, com... 40 7.3
40emb|BX324007.16| Zebrafish DNA sequence from clone CH211-233C16 ... 40 7.3
41dbj|BS000629.2| Pan troglodytes chromosome Y clone: PTB-194O02, ... 40 7.3
42dbj|BS000552.1| Pan troglodytes chromosome Y clone:PTB-302F24, c... 40 7.3
43gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 7.3
44gb|AC157978.25| Medicago truncatula clone mth2-47l16, complete s... 40 7.3
45gb|AC118981.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 7.3
46dbj|AK135908.1| Mus musculus in vitro fertilized eggs cDNA, RIKE... 40 7.3
47gb|AC104619.5| Homo sapiens BAC clone RP11-192C21 from 4, comple... 40 7.3
48gb|AC159032.2| Pan troglodytes BAC clone CH251-358H13 from chrom... 40 7.3
49gb|AC149130.2| Medicago truncatula chromosome 2 BAC clone mth2-1... 40 7.3
50gb|AC148918.3| Medicago truncatula chromosome 2 BAC clone mth2-4... 40 7.3
51dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
52gb|AC139026.4| Homo sapiens chromosome 17, clone CTD-2514I13, co... 40 7.3
53gb|AC084020.17|AC084020 Mus musculus 11 BAC RP23-301I12 (Roswell... 40 7.3
54gb|AC069164.11|AC069164 Homo sapiens chromosome 13 clone RP11-33... 40 7.3
55gb|AC018686.7| Homo sapiens BAC clone RP11-458M16 from 2, comple... 40 7.3
56gb|AC135972.11| Homo sapiens chromosome 17, clone CTD-2530H17, c... 40 7.3
57gb|AC004098.1|AC004098 Homo sapiens chromosome 17, clone HCIT305... 40 7.3
58gb|AY946082.1| Manihot esculenta clone 46 transposon En/Spm-like... 40 7.3
59dbj|AP000416.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 7.3
60gb|AC004474.1|AC004474 Homo sapiens chromosome Y, clone 475I1, c... 40 7.3
61emb|CR962124.2| Medicago truncatula chromosome 5 clone mth2-44c1... 40 7.3
62gb|AC142274.3| Mus musculus BAC clone RP23-251M14 from 6, comple... 40 7.3
63gb|AC124514.4| Mus musculus BAC clone RP23-450H18 from 16, compl... 40 7.3
64emb|AL606920.5| Mouse DNA sequence from clone RP23-183J6 on chro... 40 7.3
65emb|AL844199.8| Mouse DNA sequence from clone RP23-39F22 on chro... 40 7.3 
>dbj|AK106208.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-G04, full
           insert sequence
          Length = 1086

 Score =  230 bits (116), Expect = 4e-57
 Identities = 209/240 (87%)
 Strand = Plus / Minus

                                                                       
Query: 299 gctcatgcagatcccaggaaacggcccatccaagtggagaagcgggaccatgccaggtca 358
           ||||| || ||||| |||||||| ||||||||||| |||||||| ||||| |||||||||
Sbjct: 891 gctcacgccgatccaaggaaacgacccatccaagtcgagaagcgagaccaggccaggtca 832

                                                                       
Query: 359 atggctccctgattctcatcagtcaaacccatgcccttcctcctctcgagggcctcaggc 418
           || ||| |||| ||||||||||||| ||||||  |||||||||||| || ||||||||| 
Sbjct: 831 attgctgcctggttctcatcagtcagacccatctccttcctcctcttgacggcctcaggt 772

                                                                       
Query: 419 gatgcgttcatgaaggcgtgggagcatccagggtatatgtggacttcatgtgccactcca 478
           |||| |||||| || || || ||||| |||||||| |||||||||||||||| ||| |||
Sbjct: 771 gatgtgttcataaaagcatgcgagcagccagggtagatgtggacttcatgtggcacgcca 712

                                                                       
Query: 479 gaagccttgagcttctcctccaacgacttggccgcggtaacatctgcaaatccaacaaaa 538
           || | ||||||||||||||||| ||||||||| || || |||||||||||||||||||||
Sbjct: 711 gatgacttgagcttctcctccagcgacttggctgccgtgacatctgcaaatccaacaaaa 652
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>dbj|AK104379.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-G12, full
           insert sequence
          Length = 1010

 Score =  230 bits (116), Expect = 4e-57
 Identities = 209/240 (87%)
 Strand = Plus / Minus

                                                                       
Query: 299 gctcatgcagatcccaggaaacggcccatccaagtggagaagcgggaccatgccaggtca 358
           ||||| || ||||| |||||||| ||||||||||| |||||||| ||||| |||||||||
Sbjct: 835 gctcacgccgatccaaggaaacgacccatccaagtcgagaagcgagaccaggccaggtca 776

                                                                       
Query: 359 atggctccctgattctcatcagtcaaacccatgcccttcctcctctcgagggcctcaggc 418
           || ||| |||| ||||||||||||| ||||||  |||||||||||| || ||||||||| 
Sbjct: 775 attgctgcctggttctcatcagtcagacccatctccttcctcctcttgacggcctcaggt 716

                                                                       
Query: 419 gatgcgttcatgaaggcgtgggagcatccagggtatatgtggacttcatgtgccactcca 478
           |||| |||||| || || || ||||| |||||||| |||||||||||||||| ||| |||
Sbjct: 715 gatgtgttcataaaagcatgcgagcagccagggtagatgtggacttcatgtggcacgcca 656

                                                                       
Query: 479 gaagccttgagcttctcctccaacgacttggccgcggtaacatctgcaaatccaacaaaa 538
           || | ||||||||||||||||| ||||||||| || || |||||||||||||||||||||
Sbjct: 655 gatgacttgagcttctcctccagcgacttggctgccgtgacatctgcaaatccaacaaaa 596
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>dbj|AK059992.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-C04, full
           insert sequence
          Length = 1014

 Score =  230 bits (116), Expect = 4e-57
 Identities = 209/240 (87%)
 Strand = Plus / Minus

                                                                       
Query: 299 gctcatgcagatcccaggaaacggcccatccaagtggagaagcgggaccatgccaggtca 358
           ||||| || ||||| |||||||| ||||||||||| |||||||| ||||| |||||||||
Sbjct: 837 gctcacgccgatccaaggaaacgacccatccaagtcgagaagcgagaccaggccaggtca 778

                                                                       
Query: 359 atggctccctgattctcatcagtcaaacccatgcccttcctcctctcgagggcctcaggc 418
           || ||| |||| ||||||||||||| ||||||  |||||||||||| || ||||||||| 
Sbjct: 777 attgctgcctggttctcatcagtcagacccatctccttcctcctcttgacggcctcaggt 718

                                                                       
Query: 419 gatgcgttcatgaaggcgtgggagcatccagggtatatgtggacttcatgtgccactcca 478
           |||| |||||| || || || ||||| |||||||| |||||||||||||||| ||| |||
Sbjct: 717 gatgtgttcataaaagcatgcgagcagccagggtagatgtggacttcatgtggcacgcca 658

                                                                       
Query: 479 gaagccttgagcttctcctccaacgacttggccgcggtaacatctgcaaatccaacaaaa 538
           || | ||||||||||||||||| ||||||||| || || |||||||||||||||||||||
Sbjct: 657 gatgacttgagcttctcctccagcgacttggctgccgtgacatctgcaaatccaacaaaa 598
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>ref|NM_193188.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 846

 Score =  228 bits (115), Expect = 1e-56
 Identities = 202/231 (87%)
 Strand = Plus / Minus

                                                                       
Query: 308 gatcccaggaaacggcccatccaagtggagaagcgggaccatgccaggtcaatggctccc 367
           ||||| |||||||| ||||||||||| |||||||| ||||| ||||||||||| ||| ||
Sbjct: 839 gatccaaggaaacgacccatccaagtcgagaagcgagaccaggccaggtcaattgctgcc 780

                                                                       
Query: 368 tgattctcatcagtcaaacccatgcccttcctcctctcgagggcctcaggcgatgcgttc 427
           || ||||||||||||| ||||||  |||||||||||| || ||||||||| |||| ||||
Sbjct: 779 tggttctcatcagtcagacccatctccttcctcctcttgacggcctcaggtgatgtgttc 720

                                                                       
Query: 428 atgaaggcgtgggagcatccagggtatatgtggacttcatgtgccactccagaagccttg 487
           || || || || ||||| |||||||| |||||||||||||||| ||| ||||| | ||||
Sbjct: 719 ataaaagcatgcgagcagccagggtagatgtggacttcatgtggcacgccagatgacttg 660

                                                              
Query: 488 agcttctcctccaacgacttggccgcggtaacatctgcaaatccaacaaaa 538
           ||||||||||||| ||||||||| || || |||||||||||||||||||||
Sbjct: 659 agcttctcctccagcgacttggctgccgtgacatctgcaaatccaacaaaa 609
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  198 bits (100), Expect = 1e-47
 Identities = 184/212 (86%)
 Strand = Plus / Minus

                                                                            
Query: 299      gctcatgcagatcccaggaaacggcccatccaagtggagaagcgggaccatgccaggtca 358
                ||||| || ||||| |||||||| ||||||||||| |||||||| ||||| |||||||||
Sbjct: 19135808 gctcacgccgatccaaggaaacgacccatccaagtcgagaagcgagaccaggccaggtca 19135749

                                                                            
Query: 359      atggctccctgattctcatcagtcaaacccatgcccttcctcctctcgagggcctcaggc 418
                || ||| |||| ||||||||||||| ||||||  |||||||||||| || ||||||||| 
Sbjct: 19135748 attgctgcctggttctcatcagtcagacccatctccttcctcctcttgacggcctcaggt 19135689

                                                                            
Query: 419      gatgcgttcatgaaggcgtgggagcatccagggtatatgtggacttcatgtgccactcca 478
                |||| |||||| || || || ||||| |||||||| |||||||||||||||| ||| |||
Sbjct: 19135688 gatgtgttcataaaagcatgcgagcagccagggtagatgtggacttcatgtggcacgcca 19135629

                                                
Query: 479      gaagccttgagcttctcctccaacgacttggc 510
                || | ||||||||||||||||| |||||||||
Sbjct: 19135628 gatgacttgagcttctcctccagcgacttggc 19135597



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 518      acatctgcaaatccaacaaaa 538
                |||||||||||||||||||||
Sbjct: 19135310 acatctgcaaatccaacaaaa 19135290



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 272     attcagagaaccatatggatg 292
               |||||||||||||||||||||
Sbjct: 9273040 attcagagaaccatatggatg 9273060
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>dbj|AP003350.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0702H08
          Length = 166899

 Score =  198 bits (100), Expect = 1e-47
 Identities = 184/212 (86%)
 Strand = Plus / Minus

                                                                          
Query: 299    gctcatgcagatcccaggaaacggcccatccaagtggagaagcgggaccatgccaggtca 358
              ||||| || ||||| |||||||| ||||||||||| |||||||| ||||| |||||||||
Sbjct: 101225 gctcacgccgatccaaggaaacgacccatccaagtcgagaagcgagaccaggccaggtca 101166

                                                                          
Query: 359    atggctccctgattctcatcagtcaaacccatgcccttcctcctctcgagggcctcaggc 418
              || ||| |||| ||||||||||||| ||||||  |||||||||||| || ||||||||| 
Sbjct: 101165 attgctgcctggttctcatcagtcagacccatctccttcctcctcttgacggcctcaggt 101106

                                                                          
Query: 419    gatgcgttcatgaaggcgtgggagcatccagggtatatgtggacttcatgtgccactcca 478
              |||| |||||| || || || ||||| |||||||| |||||||||||||||| ||| |||
Sbjct: 101105 gatgtgttcataaaagcatgcgagcagccagggtagatgtggacttcatgtggcacgcca 101046

                                              
Query: 479    gaagccttgagcttctcctccaacgacttggc 510
              || | ||||||||||||||||| |||||||||
Sbjct: 101045 gatgacttgagcttctcctccagcgacttggc 101014



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 518    acatctgcaaatccaacaaaa 538
              |||||||||||||||||||||
Sbjct: 100727 acatctgcaaatccaacaaaa 100707
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>gb|BT016534.1| Zea mays clone Contig367 mRNA sequence
          Length = 1037

 Score =  178 bits (90), Expect = 1e-41
 Identities = 198/234 (84%)
 Strand = Plus / Minus

                                                                       
Query: 305 gcagatcccaggaaacggcccatccaagtggagaagcgggaccatgccaggtcaatggct 364
           |||||||| ||||| |||||||||||||  |||||||| ||||| |||||||| | ||||
Sbjct: 867 gcagatccgaggaaccggcccatccaagaagagaagcgagaccaggccaggtcgacggct 808

                                                                       
Query: 365 ccctgattctcatcagtcaaacccatgcccttcctcctctcgagggcctcaggcgatgcg 424
            |||| ||||||||||||| |||||| |||||| |||||| ||| ||||||||||| | |
Sbjct: 807 tcctggttctcatcagtcagacccatccccttcttcctcttgagtgcctcaggcgaagtg 748

                                                                       
Query: 425 ttcatgaaggcgtgggagcatccagggtatatgtggacttcatgtgccactccagaagcc 484
           ||||||||||| || || ||||||||||||||||| ||||||| ||  |  || ||||  
Sbjct: 747 ttcatgaaggcatgcgaacatccagggtatatgtgaacttcatatggtatcccggaagat 688

                                                                 
Query: 485 ttgagcttctcctccaacgacttggccgcggtaacatctgcaaatccaacaaaa 538
           ||||||||||||||||  |||||||| || || ||||||| ||| |||||||||
Sbjct: 687 ttgagcttctcctccagggacttggctgcagtgacatctgaaaaaccaacaaaa 634
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>gb|AY104907.1| Zea mays PCO117250 mRNA sequence
          Length = 1130

 Score =  178 bits (90), Expect = 1e-41
 Identities = 198/234 (84%)
 Strand = Plus / Minus

                                                                       
Query: 305 gcagatcccaggaaacggcccatccaagtggagaagcgggaccatgccaggtcaatggct 364
           |||||||| ||||| |||||||||||||  |||||||| ||||| |||||||| | ||||
Sbjct: 880 gcagatccgaggaaccggcccatccaagaagagaagcgagaccaggccaggtcgacggct 821

                                                                       
Query: 365 ccctgattctcatcagtcaaacccatgcccttcctcctctcgagggcctcaggcgatgcg 424
            |||| ||||||||||||| |||||| |||||| |||||| ||| ||||||||||| | |
Sbjct: 820 tcctggttctcatcagtcagacccatccccttcttcctcttgagtgcctcaggcgaagtg 761

                                                                       
Query: 425 ttcatgaaggcgtgggagcatccagggtatatgtggacttcatgtgccactccagaagcc 484
           ||||||||||| || || ||||||||||||||||| ||||||| ||  |  || ||||  
Sbjct: 760 ttcatgaaggcatgcgaacatccagggtatatgtgaacttcatatggtatcccggaagat 701

                                                                 
Query: 485 ttgagcttctcctccaacgacttggccgcggtaacatctgcaaatccaacaaaa 538
           ||||||||||||||||  |||||||| || || ||||||| ||| |||||||||
Sbjct: 700 ttgagcttctcctccagggacttggctgcagtgacatctgaaaaaccaacaaaa 647
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>gb|AC159436.1| Trypanosoma brucei chromosome 5 clone RPCI93-29K2, complete sequence
          Length = 135147

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 96   ccttccctggagatattccatc 117
            ||||||||||||||||||||||
Sbjct: 2237 ccttccctggagatattccatc 2216
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>emb|AL354814.19| Human DNA sequence from clone RP11-94N9 on chromosome 13q13.3-14.3
             Contains a guanine nucleotide binding protein (G protein),
             gamma 5 (GNG5) pseudogene, complete sequence
          Length = 70126

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 297   ttgctcatgcagatcccaggaaacggccca 326
             |||||| ||||||||||||||||| |||||
Sbjct: 64827 ttgctcctgcagatcccaggaaacagccca 64856
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>emb|AL671259.1|TBH25N7 Trypanosoma brucei 221 VSG expression site BAC
          Length = 123706

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 96    ccttccctggagatattccatc 117
             ||||||||||||||||||||||
Sbjct: 25527 ccttccctggagatattccatc 25548
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>gb|AC015724.9| Homo sapiens chromosome 17, clone RP11-45J24, complete sequence
          Length = 189055

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 266    tacatcattcagagaaccatat 287
              ||||||||||||||||||||||
Sbjct: 106483 tacatcattcagagaaccatat 106504
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>gb|AC093427.2| Homo sapiens chromosome 1 clone RP5-1080K5, complete sequence
          Length = 131877

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 130   aaccacaaccacaacacaacacaaaa 155
             |||||||||||||||| |||||||||
Sbjct: 67258 aaccacaaccacaacaaaacacaaaa 67283
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>ref|NM_128811.2| Arabidopsis thaliana hydrolase AT2G32520 mRNA, complete cds
          Length = 1118

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 455 atgtggacttcatgtgccactccagaagccttgagcttctc 495
           ||||| ||||||||||| |||||||| || || ||||||||
Sbjct: 666 atgtgaacttcatgtgctactccagacgctttcagcttctc 626
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>emb|AL353710.7| Human DNA sequence from clone RP11-470P4 on chromosome 9 Contains a
             novel gene, the 5' end of the CHAC gene for chorea
             acanthocytosis and a CpG island, complete sequence
          Length = 110633

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 27    gcatgaaaacatgtgcaacat 47
             |||||||||||||||||||||
Sbjct: 51508 gcatgaaaacatgtgcaacat 51488
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>gb|AC004681.3| Arabidopsis thaliana chromosome 2 clone T26B15 map TEn5, complete
             sequence
          Length = 78732

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 455   atgtggacttcatgtgccactccagaagccttgagcttctc 495
             ||||| ||||||||||| |||||||| || || ||||||||
Sbjct: 26332 atgtgaacttcatgtgctactccagacgctttcagcttctc 26372
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>gb|BT006416.1| Arabidopsis thaliana At2g32520 gene, complete cds
          Length = 720

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 455 atgtggacttcatgtgccactccagaagccttgagcttctc 495
           ||||| ||||||||||| |||||||| || || ||||||||
Sbjct: 572 atgtgaacttcatgtgctactccagacgctttcagcttctc 532
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>gb|AC153986.8| Mus musculus 6 BAC RP24-105F24 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 162415

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 63    gtttatgtgacgtgttcagaa 83
             |||||||||||||||||||||
Sbjct: 21329 gtttatgtgacgtgttcagaa 21349
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>gb|AY086081.1| Arabidopsis thaliana clone 2114 mRNA, complete sequence
          Length = 931

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 455 atgtggacttcatgtgccactccagaagccttgagcttctc 495
           ||||| ||||||||||| |||||||| || || ||||||||
Sbjct: 614 atgtgaacttcatgtgctactccagacgctttcagcttctc 574
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>dbj|AP001073.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0667A10
          Length = 152237

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 272   attcagagaaccatatggatg 292
             |||||||||||||||||||||
Sbjct: 49634 attcagagaaccatatggatg 49654
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>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
          Length = 4585229

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 469     tgccactccagaagccttgag 489
               |||||||||||||||||||||
Sbjct: 2567360 tgccactccagaagccttgag 2567340
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>dbj|AK067610.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013112F12, full
            insert sequence
          Length = 2264

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 272  attcagagaaccatatggatg 292
            |||||||||||||||||||||
Sbjct: 2100 attcagagaaccatatggatg 2080
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>gb|AC006449.19|AC006449 Homo sapiens chromosome 17, clone hCIT.58_E_17, complete sequence
          Length = 286758

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 385    acccatgcccttcctcctctc 405
              |||||||||||||||||||||
Sbjct: 155183 acccatgcccttcctcctctc 155163
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>gb|CP000219.1| Drosophila melanogaster genomic scaffold 211000022280778
          Length = 150125

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 3     gacaaaattcgtaaatcaatt 23
             |||||||||||||||||||||
Sbjct: 46075 gacaaaattcgtaaatcaatt 46055
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>gb|AC153640.6| Mus musculus 6 BAC RP23-230A2 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 208897

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 385   acccatgcccttcctcctctc 405
             |||||||||||||||||||||
Sbjct: 44461 acccatgcccttcctcctctc 44481
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>gb|AC167172.3| Mus musculus BAC clone RP23-166M7 from chromosome 3, complete sequence
          Length = 204419

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 129    taaccacaaccacaacacaa 148
              ||||||||||||||||||||
Sbjct: 100806 taaccacaaccacaacacaa 100825
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>gb|AC163722.6| Mus musculus BAC clone RP23-447O11 from chromosome 19, complete
             sequence
          Length = 178562

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 386   cccatgcccttcctcctctc 405
             ||||||||||||||||||||
Sbjct: 80775 cccatgcccttcctcctctc 80794
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 243     tgagctgactgacagacacc 262
               ||||||||||||||||||||
Sbjct: 7276375 tgagctgactgacagacacc 7276356
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>gb|AC131672.3| Mus musculus chromosome UNK clone RP23-314O21, complete sequence
          Length = 199837

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 241    tctgagctgactgacagaca 260
              ||||||||||||||||||||
Sbjct: 192476 tctgagctgactgacagaca 192457
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>gb|AC146254.2| Pan troglodytes BAC clone CH251-128L22 from Y, complete sequence
          Length = 177240

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 74    gtgttcagaagtgtttcatt 93
             ||||||||||||||||||||
Sbjct: 43736 gtgttcagaagtgtttcatt 43755
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>gb|AC138171.17| Medicago truncatula clone mth2-7f10, complete sequence
          Length = 104336

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 519   catctgcaaatccaacaaaa 538
             ||||||||||||||||||||
Sbjct: 28075 catctgcaaatccaacaaaa 28094
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>gb|AC139708.15| Medicago truncatula clone mth2-9f16, complete sequence
          Length = 117358

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 519   catctgcaaatccaacaaaa 538
             ||||||||||||||||||||
Sbjct: 94025 catctgcaaatccaacaaaa 94006
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>gb|AC152407.19| Medicago truncatula clone mth2-77l23, complete sequence
          Length = 113470

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 519   catctgcaaatccaacaaaa 538
             ||||||||||||||||||||
Sbjct: 20365 catctgcaaatccaacaaaa 20384
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>gb|AC096035.6| Rattus norvegicus 4 BAC CH230-16M16 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 228433

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 131    accacaaccacaacacaaca 150
              ||||||||||||||||||||
Sbjct: 129673 accacaaccacaacacaaca 129692
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>emb|AL360080.21| Human DNA sequence from clone RP11-483I8 on chromosome 1, complete
             sequence
          Length = 202149

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    catgaaaacatgtgcaacat 47
             ||||||||||||||||||||
Sbjct: 76232 catgaaaacatgtgcaacat 76213
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>emb|AL356096.11| Human DNA sequence from clone RP11-366K1 on chromosome 13 Contains a
              novel gene and a CpG island, complete sequence
          Length = 190101

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 225    ccagacattttattcttctg 244
              ||||||||||||||||||||
Sbjct: 176645 ccagacattttattcttctg 176626
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>emb|BX045613.1|CNS097CX Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAC19DD11 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 782

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 134 acaaccacaacacaacacaa 153
           ||||||||||||||||||||
Sbjct: 140 acaaccacaacacaacacaa 121
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>emb|AL596204.8| Mouse DNA sequence from clone RP23-180B18 on chromosome 11 Contains the
             Flcn gene for folliculin, the gene for a novel
             Phospholipase D Active site motif-containing protein, two
             novel genes, the gene for Rho interacting protein 3
             (Rhoip3), the gene (possible pseudogene) for a novel
             protein similar to olfactory receptor proteins and two CpG
             islands, complete sequence
          Length = 205606

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    catgaaaacatgtgcaacat 47
             ||||||||||||||||||||
Sbjct: 93040 catgaaaacatgtgcaacat 93059
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>gb|AC046170.6| Homo sapiens chromosome 17, clone RP11-219F9, complete sequence
          Length = 198470

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 478   agaagccttgagcttctcct 497
             ||||||||||||||||||||
Sbjct: 44748 agaagccttgagcttctcct 44729
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>emb|BX324007.16| Zebrafish DNA sequence from clone CH211-233C16 in linkage group 16,
              complete sequence
          Length = 165294

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 22     ttgttgcatgaaaacatgtg 41
              ||||||||||||||||||||
Sbjct: 148064 ttgttgcatgaaaacatgtg 148045
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>dbj|BS000629.2| Pan troglodytes chromosome Y clone: PTB-194O02, complete sequence
          Length = 184689

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 74     gtgttcagaagtgtttcatt 93
              ||||||||||||||||||||
Sbjct: 109378 gtgttcagaagtgtttcatt 109397
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>dbj|BS000552.1| Pan troglodytes chromosome Y clone:PTB-302F24, complete sequences
          Length = 157728

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 74     gtgttcagaagtgtttcatt 93
              ||||||||||||||||||||
Sbjct: 100716 gtgttcagaagtgtttcatt 100697
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 74       gtgttcagaagtgtttcatt 93
                ||||||||||||||||||||
Sbjct: 18032323 gtgttcagaagtgtttcatt 18032304
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>gb|AC157978.25| Medicago truncatula clone mth2-47l16, complete sequence
          Length = 125021

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 519   catctgcaaatccaacaaaa 538
             ||||||||||||||||||||
Sbjct: 80937 catctgcaaatccaacaaaa 80918
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>gb|AC118981.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0060E18, from chromosome 3, complete sequence
          Length = 147983

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 243   tgagctgactgacagacacc 262
             ||||||||||||||||||||
Sbjct: 27631 tgagctgactgacagacacc 27612
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>dbj|AK135908.1| Mus musculus in vitro fertilized eggs cDNA, RIKEN full-length
            enriched library, clone:7420436A12
            product:unclassifiable, full insert sequence
          Length = 3733

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 131  accacaaccacaacacaacacaaa 154
            ||||||||||||||| ||||||||
Sbjct: 3361 accacaaccacaacaaaacacaaa 3384
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>gb|AC104619.5| Homo sapiens BAC clone RP11-192C21 from 4, complete sequence
          Length = 187749

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 33    aaacatgtgcaacataaaaa 52
             ||||||||||||||||||||
Sbjct: 45708 aaacatgtgcaacataaaaa 45689
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>gb|AC159032.2| Pan troglodytes BAC clone CH251-358H13 from chromosome unknown,
             complete sequence
          Length = 183880

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 483   ccttgagcttctcctccaac 502
             ||||||||||||||||||||
Sbjct: 60034 ccttgagcttctcctccaac 60053
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>gb|AC149130.2| Medicago truncatula chromosome 2 BAC clone mth2-193n2, complete
             sequence
          Length = 132313

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 132   ccacaaccacaacacaacac 151
             ||||||||||||||||||||
Sbjct: 66862 ccacaaccacaacacaacac 66881
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>gb|AC148918.3| Medicago truncatula chromosome 2 BAC clone mth2-44o11, complete
             sequence
          Length = 126437

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 132   ccacaaccacaacacaacac 151
             ||||||||||||||||||||
Sbjct: 32924 ccacaaccacaacacaacac 32905
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 243     tgagctgactgacagacacc 262
               ||||||||||||||||||||
Sbjct: 7274270 tgagctgactgacagacacc 7274251
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>gb|AC139026.4| Homo sapiens chromosome 17, clone CTD-2514I13, complete sequence
          Length = 226696

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 478   agaagccttgagcttctcct 497
             ||||||||||||||||||||
Sbjct: 36110 agaagccttgagcttctcct 36129
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>gb|AC084020.17|AC084020 Mus musculus 11 BAC RP23-301I12 (Roswell Park Cancer Institute Mouse
             BAC Library) complete sequence
          Length = 147670

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    catgaaaacatgtgcaacat 47
             ||||||||||||||||||||
Sbjct: 84292 catgaaaacatgtgcaacat 84273
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>gb|AC069164.11|AC069164 Homo sapiens chromosome 13 clone RP11-338F18, complete sequence
          Length = 169903

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 225   ccagacattttattcttctg 244
             ||||||||||||||||||||
Sbjct: 25189 ccagacattttattcttctg 25170
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>gb|AC018686.7| Homo sapiens BAC clone RP11-458M16 from 2, complete sequence
          Length = 223367

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 481    agccttgagcttctcctcca 500
              ||||||||||||||||||||
Sbjct: 103270 agccttgagcttctcctcca 103251
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>gb|AC135972.11| Homo sapiens chromosome 17, clone CTD-2530H17, complete sequence
          Length = 158617

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 478    agaagccttgagcttctcct 497
              ||||||||||||||||||||
Sbjct: 105927 agaagccttgagcttctcct 105908
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>gb|AC004098.1|AC004098 Homo sapiens chromosome 17, clone HCIT305D20, complete sequence
          Length = 166978

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 478   agaagccttgagcttctcct 497
             ||||||||||||||||||||
Sbjct: 43719 agaagccttgagcttctcct 43700
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>gb|AY946082.1| Manihot esculenta clone 46 transposon En/Spm-like, partial sequence
          Length = 647

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 20  aattgttgcatgaaaacatg 39
           ||||||||||||||||||||
Sbjct: 358 aattgttgcatgaaaacatg 339
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>dbj|AP000416.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MLE3
          Length = 3059

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 519 catctgcaaatccaacaaaa 538
           ||||||||||||||||||||
Sbjct: 725 catctgcaaatccaacaaaa 706
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>gb|AC004474.1|AC004474 Homo sapiens chromosome Y, clone 475I1, complete sequence
          Length = 148280

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    gtgttcagaagtgtttcatt 93
             ||||||||||||||||||||
Sbjct: 70380 gtgttcagaagtgtttcatt 70361
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>emb|CR962124.2| Medicago truncatula chromosome 5 clone mth2-44c15, COMPLETE SEQUENCE
          Length = 136068

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 132   ccacaaccacaacacaacac 151
             ||||||||||||||||||||
Sbjct: 33011 ccacaaccacaacacaacac 33030
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>gb|AC142274.3| Mus musculus BAC clone RP23-251M14 from 6, complete sequence
          Length = 179732

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 131   accacaaccacaacacaacacaaa 154
             ||||||||||||||| ||||||||
Sbjct: 27998 accacaaccacaacaaaacacaaa 27975
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>gb|AC124514.4| Mus musculus BAC clone RP23-450H18 from 16, complete sequence
          Length = 182032

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 14     taaatcaattgttgcatgaa 33
              ||||||||||||||||||||
Sbjct: 138186 taaatcaattgttgcatgaa 138167
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>emb|AL606920.5| Mouse DNA sequence from clone RP23-183J6 on chromosome 3, complete
             sequence
          Length = 89297

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 129   taaccacaaccacaacacaa 148
             ||||||||||||||||||||
Sbjct: 86079 taaccacaaccacaacacaa 86060
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>emb|AL844199.8| Mouse DNA sequence from clone RP23-39F22 on chromosome 4, complete
              sequence
          Length = 205589

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 240    ttctgagctgactgacagacacca 263
              |||||||||||| |||||||||||
Sbjct: 142386 ttctgagctgacagacagacacca 142409


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,007,037
Number of Sequences: 3902068
Number of extensions: 5007037
Number of successful extensions: 103910
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103620
Number of HSP's gapped (non-prelim): 288
length of query: 538
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 515
effective length of database: 17,143,297,704
effective search space: 8828798317560
effective search space used: 8828798317560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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